Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013538

Physical Location & Seq

Genomic Coordinates Forward (+)

32083512 .. 32086472

Gene Structure 2961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34130.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTGAAAGTACGGACATGAACAGAGTGAACAGAAGAATGGCCTCAATCTCCAAACATCTCACTCCGACCAATCCACTTCCCAGCTCCATTACTCTGTCCCACACTTCTTCCATGGACGACAGCTACCATCGCACCCACGGCCAAGTCCCGACTCACCCAGTTGTTTGGGAAGCTGCTATTGACGAGTCTGGTAAGGAGTTCACTGACATTATCTACGAGAAATCCGTCGGAGAAGGAATAGCCAAGATTACTATTGATAGGCCGGAGAGAAGGAACGCGTTCCGGCCGCAGACGATTAAGGAGCTGATCCGGGCTTTTAGTGACGCCAGGGACGATACTTCCATTGGCGTCATAATTCTTACTGGGAAGGGAACCAAGGCATTTTGTAGCGGTGGCGATCAGGCTTTGAGAAGCAAAGATGGTTATTCTGATTTTGAAAATTTTGGTCGTCTTAATGTTTTAGACCTTCAGGTTCAGATTCGTCGTCTTCCAAAGCCAGTAATAGCCATGGTGGCTGGTTATGCTGTTGGGGGAGGGCATGTGTTGCACATGGTTTGTGACCTAACCATTGCAGCAGACAATGCCATTTTTGGTCAAACTGGCCCTAAGGTTGGAAGCTTTGATGCTGGTTATGGGAGTTCGATCATGTCTCGCTTGGTCGGGCCGAAAAAAGCACGTGAAATGTGGTTTCTAGCAAGGTTTTACACAGCTGCTGAAGCAGAGAAAATGGGACTTGTAAACACTGTTGTACCGCTTGAGAATTTAGAGCAAGAGACGGTTAAATGGTGCCGAGAAATCCTAAGAAACAGCCCAACTGCAATTCGGGTGCTGAAATCATCTCTTAATGCAGTAGATGATGGTCATGCTGGACTCCAGGAACTTGGTGGAAATGCAACACTCATATTCTATGGTACTGAGGAAGGAAATGAAGGGAAGACAGCATATGTGCAACGTCGACGTCCAGATTTCACAAAGTTCCCCAGGCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008935 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

ECH_1

Protein Analysis

332

Amino Acids

36.44

Weight (kDa)

