Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

12295550 .. 12297758

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1163100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTTTATCACTCTAGTTTCGTTGACGATGAAGAAATTACTAAAGCTTGTGGATGCCCTCTTTTACCTTTGAAAACCCACATAAAGGGACCTGCCCCGGTTTCAGAGCAAGATAGAACGGATATTGTTGATGAAGCGATTACATTCTTTCGAGCTAATGTTTTCTTTAGGAACTTTGATATTAAGAGCTCGGCCGATAAGCTCCTCATTTATTTGACATTTTATATCAATGTGGCTTTGAAGCGGCTTGAGGGTTGCAGAACCTTGGCTGAAGGAACCAAGGCCATTATTAATTTGGGACTTGAAAAAGTTCCTGTTCCTGGAGAGCCAAGTTTCCCTTTCCCGGGACTTTTTCCTCTTCCTCAGTCCCAGCGGGAAGCAGAATTGCTGAGGAATTATTTGAAGCAGATACGGGAGGAAGCAAGCGGGAGATTATTGAGCGTTGCTTATAGACCGAATGGGACTCCCAACAAGTGGTGGTTGGCGTTTGCTAAAAGGAAATTTATGAACGTCATTGTTCCGTCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

177

Amino Acids

19.89

Weight (kDa)

8.99

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	2 - 170	5.9e-64	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	474
AciI	CCGC	3 cut(s)	244, 373, 426
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
AgsI	TTSAA	4 cut(s)	73, 241, 305, 403
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	4 cut(s)	47, 155, 189, 202
AluI	AGCT	4 cut(s)	47, 155, 189, 202
Alw21I	GWGCWC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	2 cut(s)	192, 282
ApoI	RAATTY	1 cut(s)	500
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	3 cut(s)	98, 344, 345
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	3 cut(s)	98, 344, 345
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	4 cut(s)	98, 321, 344, 345
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	90, 277
BmrFI	CCNGG	4 cut(s)	98, 321, 344, 345
BmsI	GCATC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	3 cut(s)	98, 344, 345
BsaJI	CCNNGG	4 cut(s)	96, 264, 279, 343
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	4 cut(s)	96, 264, 279, 343
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
BseMII	CTCAG	2 cut(s)	377, 380
BseRI	GAGGAG	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	194, 284
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	98, 344
BslFI	GGGAC	5 cut(s)	102, 312, 352, 360, 475
BslI	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
BsmFI	GGGAC	5 cut(s)	102, 312, 352, 360, 475
BsnI	GGCC	2 cut(s)	194, 284
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	191
BspACI	CCGC	3 cut(s)	244, 373, 426
BspANI	GGCC	2 cut(s)	194, 284
BspCNI	CTCAG	2 cut(s)	376, 381
BspLI	GGNNCC	2 cut(s)	90, 277
BspMI	ACCTGC	1 cut(s)	100
BssECI	CCNNGG	4 cut(s)	96, 264, 279, 343
BssT1I	CCWWGG	2 cut(s)	264, 279
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	363, 389
BstF5I	GGATG	1 cut(s)	59
BstMCI	CGRYCG	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	4 cut(s)	96, 319, 342, 343
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	194, 284
BtsCI	GGATG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	89
Cfr9I	CCCGGG	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	363, 389
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	264, 279
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	89
Eco52I	CGGCCG	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	264, 279
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	264, 279
FaiI	YATR	4 cut(s)	83, 225, 450, 506
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FaqI	GGGAC	5 cut(s)	102, 312, 352, 360, 475
FauI	CCCGC	2 cut(s)	366, 419
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	194, 284
HapII	CCGG	2 cut(s)	98, 344
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	2 cut(s)	98, 344
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	363, 389
HpySE526I	ACGT	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	105, 111, 306, 327, 333, 357, 383
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	510
MboII	GAAGA	2 cut(s)	44, 350
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	5 cut(s)	36, 292, 383, 394, 500
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	69, 215, 244, 366, 372, 384, 409
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	183, 291
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	2 cut(s)	98, 344
MspR9I	CCNGG	4 cut(s)	98, 321, 344, 345
MvaI	CCWGG	1 cut(s)	321
NciI	CCSGG	3 cut(s)	98, 344, 345
NlaIV	GGNNCC	2 cut(s)	90, 277
NmeAIII	GCCGAG	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	474
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	90, 277
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	183, 291
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	4 cut(s)	98, 321, 344, 345
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	8 cut(s)	49, 70, 94, 157, 191, 204, 266, 513
SfaNI	GCATC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	89
SmaI	CCCGGG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	5 cut(s)	36, 292, 383, 394, 500
SsiI	CCGC	3 cut(s)	244, 373, 426
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	4 cut(s)	96, 319, 342, 343
StyI	CCWWGG	2 cut(s)	264, 279
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	469
TasI	AATT	5 cut(s)	36, 292, 383, 394, 500
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	183, 291
Tru9I	TTAA	2 cut(s)	183, 291
TspDTI	ATGAA	3 cut(s)	45, 147, 521
TspGWI	ACGGA	2 cut(s)	134, 510
TspMI	CCCGGG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.