Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003195

Physical Location & Seq

Genomic Coordinates Reverse (-)

23105905 .. 23109534

Gene Structure 3630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGGAAGAGAATGTTACTAGTTCACCTTCAACACCGGTACATAGGCTTAGGCATCGAAGACGTTCTAATGAGGTTGTTACGGATGGGGATAAAGTGAATGCAAGTCCTTTGTTGGTTAATGATCGGAATAAGTACAAATCTTTCATGGTCCGGACCTACTCTACGTTATGGATGATTGGTGGTTTTGTTTTGGTTGTCTACATGGGTCATCTTTATATCACAGCTATGGTTGTTGTTATTCAAATATTTATGGCTAAAGAGTTGTTTAATCTGCTGAGGAAAGCTCCTGAGGATAAATGTCTCCCCTATATTAAACAGCTCAATTGGCACTTCTTTTTCACTGCCATGCTTTTCGTTTATGGACGGATCCTTAGTCAACGGTTAGCCAATACCATGACTGCAGATCAGTTCTTCTATCGGCTAGTCAGCGGCTTAATCAAATACCATATGGCAATCTGTTACTTGTTGTATATTATAGGTTTCATGTGGTTCATTCTCACATTAAAGAAGAAGATGTACAAGTACCAGTTTGGCCAGTATGCTTGGACCCACATGATCTTGATAGTCGTGTTTACTCAATCGTCGTTCACTGTTGCCAACATATTTGAAGGGATCTTCTGGTTTCTTCTCCCAGCATCTTTAATTATAATCAACGACATCTTCGCCTACATTTTCGGTTTCTTCTTTGGAAGAACGCCTTTAATAAAGCTGTCTCCAAAGAAAACATGGGAGGGATTCATCGGAGCCTCTGTGACAACTATCATCTCTGCATTTGTTCTGGCAAATATTTTGGGTCGTTTCCCTTGGTTGACATGCCCACGACAGGATTTGTCCACTGGCTGGCTACAGTGTGACGCTGATCCATTGTTCAAACCTGAACCTTTTGCTTTACCTGCATGGATTCCAGAATGGTTTCCTTGGAAGGAAATGACGATCCTCCCTGTTCAGTGGCATGCTTTATGCCTCGGTTTGTTCGCTTCAATCATAGCACCTTTTGGAGGATTTTTCGCTAGCGGTTTCAAAAGAGCATTCAAAATTAAGGACTTTGGTGATAGTATTCCAGGACATGGTGGAATCACAGATAGAATGGACTGCCAGATGGTTATGGCAGTATTTGCCTACATATATCTTCAATCATTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAGATATTGACGAACCTTACCTTTGAGGAACAACAAGCGCTCTTCGTGAAGTTAGGACAAATGCTGAAGGACAAGCTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0012505 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031984 GO:0032502 GO:0034641 GO:0034654 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0048589 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0080186 GO:0090407 GO:0098827 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

421

Amino Acids

48.66

Weight (kDa)

