Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013538

Physical Location & Seq

Genomic Coordinates Forward (+)

26287013 .. 26289164

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTGAAAGTTCAGAGAAGGACCTCATGACCACCATGACTAGGAGAGTGGCCTCCATCGCTAACCATCTCAGACCTGTCCATTCACCTCCCAACTGCATCTCAATTTCTCTATCCAATGCTTCCATGAACGACAGCTACCACCGGACTCACGGCGAAGTCTCCACCCACCAAATTGTTTGGGAAAATGTTCGTGACGATTCCTGCGAGGCCTTCACCGACATTGTCTACGAGAAGGCCGTCGGCGAAGCCATAGCAAAGATTACGATTAATAGGCCGGAGAGAAGAAATGCGTTCCGGCCTCAGACAGTTAAGGAGCTCATTCGCGCGTTTAACGATGCCAGGGACGATGGTTCCATAGGCGTCATCATTCTTACTGGGAAGGGAACCAAGGCATTCTGTAGTGGGGGTGATCAGGCTTTGAGAGGCAAAGATGGTTATGCTGATTATGAAGATTTTGGTCGTCTTAATGTTCTAGATTTGCAGGTCCAGATTCGTCGTCTTCCGAAACCAGTAATAGCCATGGTGGCAGGTTATGCTGTTGGGGGAGGGCATATATTGCACATGGTCTGTGATCTTACCATCGCAGCCGACAATGCTATTTTTGGCCAAACTGGTCCTAAGGTTGGAAGCTTCGACGCTGGTTATGGGAGTTCCATCATGTCCCGTTTGGTTGGGCCTAAAAAAGCACGGGAAATGTGGTTTCTGACAAGGTTTTACACAGCTGTTGAAGCTGAGAAAATAGGACTTGTTAACACTGTTGTACCGCTAGAGAGTTTGGAGCAAGAAACGGTTAAATGGTGTAGAGAAATCCTAAGAAACAGCCCGACTGCAATTCGAGTGCTGAAATCAGCTCTTAATGCAGTTGACGATGGTCATGCTGGACTGCAGCAACTTGCTGGAGATGCCACGCTCTTATTCTATGGCACTGAGGAAGGTAATGAGGGGAAGACAGCATATATGCAGCGTAGACGTCCAGATTTCTCAAAGTTTCCCAGGAGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008935 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

ECH_1

Protein Analysis

336

Amino Acids

36.96

Weight (kDa)