8.34

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	79 - 256	1.1e-60	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	82 - 253	1.6e-20	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60550
fragaria_vesca	FvH4_4g34130 FvH4_4g34130 FvH4_4g34130
malus_domestica	MD13G1094000.v1.1 MD16G1095300.v1.1
prunus_persica	Prupe.1G251300_v2.0.a1
pyrus_communis	pycom13g08190
rosa_chinensis	RchiOBHm_Chr4g0443641
rosa_laevigata	RLG00000005906
rosa_multiflora	Rmu_sc0001118.1_g000011 Rmu_sc0033917.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384190
rosa_samantha	Rh4AG405800 Rh4BG416800 Rh4CG431300 Rh4DG412500
rosa_wichuraiana	Rw4G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	964
AccB1I	GGYRCC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	958
AccII	CGCG	1 cut(s)	281
AciI	CCGC	3 cut(s)	290, 393, 755
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	2 cut(s)	142, 287
AcsI	RAATTY	2 cut(s)	442, 763
AcuI	CTGAAG	2 cut(s)	455, 738
AcvI	CACGTG	1 cut(s)	680
AcyI	GRCGYC	3 cut(s)	327, 351, 961
AfaI	GTAC	3 cut(s)	13, 753, 916
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	440
AjnI	CCWGG	3 cut(s)	329, 876, 983
AluBI	AGCT	6 cut(s)	87, 126, 176, 307, 621, 713
AluI	AGCT	6 cut(s)	87, 126, 176, 307, 621, 713
Alw26I	GTCTC	2 cut(s)	657, 770
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	6 cut(s)	42, 142, 263, 287, 604, 665
ApeKI	GCWGC	3 cut(s)	176, 575, 713
ApoI	RAATTY	2 cut(s)	442, 763
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	605, 665
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
BanI	GGYRCC	1 cut(s)	789
BbrPI	CACGTG	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	482, 944
BbvI	GCAGC	3 cut(s)	163, 587, 700
BccI	CCATC	3 cut(s)	138, 416, 854
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	3 cut(s)	331, 878, 985
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	657, 770
BfaI	CTAG	1 cut(s)	695
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	4 cut(s)	177, 290, 576, 714
BlsI	GCNGC	4 cut(s)	178, 291, 577, 715
Bme1390I	CCNGG	4 cut(s)	314, 331, 878, 985
BmgT120I	GGNCC	2 cut(s)	605, 665
BmiI	GGNNCC	2 cut(s)	376, 791
BmrFI	CCNGG	4 cut(s)	314, 331, 878, 985
BmrI	ACTGGG	2 cut(s)	155, 375
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	2 cut(s)	155, 375
BpiI	GAAGAC	2 cut(s)	482, 944
BpmI	CTGGAG	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	680
BsaHI	GRCGYC	3 cut(s)	327, 351, 961
BsaJI	CCNNGG	6 cut(s)	114, 139, 330, 378, 510, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	4 cut(s)	161, 370, 500, 607
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	331, 878, 985
BseDI	CCNNGG	6 cut(s)	114, 139, 330, 378, 510, 983
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	4 cut(s)	161, 370, 500, 607
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	163, 587, 700
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	6 cut(s)	44, 144, 265, 289, 606, 667
BshNI	GGYRCC	1 cut(s)	789
BsiEI	CGRYCG	1 cut(s)	290
BsiSI	CCGG	3 cut(s)	266, 286, 313
BslFI	GGGAC	4 cut(s)	85, 134, 347, 747
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	657, 770
BsmBI	CGTCTC	1 cut(s)	770
BsmFI	GGGAC	4 cut(s)	85, 134, 347, 747
BsnI	GGCC	6 cut(s)	44, 144, 265, 289, 606, 667
Bsp143I	GATC	3 cut(s)	309, 400, 645
Bsp19I	CCATGG	2 cut(s)	114, 510
BspACI	CCGC	3 cut(s)	290, 393, 755