9.26

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	51 - 381	4.3e-79	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62430 AT4G22340 AT4G22340 AT4G22340 AT4G26770
fragaria_vesca	FvH4_3g01060 FvH4_3g01060 FvH4_3g01060 FvH4_3g01060
malus_domestica	MD05G1357100.v1.1 MD10G1330800.v1.1
prunus_persica	Prupe.4G011700_v2.0.a1 Prupe.4G011700_v2.0.a1
pyrus_communis	pycom05g32310 pycom10g28020
rosa_chinensis	RchiOBHm_Chr5g0001601 RchiOBHm_Chr5g0050181
rosa_laevigata	RLG00000030947
rosa_multiflora	Rmu_sc0006320.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030870 Rroxscaffold_1G00074710
rosa_rugosa	Rorug04G0391300 Rorug05G0259300 Rorug05G0259400 Rorug05G0259500 Rorug05G0259600 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG012800 Rh5AG331000 Rh5BG341700 Rh5CG013800 Rh5CG368200 Rh5DG013600 Rh5DG354500
rosa_wichuraiana	Rw5G001220 Rw5G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	904
AccB7I	CCANNNNNTGG	2 cut(s)	843, 1070
AccI	GTMKAC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	2 cut(s)	432, 1017
AclWI	GGATC	5 cut(s)	364, 377, 623, 857, 931
AcoI	YGGCCR	1 cut(s)	535
AfaI	GTAC	4 cut(s)	42, 137, 521, 527
AfeI	AGCGCT	1 cut(s)	1221
AfiI	CCNNNNNNNGG	4 cut(s)	826, 843, 1001, 1070
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	8 cut(s)	33, 245, 611, 874, 984, 1024, 1036, 1136
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	1063
AluBI	AGCT	5 cut(s)	227, 287, 322, 712, 1258
AluI	AGCT	5 cut(s)	227, 287, 322, 712, 1258
Alw26I	GTCTC	3 cut(s)	308, 720, 1153
AlwI	GGATC	5 cut(s)	364, 377, 623, 857, 931
Aor13HI	TCCGGA	1 cut(s)	153
Aor51HI	AGCGCT	1 cut(s)	1221
AoxI	GGCC	1 cut(s)	535
AsiGI	ACCGGT	1 cut(s)	37
Asp700I	GAANNNNTTC	2 cut(s)	64, 915
AspLEI	GCGC	1 cut(s)	1222
AspS9I	GGNCC	3 cut(s)	151, 156, 549
AsuHPI	GGTGA	2 cut(s)	18, 1064
AsuNHI	GCTAGC	1 cut(s)	1013
AvaII	GGWCC	3 cut(s)	151, 156, 549
AxyI	CCTNAGG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BbsI	GAAGAC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	80, 1096
BciT130I	CCWGG	1 cut(s)	1065
BcoDI	GTCTC	3 cut(s)	308, 720, 1153
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	4 cut(s)	21, 425, 1014, 1178
BfmI	CTRYAG	2 cut(s)	402, 848
BfoI	RGCGCY	1 cut(s)	1223
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	1065
Bme18I	GGWCC	3 cut(s)	151, 156, 549
BmgT120I	GGNCC	3 cut(s)	151, 156, 549
BmiI	GGNNCC	3 cut(s)	371, 551, 748
BmrFI	CCNGG	1 cut(s)	1065
BmsI	GCATC	2 cut(s)	64, 647
BmtI	GCTAGC	1 cut(s)	1017
BpiI	GAAGAC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	2 cut(s)	50, 278
BsaJI	CCNNGG	3 cut(s)	806, 920, 967
BsaWI	WCCGGW	2 cut(s)	37, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	826, 843, 1001, 1070
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	529, 538, 844
Bse21I	CCTNAGG	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	3 cut(s)	806, 920, 967
BseGI	GGATG	2 cut(s)	91, 180
BseLI	CCNNNNNNNGG	4 cut(s)	826, 843, 1001, 1070
BseMII	CTCAG	2 cut(s)	269, 282
BseNI	ACTGG	3 cut(s)	529, 538, 844
BseYI	CCCAGC	1 cut(s)	634
BshFI	GGCC	1 cut(s)	537
BshTI	ACCGGT	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	38, 154
BslI	CCNNNNNNNGG	4 cut(s)	826, 843, 1001, 1070
BsmAI	GTCTC	3 cut(s)	308, 720, 1153
BsmI	GAATGC	2 cut(s)	106, 1031
BsnI	GGCC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
BspACI	CCGC	2 cut(s)	432, 1017
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	2 cut(s)	270, 283
