Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013538

Physical Location & Seq

Genomic Coordinates Reverse (-)

22305780 .. 22308289

Gene Structure 2510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGGATTCCAATGAGCTTGGCTCGGCGAGCCGACGACTCTCCGTCGTCACCAATCATCTCATCCCTATCGGATTCAGTCCAGCTCGTGCTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGATTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGAAAAAAACTGATTTCTTTGGTGAAGGAGATAACAAGGAGTTTGTTGATATTATTTATGAGAAAGCCCTTGATGAAGGCATTGCAAAGATTACTATAAACCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACTGTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGATAGCTCTGTAGGAGTCATCATACTCACCGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCTTTGAGAACACAAGACGGGTATGCTGATCCCAATGACGTTGGCCGCCTTAATGTTCTTGATCTTCAGGTTCAAATCCGCAGATTGCCAAAGCCAGTTATTGCAATGGTAGCTGGTTATGCTGTTGGAGGAGGACACATTTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCGATTTTTGGTCAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGTCTGGTTGGTCCTAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCTGAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAGGATTTGGAGAAAGAAACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTACTTAAGGCAGCACTTAATGCAGTTGATGATGGCCATGCCGGCCTTCAGGGACTCGGTGGTGATGCGACACTCTTATTCTATGGAACCGAAGAAGCTACTGAAGGGAGAACTGCTTATATGCACCGCCGACCACCGGACTTCTCTAAATTTCACCGGCGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008935 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

ECH_1

Protein Analysis

337

Amino Acids

37.06

Weight (kDa)