BspANI	GGCC	6 cut(s)	44, 144, 265, 289, 606, 667
BspCNI	CTCAG	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	376, 791
BspPI	GGATC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	4 cut(s)	161, 370, 500, 607
BssECI	CCNNGG	6 cut(s)	114, 139, 330, 378, 510, 983
BssMI	GATC	3 cut(s)	309, 400, 645
BssNI	GRCGYC	3 cut(s)	327, 351, 961
BssT1I	CCWWGG	3 cut(s)	114, 378, 510
Bst2UI	CCWGG	3 cut(s)	331, 878, 985
Bst4CI	ACNGT	2 cut(s)	748, 781
BstACI	GRCGYC	3 cut(s)	327, 351, 961
BstAPI	GCANNNNNTGC	2 cut(s)	547, 584
BstBAI	YACGTR	1 cut(s)	680
BstDEI	CTNAG	3 cut(s)	609, 803, 918
BstDSI	CCRYGG	3 cut(s)	114, 139, 510
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	3 cut(s)	312, 403, 648
BstMAI	GTCTC	2 cut(s)	657, 770
BstMBI	GATC	3 cut(s)	309, 400, 645
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	7 cut(s)	132, 141, 515, 524, 547, 584, 719
BstNI	CCWGG	3 cut(s)	331, 878, 985
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	4 cut(s)	312, 329, 876, 983
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	163, 587, 700
BstV2I	GAAGAC	2 cut(s)	482, 944
BstXI	CCANNNNNNTGG	2 cut(s)	168, 884
BstZI	CGGCCG	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	6 cut(s)	44, 144, 265, 289, 606, 667
BtgI	CCRYGG	3 cut(s)	114, 139, 510
BtgZI	GCGATG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	204, 744
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr13I	GGNCC	2 cut(s)	605, 665
CseI	GACGC	2 cut(s)	335, 340
Csp6I	GTAC	3 cut(s)	12, 752, 915
CviAII	CATG	7 cut(s)	19, 115, 511, 542, 553, 649, 866
CviQI	GTAC	3 cut(s)	12, 752, 915
DdeI	CTNAG	3 cut(s)	609, 803, 918
DpnI	GATC	3 cut(s)	311, 402, 647
DpnII	GATC	3 cut(s)	309, 400, 645
EaeI	YGGCCR	2 cut(s)	142, 287
EagI	CGGCCG	1 cut(s)	287
EclXI	CGGCCG	1 cut(s)	287
Eco130I	CCWWGG	3 cut(s)	114, 378, 510
Eco52I	CGGCCG	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	455, 738
Eco72I	CACGTG	1 cut(s)	680
Eco81I	CCTNAGG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	329, 876, 983
EcoT14I	CCWWGG	3 cut(s)	114, 378, 510
ErhI	CCWWGG	3 cut(s)	114, 378, 510
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	7 cut(s)	22, 118, 514, 545, 556, 652, 869
FaqI	GGGAC	4 cut(s)	85, 134, 347, 747
FatI	CATG	7 cut(s)	18, 114, 510, 541, 552, 648, 865
FauNDI	CATATG	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	958
Fnu4HI	GCNGC	4 cut(s)	177, 290, 576, 714
Fsp4HI	GCNGC	4 cut(s)	177, 290, 576, 714
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	4 cut(s)	177, 290, 576, 714
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	860
HaeIII	GGCC	6 cut(s)	44, 144, 265, 289, 606, 667
HapII	CCGG	3 cut(s)	266, 286, 313
HgaI	GACGC	2 cut(s)	335, 340
Hin1I	GRCGYC	3 cut(s)	327, 351, 961
Hin1II	CATG	7 cut(s)	22, 118, 514, 545, 556, 652, 869
HincII	GTYRAC	1 cut(s)	959
HindII	GTYRAC	1 cut(s)	959
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	4 cut(s)	154, 188, 481, 873
HpaII	CCGG	3 cut(s)	266, 286, 313
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	4 cut(s)	31, 204, 742, 959
Hpy188I	TCNGA	4 cut(s)	69, 233, 433, 480
Hpy188III	TCNNGA	2 cut(s)	151, 965
Hpy8I	GTNNAC	4 cut(s)	31, 204, 742, 959
Hpy99I	CGWCG	4 cut(s)	233, 489, 960, 963
HpyAV	CCTTC	6 cut(s)	230, 267, 364, 479, 917, 926
HpyCH4III	ACNGT	2 cut(s)	748, 781
HpyCH4IV	ACGT	3 cut(s)	679, 955, 961
