Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003195

Physical Location & Seq

Genomic Coordinates Reverse (-)

40894475 .. 40899529

Gene Structure 5055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1330800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCCAGGAGACAATAGTGTCGGCAGCCCACCAACCCCAAGGTCCCCAATTGCTCGACTTCGGCATCGTAGACGCTCAGCTGAGGCTGTCCCTGATGTTAGTAAAACAAATGGAGGCAATTTACTGGTTAATGACCGTAATAAATACAGGTCAATGTTGGTACGTGCGTACTCTTCTATTTGGATGATTGGAGGTTTTGCATTGATTATATATCTGGGTCATCTCTGCATCACTGCCATGGTGGTGGTTATCCAAATCTTTATGGCGAAGGAGCTGTTTAATCTACTCAGGAAAGCTCATGAAGATAAACACCTACCGGGATTCAGGAATCTAAATTGGCACTTTTTCTTCACTGCGATGCTGTTTGTTTATGGTCGCATACTCAGTCAACGGCTTGTCAACACTGTCACTTCAGATAAAGTTTTATATCAGATTGTGAGCAGTTTCATCAAGTATCATATGGTTGTCTGTTATTTCTTGTACATCGCAGGATTTATGTGGTTCATTCTTACATTAAAAAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCGTGGACGCACATGATTCTGTTTATTGTGTTTACCCAGTCCTCTTTCTTTGTAGCAAACATCTTTGAAGGAATTTTCTGGTTTCTTCTTCCAGCTTCACTTATAGTAATCAATGACATTGCTGCTTATATCTGTGGTTTCTTCTTTGGAAAAACCCCTTTGATCAAGATATCTCCAAAGAAAACTTGGGAGGGATTCATTGGAGCGTCAATTACAACTATCATATCAGCATTTTTGCTTGCAAATATCATGGGTCGTTTCAAGTGGCTAACTTGTCCAAGAGGGGATTTATCGACTGGTTGGCTTGATTGTGATCCCGGTCCATTGTTTAAGCCAGAGTATTATACCTTTCCAGAATGGCTCCCACAATGGTTTCCTTGGAAAGGGATCTCAATTTTGCCAGTTCAATGGCATGCATTATGTCTCGGTTTGTTTGCATCAATAATCGCTCCCTTTGGAGGCTTCTTTGCAAGTGGCTTTAAAAGGGCTTTTAAAGTCAAGGATTTTGGTGATAGTATCCCTGGACATGGTGGAATCACAGACAGAATGGATTGCCAGATGGTGATGGCTATCTTTGCTTATATCTATCATCAGTCTTTCGTTGTGCCTCAGAGCCTCTCAGTTGATATGATCATAGACCAGATTTTGATGAACCTTACGCTTGAGCAACAGCAAATTCTGTTTGAGAAGCTTAAACAAGTCTTGCACGATAGGCTGGTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0012505 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031984 GO:0032502 GO:0034641 GO:0034654 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0048589 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0080186 GO:0090407 GO:0098827 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

426

Amino Acids

48.81

Weight (kDa)

