Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003195

Physical Location & Seq

Genomic Coordinates Forward (+)

29187809 .. 29192579

Gene Structure 4771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCCGCCTCATATCCAAGCATGCCTGGCTCTACACTGAGATGCTTGCTGCCGAAACCATTGTCTATCAGAAGGACAATCTGGACAGATTCTTGTACTTTCCTTCAGAACAGCATCCTATTGTTCTAGAAATTGGTGGCAGTAATTTAGAAAACCTGGCAAAAGCTACTCAACTTGCTAATATTTACAAATATGATGGGATCAATTTTAAATACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0012505 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031984 GO:0032502 GO:0034641 GO:0034654 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0048589 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0080186 GO:0090407 GO:0098827 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

73

Amino Acids

8.51

Weight (kDa)

5.59

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	3 - 69	5.5e-07	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62430 AT4G22340 AT4G22340 AT4G22340 AT4G26770
fragaria_vesca	FvH4_3g01060 FvH4_3g01060 FvH4_3g01060 FvH4_3g01060
malus_domestica	MD05G1357100.v1.1 MD10G1330800.v1.1
prunus_persica	Prupe.4G011700_v2.0.a1 Prupe.4G011700_v2.0.a1
pyrus_communis	pycom05g32310 pycom10g28020
rosa_chinensis	RchiOBHm_Chr5g0001601 RchiOBHm_Chr5g0050181
rosa_laevigata	RLG00000030947
rosa_multiflora	Rmu_sc0006320.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030870 Rroxscaffold_1G00074710
rosa_rugosa	Rorug04G0391300 Rorug05G0259300 Rorug05G0259400 Rorug05G0259500 Rorug05G0259600 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG012800 Rh5AG331000 Rh5BG341700 Rh5CG013800 Rh5CG368200 Rh5DG013600 Rh5DG354500
rosa_wichuraiana	Rw5G001220 Rw5G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	26, 156
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspS9I	GGNCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	28, 158
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	28, 158
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	28, 158
BmsI	GCATC	2 cut(s)	33, 124
BseBI	CCWGG	2 cut(s)	28, 158
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	209
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	28, 158
BstC8I	GCNNGC	3 cut(s)	7, 24, 48
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	2 cut(s)	28, 158
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	26, 156
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	7, 24, 48
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	3 cut(s)	5, 31, 167
CviKI_1	RGCY	3 cut(s)	5, 31, 167
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DraI	TTTAAA	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	26, 156
FaeI	CATG	1 cut(s)	26
FaiI	YATR	3 cut(s)	14, 24, 195
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	72, 109
Hpy188III	TCNNGA	2 cut(s)	83, 128
HpyAV	CCTTC	2 cut(s)	67, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	5 cut(s)	13, 40, 68, 143, 170
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	33, 124
MaeI	CTAG	1 cut(s)	128
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MluCI	AATT	3 cut(s)	132, 145, 205
MnlI	CCTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	28, 158
MvaI	CCWGG	2 cut(s)	28, 158
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	26
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	26, 156
PspGI	CCWGG	2 cut(s)	26, 156
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	28, 158
SetI	ASST	2 cut(s)	159, 169
SfaNI	GCATC	2 cut(s)	33, 124
SmiMI	CAYNNNNRTG	1 cut(s)	41
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	3 cut(s)	132, 145, 205
SsiI	CCGC	1 cut(s)	7
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	26, 156
TasI	AATT	3 cut(s)	132, 145, 205
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	43
XbaI	TCTAGA	1 cut(s)	127
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.