8.21

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60550
fragaria_vesca	FvH4_4g34130 FvH4_4g34130 FvH4_4g34130
malus_domestica	MD13G1094000.v1.1 MD16G1095300.v1.1
prunus_persica	Prupe.1G251300_v2.0.a1
pyrus_communis	pycom13g08190
rosa_chinensis	RchiOBHm_Chr4g0443641
rosa_laevigata	RLG00000005906
rosa_multiflora	Rmu_sc0001118.1_g000011 Rmu_sc0033917.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384190
rosa_samantha	Rh4AG405800 Rh4BG416800 Rh4CG431300 Rh4DG412500
rosa_wichuraiana	Rw4G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	976
Acc36I	ACCTGC	2 cut(s)	475, 521
AccI	GTMKAC	2 cut(s)	228, 970
AccII	CGCG	2 cut(s)	327, 329
AciI	CCGC	1 cut(s)	767
AcoI	YGGCCR	1 cut(s)	607
AcyI	GRCGYC	2 cut(s)	363, 973
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	2 cut(s)	42, 626
AgsI	TTSAA	1 cut(s)	731
AjnI	CCWGG	2 cut(s)	341, 995
AluBI	AGCT	6 cut(s)	138, 319, 633, 725, 734, 854
AluI	AGCT	6 cut(s)	138, 319, 633, 725, 734, 854
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	166, 994
AoxI	GGCC	7 cut(s)	51, 210, 237, 275, 299, 607, 677
ApeKI	GCWGC	3 cut(s)	587, 889, 964
AseI	ATTAAT	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	22, 487, 617, 677
AsuHPI	GGTGA	3 cut(s)	78, 208, 422
AvaII	GGWCC	3 cut(s)	22, 487, 617
AxyI	CCTNAGG	1 cut(s)	621
BaeI	ACNNNNGTAYC	2 cut(s)	747, 780
BalI	TGGCCA	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	494, 956
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	599, 901, 976
BccI	CCATC	7 cut(s)	65, 75, 344, 428, 590, 665, 866
BceAI	ACGGC	2 cut(s)	169, 224
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BciT130I	CCWGG	2 cut(s)	343, 997
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	166, 994
BfaI	CTAG	3 cut(s)	42, 476, 770
BfmI	CTRYAG	2 cut(s)	400, 887
BfuAI	ACCTGC	2 cut(s)	475, 521
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	3 cut(s)	588, 890, 965
BlsI	GCNGC	3 cut(s)	589, 891, 966
Bme1390I	CCNGG	2 cut(s)	343, 997
Bme18I	GGWCC	3 cut(s)	22, 487, 617
BmgT120I	GGNCC	4 cut(s)	22, 487, 617, 677
BmiI	GGNNCC	2 cut(s)	355, 388
BmrFI	CCNGG	2 cut(s)	343, 997
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	3 cut(s)	108, 328, 895
BmuI	ACTGGG	1 cut(s)	387
BoxI	GACNNNNGTC	1 cut(s)	873
BpiI	GAAGAC	2 cut(s)	494, 956
BpmI	CTGGAG	1 cut(s)	921
BsaHI	GRCGYC	2 cut(s)	363, 973
BsaI	GGTCTC	1 cut(s)	994
BsaJI	CCNNGG	4 cut(s)	342, 390, 522, 995
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 626
Bse1I	ACTGG	3 cut(s)	382, 512, 619
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	343, 997
BseDI	CCNNGG	4 cut(s)	342, 390, 522, 995
BseLI	CCNNNNNNNGG	2 cut(s)	42, 626
BseMII	CTCAG	4 cut(s)	85, 317, 726, 921
BseNI	ACTGG	3 cut(s)	382, 512, 619
BseXI	GCAGC	3 cut(s)	599, 901, 976
Bsh1236I	CGCG	2 cut(s)	327, 329
BshFI	GGCC	7 cut(s)	53, 212, 239, 277, 301, 609, 679
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	145, 278, 298
BslFI	GGGAC	2 cut(s)	359, 649
BslI	CCNNNNNNNGG	2 cut(s)	42, 626
BsmAI	GTCTC	2 cut(s)	166, 994
BsmFI	GGGAC	2 cut(s)	359, 649
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	7 cut(s)	53, 212, 239, 277, 301, 609, 679
Bso31I	GGTCTC	1 cut(s)	994
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	412, 574
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	7 cut(s)	53, 212, 239, 277, 301, 609, 679
BspCNI	CTCAG	4 cut(s)	84, 316, 727, 922
BspFNI	CGCG	2 cut(s)	327, 329
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	355, 388
BspMAI	CTGCAG	1 cut(s)	891
BspMI	ACCTGC	2 cut(s)	475, 521
BspTNI	GGTCTC	1 cut(s)	994
BsrI	ACTGG	3 cut(s)	382, 512, 619
BssECI	CCNNGG	4 cut(s)	342, 390, 522, 995
BssMI	GATC	2 cut(s)	412, 574
BssNI	GRCGYC	2 cut(s)	363, 973
BssT1I	CCWWGG	2 cut(s)	390, 522
Bst2UI	CCWGG	2 cut(s)	343, 997
Bst4CI	ACNGT	3 cut(s)	310, 760, 793
BstACI	GRCGYC	2 cut(s)	363, 973
BstAPI	GCANNNNNTGC	2 cut(s)	536, 559
BstDEI	CTNAG	6 cut(s)	71, 303, 621, 735, 815, 930
BstDSI	CCRYGG	1 cut(s)	522
BstFNI	CGCG	2 cut(s)	327, 329
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	415, 577
BstMAI	GTCTC	2 cut(s)	166, 994
BstMBI	GATC	2 cut(s)	412, 574
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 527, 536, 559, 596, 731, 860, 905
BstNI	CCWGG	2 cut(s)	343, 997
BstPAI	GACNNNNGTC	1 cut(s)	873
BstSCI	CCNGG	2 cut(s)	341, 995
BstSFI	CTRYAG	2 cut(s)	400, 887
BstUI	CGCG	2 cut(s)	327, 329
BstV1I	GCAGC	3 cut(s)	599, 901, 976
BstV2I	GAAGAC	2 cut(s)	494, 956
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	7 cut(s)	53, 212, 239, 277, 301, 609, 679
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	2 cut(s)	43, 568
BtsIMutI	CAGTG	2 cut(s)	756, 927
BveI	ACCTGC	2 cut(s)	475, 521
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	4 cut(s)	22, 487, 617, 677
CseI	GACGC	2 cut(s)	352, 647
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	7 cut(s)	28, 37, 127, 523, 565, 661, 878
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	6 cut(s)	71, 303, 621, 735, 815, 930
DpnI	GATC	2 cut(s)	414, 576
DpnII	GATC	2 cut(s)	412, 574
EaeI	YGGCCR	1 cut(s)	607