9.51

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	54 - 384	1.6e-78	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62430 AT4G22340 AT4G22340 AT4G22340 AT4G26770
fragaria_vesca	FvH4_3g01060 FvH4_3g01060 FvH4_3g01060 FvH4_3g01060
malus_domestica	MD05G1357100.v1.1 MD10G1330800.v1.1
prunus_persica	Prupe.4G011700_v2.0.a1 Prupe.4G011700_v2.0.a1
pyrus_communis	pycom05g32310 pycom10g28020
rosa_chinensis	RchiOBHm_Chr5g0001601 RchiOBHm_Chr5g0050181
rosa_laevigata	RLG00000030947
rosa_multiflora	Rmu_sc0006320.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030870 Rroxscaffold_1G00074710
rosa_rugosa	Rorug04G0391300 Rorug05G0259300 Rorug05G0259400 Rorug05G0259500 Rorug05G0259600 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG012800 Rh5AG331000 Rh5BG341700 Rh5CG013800 Rh5CG368200 Rh5DG013600 Rh5DG354500
rosa_wichuraiana	Rw5G001220 Rw5G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	860, 947
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	624, 1227
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	4 cut(s)	162, 170, 482, 530
AfiI	CCNNNNNNNGG	3 cut(s)	935, 1010, 1079
AgsI	TTSAA	3 cut(s)	620, 814, 959
AjnI	CCWGG	2 cut(s)	4, 1072
AluBI	AGCT	5 cut(s)	80, 274, 296, 647, 1243
AluI	AGCT	5 cut(s)	80, 274, 296, 647, 1243
Alw26I	GTCTC	2 cut(s)	3, 980
AlwI	GGATC	2 cut(s)	860, 947
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	24, 674
ApoI	RAATTY	2 cut(s)	624, 1227
AspS9I	GGNCC	2 cut(s)	42, 872
AsuC2I	CCSGG	2 cut(s)	318, 870
AsuHPI	GGTGA	2 cut(s)	1073, 1126
AvaII	GGWCC	2 cut(s)	42, 872
BaeI	ACNNNNGTAYC	2 cut(s)	152, 185
BalI	TGGCCA	1 cut(s)	546
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	36, 661
BccI	CCATC	2 cut(s)	1105, 1111
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	6, 1074
BciVI	GTATCC	1 cut(s)	1079
BclI	TGATCA	2 cut(s)	714, 1182
BcnI	CCSGG	2 cut(s)	318, 870
BcoDI	GTCTC	2 cut(s)	3, 980
BfuI	GTATCC	1 cut(s)	1079
BisI	GCNGC	2 cut(s)	25, 675
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	2 cut(s)	26, 676
Bme1390I	CCNGG	4 cut(s)	6, 318, 870, 1074
Bme18I	GGWCC	2 cut(s)	42, 872
BmgT120I	GGNCC	2 cut(s)	42, 872
BmiI	GGNNCC	2 cut(s)	44, 914
BmrFI	CCNGG	4 cut(s)	6, 318, 870, 1074
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	4 cut(s)	73, 237, 348, 998
BmuI	ACTGGG	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	1235
BpuMI	CCSGG	2 cut(s)	318, 870
BsaAI	YACGTR	1 cut(s)	164
BsaBI	GATNNNNATC	2 cut(s)	864, 1121
BsaJI	CCNNGG	4 cut(s)	38, 237, 929, 1072
Bsc4I	CCNNNNNNNGG	3 cut(s)	935, 1010, 1079
Bse1I	ACTGG	5 cut(s)	129, 547, 589, 853, 953
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	2 cut(s)	864, 1121
BseBI	CCWGG	2 cut(s)	6, 1074
BseDI	CCNNGG	4 cut(s)	38, 237, 929, 1072
BseGI	GGATG	1 cut(s)	189
BseJI	GATNNNNATC	2 cut(s)	864, 1121
BseLI	CCNNNNNNNGG	3 cut(s)	935, 1010, 1079
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	6 cut(s)	72, 90, 301, 397, 1175, 1185
BseNI	ACTGG	5 cut(s)	129, 547, 589, 853, 953
BseXI	GCAGC	2 cut(s)	36, 661
BshFI	GGCC	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	317, 870
BslFI	GGGAC	2 cut(s)	28, 74
BslI	CCNNNNNNNGG	3 cut(s)	935, 1010, 1079
BsmAI	GTCTC	2 cut(s)	3, 980
BsmFI	GGGAC	2 cut(s)	28, 74
BsnI	GGCC	1 cut(s)	546
Bsp1407I	TGTACA	2 cut(s)	480, 528
Bsp143I	GATC	4 cut(s)	714, 865, 939, 1182