HpyCH4V	TGCA	6 cut(s)	550, 575, 821, 851, 896, 952
HpyF10VI	GCNNNNNNNGC	7 cut(s)	132, 141, 515, 524, 547, 584, 719
HpyF3I	CTNAG	3 cut(s)	609, 803, 918
HpySE526I	ACGT	3 cut(s)	679, 955, 961
Hsp92I	GRCGYC	3 cut(s)	327, 351, 961
Hsp92II	CATG	7 cut(s)	22, 118, 514, 545, 556, 652, 869
Kzo9I	GATC	3 cut(s)	309, 400, 645
LmnI	GCTCC	2 cut(s)	92, 304
Lsp1109I	GCAGC	3 cut(s)	163, 587, 700
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	3 cut(s)	679, 955, 961
MaeIII	GTNAC	2 cut(s)	323, 560
MalI	GATC	3 cut(s)	311, 402, 647
MboI	GATC	3 cut(s)	309, 400, 645
MboII	GAAGA	4 cut(s)	48, 102, 482, 949
MluCI	AATT	4 cut(s)	357, 442, 763, 822
MluI	ACGCGT	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	148, 197, 867
MmeI	TCCRAC	3 cut(s)	92, 211, 595
MnlI	CCTC	3 cut(s)	55, 530, 913
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	5 cut(s)	300, 456, 783, 846, 994
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	3 cut(s)	266, 286, 313
MspR9I	CCNGG	4 cut(s)	314, 331, 878, 985
MvaI	CCWGG	3 cut(s)	331, 878, 985
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	7 cut(s)	132, 141, 515, 524, 547, 584, 719
NciI	CCSGG	1 cut(s)	314
NcoI	CCATGG	2 cut(s)	114, 510
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	3 cut(s)	309, 400, 645
NlaIII	CATG	7 cut(s)	22, 118, 514, 545, 556, 652, 869
NlaIV	GGNNCC	2 cut(s)	376, 791
NmeAIII	GCCGAG	1 cut(s)	818
NmuCI	GTSAC	2 cut(s)	323, 560
NspI	RCATGY	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 333
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	876
PkrI	GCNGC	4 cut(s)	178, 291, 577, 715
PleI	GAGTC	3 cut(s)	148, 196, 867
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
PpsI	GAGTC	3 cut(s)	148, 196, 867
Ppu21I	YACGTR	1 cut(s)	680
Psp6I	CCWGG	3 cut(s)	329, 876, 983
PspCI	CACGTG	1 cut(s)	680
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	3 cut(s)	329, 876, 983
PspN4I	GGNNCC	2 cut(s)	376, 791
PspPI	GGNCC	2 cut(s)	605, 665
PstNI	CAGNNNCTG	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	3 cut(s)	13, 753, 916
RsaNI	GTAC	3 cut(s)	12, 752, 915
SalI	GTCGAC	1 cut(s)	957
SaqAI	TTAA	5 cut(s)	300, 456, 783, 846, 994
SatI	GCNGC	4 cut(s)	177, 290, 576, 714
Sau3AI	GATC	3 cut(s)	309, 400, 645
Sau96I	GGNCC	2 cut(s)	605, 665
SchI	GAGTC	3 cut(s)	148, 197, 867
ScrFI	CCNGG	4 cut(s)	314, 331, 878, 985
SfaNI	GCATC	1 cut(s)	616
SgrDI	CGTCGACG	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	4 cut(s)	357, 442, 763, 822
SsiI	CCGC	3 cut(s)	290, 393, 755
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	4 cut(s)	312, 329, 876, 983
StyI	CCWWGG	3 cut(s)	114, 378, 510
TaaI	ACNGT	2 cut(s)	748, 781
TaiI	ACGT	3 cut(s)	682, 958, 964
TaqI	TCGA	2 cut(s)	644, 958
TasI	AATT	4 cut(s)	357, 442, 763, 822
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	5 cut(s)	300, 456, 783, 846, 994
Tru9I	TTAA	5 cut(s)	300, 456, 783, 846, 994
TscAI	CASTG	2 cut(s)	211, 751
TseFI	GTSAC	2 cut(s)	323, 560
TseI	GCWGC	3 cut(s)	176, 575, 713
Tsp45I	GTSAC	2 cut(s)	323, 560
TspDTI	ATGAA	2 cut(s)	35, 945
TspGWI	ACGGA	2 cut(s)	29, 217
TspRI	CASTG	2 cut(s)	211, 751
XapI	RAATTY	2 cut(s)	442, 763
XceI	RCATGY	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XmiI	GTMKAC	1 cut(s)	958
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	695
ZraI	GACGTC	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.