6.77

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	85 - 331	2.2e-74	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	88 - 263	1.8e-21	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60550
fragaria_vesca	FvH4_4g34130 FvH4_4g34130 FvH4_4g34130
malus_domestica	MD13G1094000.v1.1 MD16G1095300.v1.1
prunus_persica	Prupe.1G251300_v2.0.a1
pyrus_communis	pycom13g08190
rosa_chinensis	RchiOBHm_Chr4g0443641
rosa_laevigata	RLG00000005906
rosa_multiflora	Rmu_sc0001118.1_g000011 Rmu_sc0033917.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384190
rosa_samantha	Rh4AG405800 Rh4BG416800 Rh4CG431300 Rh4DG412500
rosa_wichuraiana	Rw4G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 469, 502, 773, 973
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	3 cut(s)	281, 466, 880
AcsI	RAATTY	1 cut(s)	995
AcuI	CTGAAG	4 cut(s)	473, 756, 878, 969
AfaI	GTAC	2 cut(s)	771, 849
AfiI	CCNNNNNNNGG	2 cut(s)	632, 982
AflII	CTTAAG	1 cut(s)	851
AgsI	TTSAA	1 cut(s)	497
AhdI	GACNNNNNGTC	1 cut(s)	44
AluBI	AGCT	8 cut(s)	19, 86, 325, 360, 536, 596, 731, 944
AluI	AGCT	8 cut(s)	19, 86, 325, 360, 536, 596, 731, 944
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	5 cut(s)	281, 305, 466, 880, 889
ApeKI	GCWGC	2 cut(s)	593, 857
ApoI	RAATTY	1 cut(s)	995
AspS9I	GGNCC	2 cut(s)	623, 683
AsuHPI	GGTGA	7 cut(s)	43, 164, 212, 373, 428, 920, 992
AvaII	GGWCC	2 cut(s)	623, 683
AxyI	CCTNAGG	1 cut(s)	627
BaeI	ACNNNNGTAYC	2 cut(s)	753, 786
BalI	TGGCCA	1 cut(s)	882
BauI	CACGAG	2 cut(s)	87, 696
BbvI	GCAGC	2 cut(s)	605, 869
BccI	CCATC	3 cut(s)	118, 671, 872
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	675
BfaI	CTAG	2 cut(s)	348, 776
BfmI	CTRYAG	2 cut(s)	109, 363
BfrI	CTTAAG	1 cut(s)	851
BglI	GCCNNNNNGGC	1 cut(s)	888
BisI	GCNGC	3 cut(s)	469, 594, 858
BlsI	GCNGC	3 cut(s)	470, 595, 859
BmcAI	AGTACT	1 cut(s)	849
Bme18I	GGWCC	2 cut(s)	623, 683
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	623, 683
BmiI	GGNNCC	2 cut(s)	624, 934
BmsI	GCATC	3 cut(s)	334, 634, 901
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaWI	WCCGGW	1 cut(s)	982
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 982
Bse118I	RCCGGY	4 cut(s)	279, 383, 887, 1002
Bse1I	ACTGG	1 cut(s)	518
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	2 cut(s)	258, 534
BseGI	GGATG	2 cut(s)	63, 133
BseLI	CCNNNNNNNGG	2 cut(s)	632, 982
BseMI	GCAATG	2 cut(s)	258, 534
BseMII	CTCAG	2 cut(s)	111, 323
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	605, 869
BsgI	GTGCAG	1 cut(s)	829
BshFI	GGCC	5 cut(s)	283, 307, 468, 882, 891
BsiSI	CCGG	6 cut(s)	280, 304, 384, 888, 983, 1003
BslFI	GGGAC	2 cut(s)	765, 912
BslI	CCNNNNNNNGG	2 cut(s)	632, 982
BsmAI	GTCTC	1 cut(s)	675
BsmFI	GGGAC	2 cut(s)	765, 912
BsnI	GGCC	5 cut(s)	283, 307, 468, 882, 891
Bsp143I	GATC	4 cut(s)	418, 451, 484, 580
BspACI	CCGC	5 cut(s)	5, 469, 502, 773, 973
BspANI	GGCC	5 cut(s)	283, 307, 468, 882, 891
BspCNI	CTCAG	2 cut(s)	110, 322
BspLI	GGNNCC	2 cut(s)	624, 934
BspPI	GGATC	1 cut(s)	446
BspTI	CTTAAG	1 cut(s)	851
BsrDI	GCAATG	2 cut(s)	258, 534
BsrFI	RCCGGY	4 cut(s)	279, 383, 887, 1002
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	4 cut(s)	279, 383, 887, 1002
BssMI	GATC	4 cut(s)	418, 451, 484, 580
BssSI	CACGAG	2 cut(s)	87, 696
Bst2BI	CACGAG	2 cut(s)	87, 696
Bst4CI	ACNGT	5 cut(s)	152, 316, 766, 799, 830
BstAFI	CTTAAG	1 cut(s)	851
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	3 cut(s)	31, 333, 889
BstDEI	CTNAG	3 cut(s)	97, 309, 627
BstF5I	GGATG	2 cut(s)	63, 133
BstKTI	GATC	4 cut(s)	421, 454, 487, 583
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	4 cut(s)	418, 451, 484, 580
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 533, 542, 602, 737, 866, 888
BstSFI	CTRYAG	2 cut(s)	109, 363
BstV1I	GCAGC	2 cut(s)	605, 869
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	5 cut(s)	283, 307, 468, 882, 891
BtsCI	GGATG	2 cut(s)	63, 133
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	105, 415
Cac8I	GCNNGC	3 cut(s)	31, 333, 889
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr10I	RCCGGY	4 cut(s)	279, 383, 887, 1002
Cfr13I	GGNCC	2 cut(s)	623, 683
Csp6I	GTAC	2 cut(s)	770, 848
CviAII	CATG	3 cut(s)	571, 667, 884
CviQI	GTAC	2 cut(s)	770, 848
DdeI	CTNAG	3 cut(s)	97, 309, 627
DpnI	GATC	4 cut(s)	420, 453, 486, 582