Bsp1720I	GCTNAGC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	6 cut(s)	73, 89, 300, 396, 1174, 1184
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	44, 914
BspPI	GGATC	2 cut(s)	860, 947
BsrDI	GCAATG	1 cut(s)	669
BsrGI	TGTACA	2 cut(s)	480, 528
BsrI	ACTGG	5 cut(s)	129, 547, 589, 853, 953
BssECI	CCNNGG	4 cut(s)	38, 237, 929, 1072
BssMI	GATC	4 cut(s)	714, 865, 939, 1182
BssT1I	CCWWGG	3 cut(s)	38, 237, 929
Bst2UI	CCWGG	2 cut(s)	6, 1074
Bst4CI	ACNGT	2 cut(s)	137, 406
Bst6I	CTCTTC	1 cut(s)	178
BstAUI	TGTACA	2 cut(s)	480, 528
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	792, 966
BstDEI	CTNAG	6 cut(s)	76, 81, 287, 383, 1161, 1171
BstDSI	CCRYGG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	4 cut(s)	717, 868, 942, 1185
BstMAI	GTCTC	2 cut(s)	3, 980
BstMBI	GATC	4 cut(s)	714, 865, 939, 1182
BstMWI	GCNNNNNNNGC	2 cut(s)	1127, 1264
BstNI	CCWGG	2 cut(s)	6, 1074
BstNSI	RCATGY	1 cut(s)	968
BstSCI	CCNGG	4 cut(s)	4, 316, 868, 1072
BstV1I	GCAGC	2 cut(s)	36, 661
BstX2I	RGATCY	1 cut(s)	939
BstXI	CCANNNNNNTGG	2 cut(s)	244, 960
BstYI	RGATCY	1 cut(s)	939
BsuI	GTATCC	1 cut(s)	1079
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	2 cut(s)	371, 469
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	231, 351
BtsIMutI	CAGTG	3 cut(s)	231, 351, 402
Cac8I	GCNNGC	2 cut(s)	792, 966
CciI	TCATGA	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	42, 872
CseI	GACGC	3 cut(s)	81, 568, 747
Csp6I	GTAC	4 cut(s)	161, 169, 481, 529
CviAII	CATG	6 cut(s)	238, 299, 565, 802, 965, 1079
CviQI	GTAC	4 cut(s)	161, 169, 481, 529
DdeI	CTNAG	6 cut(s)	76, 81, 287, 383, 1161, 1171
DpnI	GATC	4 cut(s)	716, 867, 941, 1184
DpnII	GATC	4 cut(s)	714, 865, 939, 1182
DraI	TTTAAA	2 cut(s)	1033, 1045
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	3 cut(s)	38, 237, 929
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	42, 872
Eco57I	CTGAAG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	4, 1072
EcoRV	GATATC	1 cut(s)	723
EcoT14I	CCWWGG	3 cut(s)	38, 237, 929
EcoT22I	ATGCAT	1 cut(s)	970
ErhI	CCWWGG	3 cut(s)	38, 237, 929
FaeI	CATG	6 cut(s)	241, 302, 568, 805, 968, 1082
FaqI	GGGAC	2 cut(s)	28, 74
FatI	CATG	6 cut(s)	237, 298, 564, 801, 964, 1078
FauNDI	CATATG	1 cut(s)	459
FbaI	TGATCA	2 cut(s)	714, 1182
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	25, 675
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	25, 675
GluI	GCNGC	2 cut(s)	25, 675
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	2 cut(s)	317, 870
HgaI	GACGC	3 cut(s)	81, 568, 747
Hin1II	CATG	6 cut(s)	241, 302, 568, 805, 968, 1082
HincII	GTYRAC	2 cut(s)	389, 400
HindII	GTYRAC	2 cut(s)	389, 400
HindIII	AAGCTT	1 cut(s)	1241
HinfI	GANTC	5 cut(s)	321, 328, 568, 747, 1086
HpaII	CCGG	2 cut(s)	317, 870
HphI	GGTGA	2 cut(s)	1073, 1126
Hpy166II	GTNNAC	5 cut(s)	71, 389, 400, 558, 585
Hpy188I	TCNGA	4 cut(s)	415, 432, 1164, 1274
Hpy188III	TCNNGA	5 cut(s)	289, 299, 325, 718, 905
Hpy8I	GTNNAC	5 cut(s)	71, 389, 400, 558, 585
HpyAV	CCTTC	2 cut(s)	262, 614
HpyCH4III	ACNGT	2 cut(s)	137, 406
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	7 cut(s)	200, 228, 794, 968, 989, 1022, 1258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1127, 1264
HpyF3I	CTNAG	6 cut(s)	76, 81, 287, 383, 1161, 1171
