Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003195

Physical Location & Seq

Genomic Coordinates Forward (+)

972512 .. 977015

Gene Structure 4504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAAAGAGATAATACTGCCGGAAGCCCATCAACCCCAAGGTCCCCACGACTGCGGCACCGTAGACGCTCAGCTGAGCAACTTATCCCAGATGCTAGTAACACAAATGGAGGTCATTTACTTGTTGATGACAATAATAAATACAAGACAATGTGGATTCGGGCATACTCTACTGTTTGGATGATTGGAGGATTTGCATTAATTATATATCTGGGCCATCTGGCTATTACTGCCATGGTGGTTGTTATCCAAATCTTCATGGCAAAGGAGCTCTTTAATCTCTTAAGGAGAGCTCATGAAGATAGGCATCTCCCAGGATTCAGGCTGTTAAATTGGCACTTCTTCTTCACTGCAATGCTGTTTGTTTACGGTCGAATACTCAGTCAACGGCTTGTCAACACCGTAACTTCAGATAAATTTTTACATAAGGTTGTGAGCAGTCTTATCCAGTATCATATGGTCGCCTGCTATTTCTTGTACATCGCAGGTTTTATGTGGTTCATTCTTACATTGAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATCCTAATAATTGTGTTTACACAGTCCTCTTTTACTGTAGCCAACATCTTTGAAGGAATTTTCTGGTTTCTTCTTCCAGCAACACTCATAGTCATCAATGATATCGCTGCTTACATTTGCGGCTTCTTTTTCGGAAGAACCCCTTTGATTAAGATATCTCCAAAGAAAACTTGGGAGGGGTTCATTGGAGCTTCTATTACAACTATGTTTTCAGCCTTTTGGCTTGCACATATCATGGGACAATTTCAATGGCTAACTTGTCCAAGAAAGGATTTATCTACCGGTTGGCTTCACTGTGATCCTGGTCCATTGTTTACACCAGAGTATCATACCTTACCAGGATGGCTCCCAGAATGGTTTCCTTGGAAAGGGATCTCAATTTTGCCAGTTCAATGGCATGCACTGTGCCTTGGTTTGTTTTCATCAATTATAGCACCTTTTGGAGGCTTCTTTGCAAGTGGTTTTAAAAGAGCTTTCAAAGTCAAGGATTTCGGTGACAGTATCCCTGGACACGGTGGAATCACAGACAGAATGGATTGTCAGGTAAAGTTTTCTTTTTTAGAAGTAATTATTACAGGGGAGAGTTTTCCAAGGATATATAGTTATTTGAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0012505 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031984 GO:0032502 GO:0034641 GO:0034654 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0048589 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0080186 GO:0090407 GO:0098827 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

393

Amino Acids

45.23

Weight (kDa)

