Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Forward (+)

24955189 .. 24955599

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1159100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTTATCACTCCAATTTCGTCAACGCTGAAGGAATTACTAAAGCTTGTGGATGCCCTCTATTGCCGTTGAAAAGCCACATAAAGGGACCTGCCCCAGTTTCAAAGCAAGATAGAACGGATATTGTTGATGAAGCGATTTCATTCTTTCGCGCTAATGTTTTCTTTAGGAACTTTGATGTTAAGAGCTCGACCGATAAGCTCCTCATTTATTTGACATTTTGTATCAATGTGGCTTTGAAGCGGCTGGAGGGTTGCAGAACTTTGGCTGAAGGAACCAAGGCCATTATTAATTTGGGACTACAAAAAGTTCTTGTTACTGGAGAGCCGAGTTTCCCTTTCCCAGGACTTTTCCCTCTTCCTCAGTCCCAGCAGGAAGCAGACGTGTTGTTGGAAACAAGAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

137

Amino Acids

15.04

Weight (kDa)

8.39

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	2 - 130	4.4e-39	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccII	CGCG	1 cut(s)	153
AciI	CCGC	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	51, 291
AfiI	CCNNNNNNNGG	2 cut(s)	85, 344
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	3 cut(s)	73, 105, 241
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	47, 189, 202
AluI	AGCT	3 cut(s)	47, 189, 202
Alw21I	GWGCWC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	282
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	90, 277
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	92
BpmI	CTGGAG	2 cut(s)	269, 342
BsaJI	CCNNGG	2 cut(s)	279, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 344
Bse1I	ACTGG	2 cut(s)	98, 325
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	279, 343
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	85, 344
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	2 cut(s)	98, 325
BseRI	GAGGAG	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	191
BslFI	GGGAC	3 cut(s)	102, 312, 352
BslI	CCNNNNNNNGG	2 cut(s)	85, 344
BsmFI	GGGAC	3 cut(s)	102, 312, 352
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	90, 277
BspMI	ACCTGC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	98, 325
BssECI	CCNNGG	2 cut(s)	279, 343
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstMCI	CGRYCG	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	89
CviJI	RGCY	9 cut(s)	47, 78, 189, 202, 236, 247, 269, 284, 328
CviKI_1	RGCY	9 cut(s)	47, 78, 189, 202, 236, 247, 269, 284, 328
DdeI	CTNAG	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	51, 291
EcoICRI	GAGCTC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	279
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	3 cut(s)	102, 312, 352
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	245
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	2 cut(s)	269, 342
HaeIII	GGCC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	26, 266
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	384
HspAI	GCGC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	105, 111, 233, 306, 330, 357, 359, 383
LweI	GCATC	1 cut(s)	44
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	16, 36, 292
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	5 cut(s)	69, 215, 244, 366, 372
MseI	TTAA	2 cut(s)	183, 291
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	153
NlaIV	GGNNCC	2 cut(s)	90, 277
NmeAIII	GCCGAG	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	90, 277
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	183, 291
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	5 cut(s)	49, 94, 191, 204, 387
SfaNI	GCATC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	3 cut(s)	16, 36, 292
SsiI	CCGC	1 cut(s)	244
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	191
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	16, 36, 292
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	183, 291
Tru9I	TTAA	2 cut(s)	183, 291
TspDTI	ATGAA	2 cut(s)	132, 147
TspGWI	ACGGA	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.