Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007337

Physical Location & Seq

Genomic Coordinates Reverse (-)

1063281 .. 1064843

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTTTATCACTCTAGTTTCGTCAACGATGAAGGTATTACTAAAGCTTGTGGGTGCCCTCTGTTGCCGTTGAAAAGCCACATAAAGGGACCTGCCCCGGTTTCAGAGCAAGATAGAACAGATATTGTTGATGAAGCGATTTCATTCTTTCGCGCTAATGTTTTCTTTAGGAACTTTGATGTTAAGAGCTCGGCCGATAAGCTCCTCATTTATTTGACATTTTATATCAATGTGGCTTTGAAGCGGCTTGAGGGTTGCAGAACTTTGGCTGAAGGAACCAAGGCCATTATTAATTTGGGACTAGAAAAAGTTCCTGTTCCTGGAGAGCCAAGTTTCCCTTTCCCGGGACTTTTCCCTCTTCCTCAGTCCCAGCAGGAAGCAGAATTGCTGAGGAATTATTTGAAGCAGATACGGGAGGAAGCAAGCGGTAGATTATTGAGCGTTGCTTATAGACCGAACGGGACTCCCAATAAGTGGTGGTTGGCGTTTGCTAAAAGGAAATTTATGAACATCATTGTTCCATCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030027 GO:0030029 GO:0030036 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0031252 GO:0031334 GO:0031941 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044463 GO:0044464 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0061850 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090723 GO:0090725 GO:0097435 GO:0097458 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:0120025 GO:0120038 GO:0150034 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map00563 map01100 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P21-Arc

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

9.17

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P21-Arc	PF04062	2 - 170	3.9e-63	ARP2/3 complex ARPC3 (21 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60430 AT1G60430 AT1G60430 AT1G60430
fragaria_vesca	FvH4_3g33280 FvH4_3g33280 FvH4_3g33280
malus_domestica	MD02G1020300.v1.1 MD10G1159100.v1.1 MD15G1163100.v1.1
prunus_persica	Prupe.7G251500_v2.0.a1 Prupe.7G251500_v2.0.a1
pyrus_communis	pycom02g01780
rosa_chinensis	RchiOBHm_Chr5g0060671
rosa_laevigata	RLG00000035397
rosa_multiflora	Rmu_sc0000864.1_g000009
rosa_roxburghii	Rroxscaffold_1G00020120
rosa_rugosa	Rorug05G0332400 Rorug05G0332500 Rorug05G0332600
rosa_samantha	Rh5AG396100 Rh5BG408200 Rh5CG432800 Rh5DG423100
rosa_wichuraiana	Rw5G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	474
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	244, 426
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
AgsI	TTSAA	3 cut(s)	73, 241, 403
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	47, 189, 202
AluI	AGCT	3 cut(s)	47, 189, 202
Alw21I	GWGCWC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	2 cut(s)	192, 282
ApoI	RAATTY	1 cut(s)	500
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	3 cut(s)	98, 344, 345
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	389
BccI	CCATC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	3 cut(s)	98, 344, 345
BfaI	CTAG	2 cut(s)	15, 302
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	4 cut(s)	98, 321, 344, 345
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	56, 90, 277
BmrFI	CCNGG	4 cut(s)	98, 321, 344, 345
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	3 cut(s)	98, 344, 345
BsaJI	CCNNGG	3 cut(s)	96, 279, 343
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	96, 279, 343
BseLI	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
BseMII	CTCAG	2 cut(s)	377, 380
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	59
BseX3I	CGGCCG	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	194, 284
BshNI	GGYRCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	98, 344
BslFI	GGGAC	5 cut(s)	102, 312, 352, 360, 475
BslI	CCNNNNNNNGG	5 cut(s)	85, 320, 343, 344, 474
BsmFI	GGGAC	5 cut(s)	102, 312, 352, 360, 475
BsnI	GGCC	2 cut(s)	194, 284
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	59, 191
BspACI	CCGC	2 cut(s)	244, 426
BspANI	GGCC	2 cut(s)	194, 284
BspCNI	CTCAG	2 cut(s)	376, 381
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	56, 90, 277
BspMI	ACCTGC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	96, 279, 343
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	363, 389
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	155
BstMCI	CGRYCG	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	4 cut(s)	96, 319, 342, 343
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	153
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	194, 284
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	89
Cfr9I	CCCGGG	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	363, 389
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	89
Eco52I	CGGCCG	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	279
FaiI	YATR	4 cut(s)	83, 225, 450, 506
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FaqI	GGGAC	5 cut(s)	102, 312, 352, 360, 475
Fnu4HI	GCNGC	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	15, 302
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	194, 284
HapII	CCGG	2 cut(s)	98, 344
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	2 cut(s)	98, 344
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	26, 266
HpyCH4V	TGCA	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	363, 389
HspAI	GCGC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	105, 111, 306, 327, 333, 357, 359, 383
MaeI	CTAG	2 cut(s)	15, 302
MboII	GAAGA	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	59, 191
MluCI	AATT	4 cut(s)	292, 383, 394, 500
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	69, 215, 244, 366, 372, 384, 409
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	183, 291
MspI	CCGG	2 cut(s)	98, 344
MspR9I	CCNGG	4 cut(s)	98, 321, 344, 345
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	3 cut(s)	98, 344, 345
NlaIV	GGNNCC	3 cut(s)	56, 90, 277
NmeAIII	GCCGAG	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	474
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	56, 90, 277
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	183, 291
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	4 cut(s)	98, 321, 344, 345
SduI	GDGCHC	2 cut(s)	59, 191
SetI	ASST	5 cut(s)	37, 49, 94, 191, 204
SinI	GGWCC	1 cut(s)	89
SmaI	CCCGGG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	292, 383, 394, 500
SsiI	CCGC	2 cut(s)	244, 426
SspMI	CTAG	2 cut(s)	15, 302
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	4 cut(s)	96, 319, 342, 343
StyI	CCWWGG	1 cut(s)	279
TaqII	GACCGA	1 cut(s)	469
TasI	AATT	4 cut(s)	292, 383, 394, 500
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	183, 291
Tru9I	TTAA	2 cut(s)	183, 291
TspDTI	ATGAA	4 cut(s)	45, 132, 147, 521
TspMI	CCCGGG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	15, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.