Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013538

Physical Location & Seq

Genomic Coordinates Forward (+)

70744563 .. 70747146

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG405800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTCAAAGTACAGAGTCAGAGAAGGACCTCATGAACAGAGTGAACAGAAGAATGGCCTCCATCTCCAACCATCTGACTCCGATCAGTACAATTCCCAACTCCATTACTCTGTCGCACACATCTTCCATGGACGACAGCTACCACCGGACCCACGGCCAAGTCCCGACTCACCAAGTTGTCTGGGAAGCTGCTGTTGACGAGTCCGGCAAGGAGTTCACGGACATTATCTACGAAAAATCCGTCGGCGAAGGAATAGCAAAGATTACGATTAATAGGCCGGAGAGAAGGAATGCGTTCCGGCCGCAGACGATCAAGGAGCTGATCCGGGCTTTTAATGATGCCAGGGACGACAGTTCCATTGGCGTTATTGTTCTTACTGGGAAGGGAACCAAGGCATTTTGTAGCGGTGGTGATCAGGCTTTGAGAAGCACGGATGGTTATTCTGATTTTGAAAATTTTGGTCGTCTTAATGTTTTAGACCTTCAGGTTCAGATTCGTCGTCTTCCAAAGCCAGTAATTGCCATGGTGGCTGGTTATGCTGTTGGGGGAGGGCATGTGTTGCACATGGTATGTGATCTAACCATTGCAGCAGACAATGCTATTTTTGGTCAAACTGGCCCTAAGGTTGGAAGCTTTGATGCTGGTTATGGGAGTTCGATCATGTCCCGCTTGGTAACAAGAACTTCCTTGTGTCGTATACTTGATATCCGTCTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008935 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016829 GO:0016830 GO:0016833 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

ECH_1

Protein Analysis

240

Amino Acids

26.27

Weight (kDa)