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	6 cut(s)	241, 302, 568, 805, 968, 1082
Ksp22I	TGATCA	2 cut(s)	714, 1182
Kzo9I	GATC	4 cut(s)	714, 865, 939, 1182
LmnI	GCTCC	4 cut(s)	271, 755, 918, 1006
Lsp1109I	GCAGC	2 cut(s)	36, 661
LweI	GCATC	4 cut(s)	73, 237, 348, 998
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	716, 867, 941, 1184
MboI	GATC	4 cut(s)	714, 865, 939, 1182
MboII	GAAGA	7 cut(s)	165, 314, 340, 535, 629, 632, 685
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	939
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	8 cut(s)	48, 118, 334, 539, 624, 762, 945, 1227
MluNI	TGGCCA	1 cut(s)	546
MmeI	TCCRAC	1 cut(s)	1252
MnlI	CCTC	9 cut(s)	76, 107, 185, 604, 736, 827, 1004, 1170, 1178
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	970
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	7 cut(s)	129, 279, 515, 882, 1032, 1044, 1245
MslI	CAYNNNNRTG	3 cut(s)	236, 242, 356
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	2 cut(s)	317, 870
MspR9I	CCNGG	4 cut(s)	6, 318, 870, 1074
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	2 cut(s)	6, 1074
MwoI	GCNNNNNNNGC	2 cut(s)	1127, 1264
NciI	CCSGG	2 cut(s)	318, 870
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	4 cut(s)	714, 865, 939, 1182
NlaIII	CATG	6 cut(s)	241, 302, 568, 805, 968, 1082
NlaIV	GGNNCC	2 cut(s)	44, 914
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	1 cut(s)	968
PaeI	GCATGC	1 cut(s)	968
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	5 cut(s)	321, 328, 568, 747, 1086
PkrI	GCNGC	2 cut(s)	26, 676
Ppu21I	YACGTR	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	4, 1072
PspGI	CCWGG	2 cut(s)	4, 1072
PspN4I	GGNNCC	2 cut(s)	44, 914
PspPI	GGNCC	2 cut(s)	42, 872
PspPPI	RGGWCCY	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	939
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	4 cut(s)	162, 170, 482, 530
RsaNI	GTAC	4 cut(s)	161, 169, 481, 529
RseI	CAYNNNNRTG	3 cut(s)	236, 242, 356
SaqAI	TTAA	7 cut(s)	129, 279, 515, 882, 1032, 1044, 1245
SatI	GCNGC	2 cut(s)	25, 675
Sau3AI	GATC	4 cut(s)	714, 865, 939, 1182
Sau96I	GGNCC	2 cut(s)	42, 872
ScrFI	CCNGG	4 cut(s)	6, 318, 870, 1074
SfaNI	GCATC	4 cut(s)	73, 237, 348, 998
SinI	GGWCC	2 cut(s)	42, 872
SmiMI	CAYNNNNRTG	3 cut(s)	236, 242, 356
SmlI	CTYRAG	1 cut(s)	1214
SmoI	CTYRAG	1 cut(s)	1214
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	8 cut(s)	48, 118, 334, 539, 624, 762, 945, 1227
StyD4I	CCNGG	4 cut(s)	4, 316, 868, 1072
StyI	CCWWGG	3 cut(s)	38, 237, 929
TaaI	ACNGT	2 cut(s)	137, 406
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	55, 845
TasI	AATT	8 cut(s)	48, 118, 334, 539, 624, 762, 945, 1227
TatI	WGTACW	2 cut(s)	480, 528
TfiI	GAWTC	5 cut(s)	321, 328, 568, 747, 1086
Tru1I	TTAA	7 cut(s)	129, 279, 515, 882, 1032, 1044, 1245
Tru9I	TTAA	7 cut(s)	129, 279, 515, 882, 1032, 1044, 1245
TscAI	CASTG	3 cut(s)	238, 358, 409
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	24, 674
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	315, 436, 493, 739, 1217
TspRI	CASTG	3 cut(s)	238, 358, 409
VpaK11BI	GGWCC	2 cut(s)	42, 872
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	624, 1227
XceI	RCATGY	1 cut(s)	968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	735
XmiI	GTMKAC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.