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	371, 551, 748
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	904
BspOI	GCTAGC	1 cut(s)	1017
BspPI	GGATC	5 cut(s)	364, 377, 623, 857, 931
BspQI	GCTCTTC	1 cut(s)	1229
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	3 cut(s)	529, 538, 844
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	806, 920, 967
BssMI	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
BssT1I	CCWWGG	2 cut(s)	806, 920
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	3 cut(s)	384, 595, 852
Bst6I	CTCTTC	2 cut(s)	3, 1229
BstAPI	GCANNNNNTGC	1 cut(s)	1118
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	845, 957, 1015
BstDEI	CTNAG	4 cut(s)	50, 278, 291, 374
BstENI	CCTNNNNNAGG	1 cut(s)	999
BstF5I	GGATG	2 cut(s)	91, 180
BstH2I	RGCGCY	1 cut(s)	1223
BstHHI	GCGC	1 cut(s)	1222
BstKTI	GATC	7 cut(s)	127, 372, 409, 561, 618, 865, 939
BstMAI	GTCTC	3 cut(s)	308, 720, 1153
BstMBI	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 896, 1118
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	2 cut(s)	819, 959
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	2 cut(s)	402, 848
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	2 cut(s)	369, 615
BstYI	RGATCY	2 cut(s)	369, 615
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	91, 180
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	5 cut(s)	342, 591, 837, 857, 956
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	3 cut(s)	845, 957, 1015
CfoI	GCGC	1 cut(s)	1222
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	151, 156, 549
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	4 cut(s)	41, 136, 520, 526
CspAI	ACCGGT	1 cut(s)	37
CviQI	GTAC	4 cut(s)	41, 136, 520, 526
DdeI	CTNAG	4 cut(s)	50, 278, 291, 374
DpnI	GATC	7 cut(s)	126, 371, 408, 560, 617, 864, 938
DpnII	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	3, 1229
EarI	CTCTTC	2 cut(s)	3, 1229
Eco130I	CCWWGG	2 cut(s)	806, 920
Eco47I	GGWCC	3 cut(s)	151, 156, 549
Eco47III	AGCGCT	1 cut(s)	1221
Eco81I	CCTNAGG	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	2 cut(s)	806, 920
ErhI	CCWWGG	2 cut(s)	806, 920
FalI	AAGNNNNNCTT	2 cut(s)	685, 717
FauNDI	CATATG	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	2 cut(s)	98, 187
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	4 cut(s)	21, 425, 1014, 1178
GlaI	GCGC	1 cut(s)	1221
GluI	GCNGC	1 cut(s)	433
GsaI	CCCAGC	1 cut(s)	638
HaeII	RGCGCY	1 cut(s)	1223
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	2 cut(s)	38, 154
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	1 cut(s)	1222
Hin6I	GCGC	1 cut(s)	1220
HinP1I	GCGC	1 cut(s)	1220
HincII	GTYRAC	3 cut(s)	380, 813, 1168
HindII	GTYRAC	3 cut(s)	380, 813, 1168
HinfI	GANTC	3 cut(s)	738, 904, 1077
HpaII	CCGG	2 cut(s)	38, 154
HphI	GGTGA	2 cut(s)	18, 1064
Hpy166II	GTNNAC	8 cut(s)	26, 202, 380, 576, 591, 813, 837, 1168
Hpy188I	TCNGA	2 cut(s)	129, 746
Hpy188III	TCNNGA	5 cut(s)	154, 290, 562, 908, 1228
Hpy8I	GTNNAC	8 cut(s)	26, 202, 380, 576, 591, 813, 837, 1168
Hpy99I	CGWCG	1 cut(s)	589
HpyAV	CCTTC	4 cut(s)	39, 605, 919, 1243
HpyCH4III	ACNGT	3 cut(s)	384, 595, 852
HpyCH4IV	ACGT	2 cut(s)	64, 167
HpyCH4V	TGCA	4 cut(s)	104, 404, 773, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 896, 1118
HpyF3I	CTNAG	4 cut(s)	50, 278, 291, 374
HpySE526I	ACGT	2 cut(s)	64, 167
HspAI	GCGC	1 cut(s)	1220
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