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	390, 522
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	994
Eco47I	GGWCC	3 cut(s)	22, 487, 617
Eco53kI	GAGCTC	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	341, 995
EcoT14I	CCWWGG	2 cut(s)	390, 522
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	390, 522
FaeI	CATG	7 cut(s)	31, 40, 130, 526, 568, 664, 881
FaqI	GGGAC	2 cut(s)	359, 649
FatI	CATG	7 cut(s)	27, 36, 126, 522, 564, 660, 877
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	228, 970
Fnu4HI	GCNGC	3 cut(s)	588, 890, 965
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	588, 890, 965
FspBI	CTAG	3 cut(s)	42, 476, 770
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	588, 890, 965
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	7 cut(s)	53, 212, 239, 277, 301, 609, 679
HapII	CCGG	3 cut(s)	145, 278, 298
HgaI	GACGC	2 cut(s)	352, 647
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	2 cut(s)	363, 973
Hin1II	CATG	7 cut(s)	31, 40, 130, 526, 568, 664, 881
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	754, 868
HindII	GTYRAC	2 cut(s)	754, 868
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	3 cut(s)	148, 200, 493
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	3 cut(s)	145, 278, 298
HphI	GGTGA	3 cut(s)	78, 208, 422
Hpy166II	GTNNAC	4 cut(s)	229, 754, 868, 971
Hpy188I	TCNGA	5 cut(s)	16, 74, 306, 507, 708
Hpy188III	TCNNGA	5 cut(s)	28, 194, 476, 490, 977
Hpy8I	GTNNAC	4 cut(s)	229, 754, 868, 971
Hpy99I	CGWCG	3 cut(s)	245, 501, 641
HpyAV	CCTTC	5 cut(s)	13, 223, 229, 376, 929
HpyCH4III	ACNGT	3 cut(s)	310, 760, 793
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	7 cut(s)	99, 484, 562, 833, 863, 889, 964
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 527, 536, 559, 596, 731, 860, 905
HpyF3I	CTNAG	6 cut(s)	71, 303, 621, 735, 815, 930
HpySE526I	ACGT	1 cut(s)	973
Hsp92I	GRCGYC	2 cut(s)	363, 973
Hsp92II	CATG	7 cut(s)	31, 40, 130, 526, 568, 664, 881
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	2 cut(s)	412, 574
LmnI	GCTCC	2 cut(s)	316, 781
Lsp1109I	GCAGC	3 cut(s)	599, 901, 976
LweI	GCATC	3 cut(s)	108, 328, 895
MaeI	CTAG	3 cut(s)	42, 476, 770
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	414, 576
MboI	GATC	2 cut(s)	412, 574
MboII	GAAGA	4 cut(s)	297, 464, 494, 961
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	609
MluCI	AATT	3 cut(s)	105, 174, 834
MluNI	TGGCCA	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	9 cut(s)	35, 64, 99, 202, 312, 419, 542, 925, 937
Mox20I	TGGCCA	1 cut(s)	609
MroXI	GAANNNNTTC	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	8 cut(s)	270, 312, 333, 468, 753, 795, 858, 1006
Msp20I	TGGCCA	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	3 cut(s)	145, 278, 298
MspR9I	CCNGG	2 cut(s)	343, 997
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	343, 997
MvnI	CGCG	2 cut(s)	327, 329
MwoI	GCNNNNNNNGC	8 cut(s)	59, 527, 536, 559, 596, 731, 860, 905
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	412, 574
NlaIII	CATG	7 cut(s)	31, 40, 130, 526, 568, 664, 881
NlaIV	GGNNCC	2 cut(s)	355, 388
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 237
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	200, 493
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	589, 891, 966
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	873
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	341, 995
PspGI	CCWGG	2 cut(s)	341, 995
PspN4I	GGNNCC	2 cut(s)	355, 388
PspPI	GGNCC	4 cut(s)	22, 487, 617, 677
PspPPI	RGGWCCY	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	122, 154
PstI	CTGCAG	1 cut(s)	891
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	8 cut(s)	270, 312, 333, 468, 753, 795, 858, 1006
SatI	GCNGC	3 cut(s)	588, 890, 965
Sau3AI	GATC	2 cut(s)	412, 574
Sau96I	GGNCC	4 cut(s)	22, 487, 617, 677
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	343, 997
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	108, 328, 895
SfcI	CTRYAG	2 cut(s)	400, 887
SinI	GGWCC	3 cut(s)	22, 487, 617
Sse9I	AATT	3 cut(s)	105, 174, 834
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	767
SspMI	CTAG	3 cut(s)	42, 476, 770
SstI	GAGCTC	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	341, 995
StyI	CCWWGG	2 cut(s)	390, 522
TaaI	ACNGT	3 cut(s)	310, 760, 793
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	2 cut(s)	636, 838
TasI	AATT	3 cut(s)	105, 174, 834
TfiI	GAWTC	2 cut(s)	200, 493
Tru1I	TTAA	8 cut(s)	270, 312, 333, 468, 753, 795, 858, 1006
Tru9I	TTAA	8 cut(s)	270, 312, 333, 468, 753, 795, 858, 1006
TscAI	CASTG	2 cut(s)	763, 934
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	587, 889, 964
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	143, 465
TspRI	CASTG	2 cut(s)	763, 934
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	3 cut(s)	22, 487, 617
VspI	ATTAAT	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	228, 970
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	42, 476, 770
ZraI	GACGTC	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.