DpnII	GATC	4 cut(s)	418, 451, 484, 580
DriI	GACNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	3 cut(s)	281, 466, 880
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	623, 683
Eco57I	CTGAAG	4 cut(s)	473, 756, 878, 969
Eco81I	CCTNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	623
FaeI	CATG	3 cut(s)	574, 670, 887
FaqI	GGGAC	2 cut(s)	765, 912
FatI	CATG	3 cut(s)	570, 666, 883
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	469, 594, 858
FokI	GGATG	2 cut(s)	50, 140
Fsp4HI	GCNGC	3 cut(s)	469, 594, 858
FspBI	CTAG	2 cut(s)	348, 776
GluI	GCNGC	3 cut(s)	469, 594, 858
HaeIII	GGCC	5 cut(s)	283, 307, 468, 882, 891
HapII	CCGG	6 cut(s)	280, 304, 384, 888, 983, 1003
Hin1II	CATG	3 cut(s)	574, 670, 887
HinfI	GANTC	7 cut(s)	8, 39, 75, 95, 135, 369, 900
HpaII	CCGG	6 cut(s)	280, 304, 384, 888, 983, 1003
HphI	GGTGA	7 cut(s)	43, 164, 212, 373, 428, 920, 992
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	5 cut(s)	74, 162, 312, 736, 845
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	39, 50, 124
HpyAV	CCTTC	5 cut(s)	197, 248, 313, 902, 944
HpyCH4III	ACNGT	5 cut(s)	152, 316, 766, 799, 830
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	9 cut(s)	263, 408, 527, 568, 593, 810, 839, 869, 970
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 533, 542, 602, 737, 866, 888
HpyF3I	CTNAG	3 cut(s)	97, 309, 627
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	574, 670, 887
KroI	GCCGGC	1 cut(s)	887
KroNI	GCCGGC	1 cut(s)	889
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	418, 451, 484, 580
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	2 cut(s)	605, 869
LweI	GCATC	3 cut(s)	334, 634, 901
MaeI	CTAG	2 cut(s)	348, 776
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	420, 453, 486, 582
MboI	GATC	4 cut(s)	418, 451, 484, 580
MboII	GAAGA	3 cut(s)	303, 479, 950
MfeI	CAATTG	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	882
MluCI	AATT	2 cut(s)	588, 995
MluNI	TGGCCA	1 cut(s)	882
MlyI	GAGTC	4 cut(s)	33, 89, 378, 894
MmeI	TCCRAC	4 cut(s)	185, 529, 613, 857
MnlI	CCTC	5 cut(s)	318, 545, 548, 711, 772
Mox20I	TGGCCA	1 cut(s)	882
MroNI	GCCGGC	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	882
MseI	TTAA	5 cut(s)	339, 474, 852, 864, 1012
Msp20I	TGGCCA	1 cut(s)	882
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	851
MspI	CCGG	6 cut(s)	280, 304, 384, 888, 983, 1003
MunI	CAATTG	1 cut(s)	588
MwoI	GCNNNNNNNGC	7 cut(s)	30, 533, 542, 602, 737, 866, 888
NaeI	GCCGGC	1 cut(s)	889
NdeII	GATC	4 cut(s)	418, 451, 484, 580
NgoMIV	GCCGGC	1 cut(s)	887
NlaIII	CATG	3 cut(s)	574, 670, 887
NlaIV	GGNNCC	2 cut(s)	624, 934
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	889
PfeI	GAWTC	3 cut(s)	8, 75, 135
PkrI	GCNGC	3 cut(s)	470, 595, 859
PleI	GAGTC	4 cut(s)	33, 89, 377, 894
PpsI	GAGTC	4 cut(s)	33, 89, 377, 894
PpuMI	RGGWCCY	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	623
PspN4I	GGNNCC	2 cut(s)	624, 934
PspPI	GGNCC	2 cut(s)	623, 683
PspPPI	RGGWCCY	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	734
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	771, 849
RsaNI	GTAC	2 cut(s)	770, 848
SaqAI	TTAA	5 cut(s)	339, 474, 852, 864, 1012
SatI	GCNGC	3 cut(s)	469, 594, 858
Sau3AI	GATC	4 cut(s)	418, 451, 484, 580
Sau96I	GGNCC	2 cut(s)	623, 683
ScaI	AGTACT	1 cut(s)	849
SchI	GAGTC	4 cut(s)	33, 89, 378, 894
SfaNI	GCATC	3 cut(s)	334, 634, 901
SfcI	CTRYAG	2 cut(s)	109, 363
SfiI	GGCCNNNNNGGCC	1 cut(s)	888
SgrAI	CRCCGGYG	1 cut(s)	1002
SinI	GGWCC	2 cut(s)	623, 683
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	2 cut(s)	588, 995
SsiI	CCGC	5 cut(s)	5, 469, 502, 773, 973
SspMI	CTAG	2 cut(s)	348, 776
TaaI	ACNGT	5 cut(s)	152, 316, 766, 799, 830
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	588, 995
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	3 cut(s)	8, 75, 135
Tru1I	TTAA	5 cut(s)	339, 474, 852, 864, 1012
Tru9I	TTAA	5 cut(s)	339, 474, 852, 864, 1012
TscAI	CASTG	2 cut(s)	105, 415
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	593, 857
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	34, 838
TspRI	CASTG	2 cut(s)	105, 415
Vha464I	CTTAAG	1 cut(s)	851
VpaK11BI	GGWCC	2 cut(s)	623, 683
XapI	RAATTY	1 cut(s)	995
XspI	CTAG	2 cut(s)	348, 776
ZrmI	AGTACT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.