LguI	GCTCTTC	1 cut(s)	1229
LmnI	GCTCC	2 cut(s)	292, 746
LweI	GCATC	2 cut(s)	64, 647
MaeI	CTAG	4 cut(s)	21, 425, 1014, 1178
MaeII	ACGT	2 cut(s)	64, 167
MaeIII	GTNAC	5 cut(s)	16, 79, 461, 754, 854
MalI	GATC	7 cut(s)	126, 371, 408, 560, 617, 864, 938
MboI	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	2 cut(s)	369, 615
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	3 cut(s)	325, 645, 1038
MluNI	TGGCCA	1 cut(s)	537
MnlI	CCTC	9 cut(s)	67, 273, 286, 727, 760, 950, 977, 995, 1201
Mox20I	TGGCCA	1 cut(s)	537
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	2 cut(s)	64, 915
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	8 cut(s)	120, 270, 315, 437, 506, 644, 704, 1041
MslI	CAYNNNNRTG	2 cut(s)	227, 347
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	2 cut(s)	38, 154
MspR9I	CCNGG	1 cut(s)	1065
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	2 cut(s)	106, 1031
MvaI	CCWGG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	3 cut(s)	328, 896, 1118
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
NheI	GCTAGC	1 cut(s)	1013
NlaIV	GGNNCC	3 cut(s)	371, 551, 748
NmuCI	GTSAC	2 cut(s)	754, 854
NspI	RCATGY	2 cut(s)	819, 959
PaeI	GCATGC	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	1229
PctI	GAATGC	2 cut(s)	106, 1031
PdmI	GAANNNNTTC	2 cut(s)	64, 915
PfeI	GAWTC	3 cut(s)	738, 904, 1077
PflMI	CCANNNNNTGG	2 cut(s)	843, 1070
PfoI	TCCNGGA	1 cut(s)	1063
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	1063
PspFI	CCCAGC	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	3 cut(s)	371, 551, 748
PspPI	GGNCC	3 cut(s)	151, 156, 549
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	369, 615
RsaI	GTAC	4 cut(s)	42, 137, 521, 527
RsaNI	GTAC	4 cut(s)	41, 136, 520, 526
RseI	CAYNNNNRTG	2 cut(s)	227, 347
SapI	GCTCTTC	1 cut(s)	1229
SaqAI	TTAA	8 cut(s)	120, 270, 315, 437, 506, 644, 704, 1041
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	7 cut(s)	124, 369, 406, 558, 615, 862, 936
Sau96I	GGNCC	3 cut(s)	151, 156, 549
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	2 cut(s)	64, 647
SfcI	CTRYAG	2 cut(s)	402, 848
SinI	GGWCC	3 cut(s)	151, 156, 549
SmiMI	CAYNNNNRTG	2 cut(s)	227, 347
SpeI	ACTAGT	1 cut(s)	20
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	3 cut(s)	325, 645, 1038
SsiI	CCGC	2 cut(s)	432, 1017
SspI	AATATT	2 cut(s)	249, 790
SspMI	CTAG	4 cut(s)	21, 425, 1014, 1178
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	2 cut(s)	806, 920
TaaI	ACNGT	3 cut(s)	384, 595, 852
TaiI	ACGT	2 cut(s)	67, 170
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	325, 645, 1038
TatI	WGTACW	2 cut(s)	135, 519
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	3 cut(s)	738, 904, 1077
Tru1I	TTAA	8 cut(s)	120, 270, 315, 437, 506, 644, 704, 1041
Tru9I	TTAA	8 cut(s)	120, 270, 315, 437, 506, 644, 704, 1041
TscAI	CASTG	5 cut(s)	349, 598, 844, 857, 956
TseFI	GTSAC	2 cut(s)	754, 854
Tsp45I	GTSAC	2 cut(s)	754, 854
TspDTI	ATGAA	4 cut(s)	136, 475, 484, 730
TspGWI	ACGGA	2 cut(s)	98, 382
TspRI	CASTG	5 cut(s)	349, 598, 844, 857, 956
Van91I	CCANNNNNTGG	2 cut(s)	843, 1070
VpaK11BI	GGWCC	3 cut(s)	151, 156, 549
XagI	CCTNNNNNAGG	1 cut(s)	999
XceI	RCATGY	2 cut(s)	819, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	726
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	2 cut(s)	64, 915
XspI	CTAG	4 cut(s)	21, 425, 1014, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.