7.78

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	84 - 229	3e-46	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	87 - 227	7.4e-21	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60550
fragaria_vesca	FvH4_4g34130 FvH4_4g34130 FvH4_4g34130
malus_domestica	MD13G1094000.v1.1 MD16G1095300.v1.1
prunus_persica	Prupe.1G251300_v2.0.a1
pyrus_communis	pycom13g08190
rosa_chinensis	RchiOBHm_Chr4g0443641
rosa_laevigata	RLG00000005906
rosa_multiflora	Rmu_sc0001118.1_g000011 Rmu_sc0033917.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384190
rosa_samantha	Rh4AG405800 Rh4BG416800 Rh4CG431300 Rh4DG412500
rosa_wichuraiana	Rw4G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	700
AciI	CCGC	3 cut(s)	305, 408, 670
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	2 cut(s)	157, 302
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	13, 91
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	4 cut(s)	141, 191, 322, 636
AluI	AGCT	4 cut(s)	141, 191, 322, 636
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	5 cut(s)	57, 157, 278, 302, 619
ApeKI	GCWGC	2 cut(s)	191, 590
ApoI	RAATTY	1 cut(s)	457
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	28, 150, 620
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	164, 425
AvaII	GGWCC	2 cut(s)	28, 150
AxyI	CCTNAGG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	178, 602
BccI	CCATC	3 cut(s)	71, 81, 431
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	346
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	329
BglI	GCCNNNNNGGC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	192, 305, 591
BlsI	GCNGC	3 cut(s)	193, 306, 592
Bme1390I	CCNGG	2 cut(s)	329, 346
Bme18I	GGWCC	2 cut(s)	28, 150
BmgT120I	GGNCC	3 cut(s)	28, 150, 620
BmiI	GGNNCC	2 cut(s)	152, 391
BmrFI	CCNGG	2 cut(s)	329, 346
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	331, 631
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	129, 154, 345, 393, 525
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	3 cut(s)	385, 515, 622
Bse21I	CCTNAGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	5 cut(s)	129, 154, 345, 393, 525
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	385, 515, 622
BseX3I	CGGCCG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	178, 602
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	5 cut(s)	59, 159, 280, 304, 621
BsiEI	CGRYCG	1 cut(s)	305
BsiSI	CCGG	5 cut(s)	148, 207, 281, 301, 328
BslFI	GGGAC	3 cut(s)	149, 362, 652
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmFI	GGGAC	3 cut(s)	149, 362, 652
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	5 cut(s)	59, 159, 280, 304, 621
Bsp143I	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
Bsp19I	CCATGG	2 cut(s)	129, 525
BspACI	CCGC	3 cut(s)	305, 408, 670
BspANI	GGCC	5 cut(s)	59, 159, 280, 304, 621
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	152, 391
BspPI	GGATC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	385, 515, 622
BssECI	CCNNGG	5 cut(s)	129, 154, 345, 393, 525
BssMI	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
BssNAI	GTATAC	1 cut(s)	701
BssT1I	CCWWGG	3 cut(s)	129, 393, 525
Bst1107I	GTATAC	1 cut(s)	701
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	356
BstAPI	GCANNNNNTGC	2 cut(s)	562, 599
BstDEI	CTNAG	2 cut(s)	624, 720
BstDSI	CCRYGG	3 cut(s)	129, 154, 525
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	6 cut(s)	87, 315, 327, 418, 580, 663
BstMBI	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	4 cut(s)	530, 539, 562, 599
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	327, 344
BstV1I	GCAGC	2 cut(s)	178, 602
BstV2I	GAAGAC	1 cut(s)	497
BstZ17I	GTATAC	1 cut(s)	701
BstZI	CGGCCG	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	5 cut(s)	59, 159, 280, 304, 621
BtgI	CCRYGG	3 cut(s)	129, 154, 525
BtsCI	GGATG	1 cut(s)	442
CciI	TCATGA	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	28, 150, 620
Csp6I	GTAC	2 cut(s)	12, 90
CviAII	CATG	6 cut(s)	34, 130, 526, 557, 568, 664
CviQI	GTAC	2 cut(s)	12, 90
DdeI	CTNAG	2 cut(s)	624, 720
DpnI	GATC	6 cut(s)	86, 314, 326, 417, 579, 662
DpnII	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
EaeI	YGGCCR	2 cut(s)	157, 302
EagI	CGGCCG	1 cut(s)	302
EclXI	CGGCCG	1 cut(s)	302
Eco130I	CCWWGG	3 cut(s)	129, 393, 525
Eco32I	GATATC	1 cut(s)	709
Eco47I	GGWCC	2 cut(s)	28, 150
Eco52I	CGGCCG	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	709
EcoT14I	CCWWGG	3 cut(s)	129, 393, 525
ErhI	CCWWGG	3 cut(s)	129, 393, 525
FaeI	CATG	6 cut(s)	37, 133, 529, 560, 571, 667
FaqI	GGGAC	3 cut(s)	149, 362, 652
FatI	CATG	6 cut(s)	33, 129, 525, 556, 567, 663
FauI	CCCGC	1 cut(s)	677
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	192, 305, 591
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	3 cut(s)	192, 305, 591
GluI	GCNGC	3 cut(s)	192, 305, 591
HaeIII	GGCC	5 cut(s)	59, 159, 280, 304, 621
HapII	CCGG	5 cut(s)	148, 207, 281, 301, 328
Hin1II	CATG	6 cut(s)	37, 133, 529, 560, 571, 667
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	634
HinfI	GANTC	5 cut(s)	17, 79, 169, 203, 496
HpaII	CCGG	5 cut(s)	148, 207, 281, 301, 328
HphI	GGTGA	2 cut(s)	164, 425
Hpy166II	GTNNAC	4 cut(s)	46, 199, 219, 701
Hpy188I	TCNGA	6 cut(s)	22, 78, 84, 448, 495, 717
Hpy188III	TCNNGA	2 cut(s)	34, 166
Hpy8I	GTNNAC	4 cut(s)	46, 199, 219, 701
Hpy99I	CGWCG	2 cut(s)	248, 504
HpyAV	CCTTC	5 cut(s)	19, 245, 282, 379, 494
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	565, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	530, 539, 562, 599
HpyF3I	CTNAG	2 cut(s)	624, 720
Hsp92II	CATG	6 cut(s)	37, 133, 529, 560, 571, 667
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	178, 602
LweI	GCATC	2 cut(s)	331, 631
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	6 cut(s)	86, 314, 326, 417, 579, 662
MboI	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
MboII	GAAGA	3 cut(s)	63, 117, 497
MluCI	AATT	3 cut(s)	93, 457, 519
MlyI	GAGTC	4 cut(s)	26, 73, 163, 212
MmeI	TCCRAC	2 cut(s)	93, 610
MnlI	CCTC	3 cut(s)	41, 70, 545
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	3 cut(s)	273, 336, 471
MspI	CCGG	5 cut(s)	148, 207, 281, 301, 328
MspR9I	CCNGG	2 cut(s)	329, 346
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	4 cut(s)	530, 539, 562, 599
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	2 cut(s)	129, 525
NdeII	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
NlaIII	CATG	6 cut(s)	37, 133, 529, 560, 571, 667
NlaIV	GGNNCC	2 cut(s)	152, 391
NspI	RCATGY	1 cut(s)	560
PagI	TCATGA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	3 cut(s)	193, 306, 592
PleI	GAGTC	4 cut(s)	25, 73, 163, 211
PpsI	GAGTC	4 cut(s)	25, 73, 163, 211
PpuMI	RGGWCCY	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	152, 391
PspPI	GGNCC	3 cut(s)	28, 150, 620
PspPPI	RGGWCCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	13, 91
RsaNI	GTAC	2 cut(s)	12, 90
SaqAI	TTAA	3 cut(s)	273, 336, 471
SatI	GCNGC	3 cut(s)	192, 305, 591
Sau3AI	GATC	6 cut(s)	84, 312, 324, 415, 577, 660
Sau96I	GGNCC	3 cut(s)	28, 150, 620
SchI	GAGTC	4 cut(s)	26, 73, 163, 212
ScrFI	CCNGG	2 cut(s)	329, 346
SetI	ASST	8 cut(s)	33, 143, 193, 324, 486, 492, 630, 638
SfaNI	GCATC	2 cut(s)	331, 631
SinI	GGWCC	2 cut(s)	28, 150
Sse9I	AATT	3 cut(s)	93, 457, 519
SsiI	CCGC	3 cut(s)	305, 408, 670
StyD4I	CCNGG	2 cut(s)	327, 344
StyI	CCWWGG	3 cut(s)	129, 393, 525
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	659
TasI	AATT	3 cut(s)	93, 457, 519
TatI	WGTACW	2 cut(s)	11, 89
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	3 cut(s)	273, 336, 471
Tru9I	TTAA	3 cut(s)	273, 336, 471
TseI	GCWGC	2 cut(s)	191, 590
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	4 cut(s)	232, 236, 449, 701
VpaK11BI	GGWCC	2 cut(s)	28, 150
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.