9.6

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	53 - 370	2.6e-74	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62430 AT4G22340 AT4G22340 AT4G22340 AT4G26770
fragaria_vesca	FvH4_3g01060 FvH4_3g01060 FvH4_3g01060 FvH4_3g01060
malus_domestica	MD05G1357100.v1.1 MD10G1330800.v1.1
prunus_persica	Prupe.4G011700_v2.0.a1 Prupe.4G011700_v2.0.a1
pyrus_communis	pycom05g32310 pycom10g28020
rosa_chinensis	RchiOBHm_Chr5g0001601 RchiOBHm_Chr5g0050181
rosa_laevigata	RLG00000030947
rosa_multiflora	Rmu_sc0006320.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030870 Rroxscaffold_1G00074710
rosa_rugosa	Rorug04G0391300 Rorug05G0259300 Rorug05G0259400 Rorug05G0259500 Rorug05G0259600 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG012800 Rh5AG331000 Rh5BG341700 Rh5CG013800 Rh5CG368200 Rh5DG013600 Rh5DG354500
rosa_wichuraiana	Rw5G001220 Rw5G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	2 cut(s)	55, 684
AclWI	GGATC	3 cut(s)	559, 857, 944
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	2 cut(s)	416, 621
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	479, 527
AfiI	CCNNNNNNNGG	3 cut(s)	932, 1007, 1076
AflII	CTTAAG	1 cut(s)	283
AgeI	ACCGGT	1 cut(s)	845
AgsI	TTSAA	5 cut(s)	514, 617, 812, 956, 1042
AjnI	CCWGG	4 cut(s)	313, 865, 901, 1069
AluBI	AGCT	5 cut(s)	74, 271, 293, 755, 1037
AluI	AGCT	5 cut(s)	74, 271, 293, 755, 1037
Alw21I	GWGCWC	2 cut(s)	273, 295
AlwI	GGATC	3 cut(s)	559, 857, 944
AoxI	GGCC	2 cut(s)	214, 541
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	2 cut(s)	416, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
AseI	ATTAAT	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	845
Asp700I	GAANNNNTTC	1 cut(s)	921
AspS9I	GGNCC	3 cut(s)	42, 214, 869
AsuHPI	GGTGA	1 cut(s)	1070
AvaII	GGWCC	2 cut(s)	42, 869
BaeI	ACNNNNGTAYC	2 cut(s)	872, 905
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	273, 295
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
Bbv12I	GWGCWC	2 cut(s)	273, 295
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	3 cut(s)	37, 225, 900
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	4 cut(s)	315, 867, 903, 1071
BciVI	GTATCC	1 cut(s)	1076
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	600
BfrI	CTTAAG	1 cut(s)	283
BfuAI	ACCTGC	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	1076
BisI	GCNGC	3 cut(s)	56, 672, 685
BlpI	GCTNAGC	2 cut(s)	70, 75
BlsI	GCNGC	3 cut(s)	57, 673, 686
Bme1390I	CCNGG	4 cut(s)	315, 867, 903, 1071
Bme18I	GGWCC	2 cut(s)	42, 869
BmgT120I	GGNCC	3 cut(s)	42, 214, 869
BmiI	GGNNCC	3 cut(s)	44, 59, 911
BmrFI	CCNGG	4 cut(s)	315, 867, 903, 1071
BmsI	GCATC	2 cut(s)	82, 316
Bpu1102I	GCTNAGC	2 cut(s)	70, 75
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	7 cut(s)	38, 234, 313, 926, 973, 1069, 1154
BsaWI	WCCGGW	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	3 cut(s)	932, 1007, 1076
Bse118I	RCCGGY	1 cut(s)	845
Bse1I	ACTGG	3 cut(s)	448, 544, 950
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	4 cut(s)	315, 867, 903, 1071
BseDI	CCNNGG	7 cut(s)	38, 234, 313, 926, 973, 1069, 1154
BseGI	GGATG	2 cut(s)	186, 911
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	932, 1007, 1076
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	3 cut(s)	66, 84, 394
BseNI	ACTGG	3 cut(s)	448, 544, 950
BseXI	GCAGC	1 cut(s)	658
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	216, 543
BshNI	GGYRCC	1 cut(s)	57
BshTI	ACCGGT	1 cut(s)	845
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	2 cut(s)	273, 295
BsiSI	CCGG	2 cut(s)	21, 846
BslFI	GGGAC	2 cut(s)	28, 816
BslI	CCNNNNNNNGG	3 cut(s)	932, 1007, 1076
BsmFI	GGGAC	2 cut(s)	28, 816
BsnI	GGCC	2 cut(s)	216, 543
Bsp1286I	GDGCHC	2 cut(s)	273, 295
Bsp1407I	TGTACA	2 cut(s)	477, 525
Bsp143I	GATC	3 cut(s)	564, 862, 936
Bsp1720I	GCTNAGC	2 cut(s)	70, 75
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	2 cut(s)	55, 684
BspANI	GGCC	2 cut(s)	216, 543
BspCNI	CTCAG	3 cut(s)	67, 83, 393
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	44, 59, 911
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	3 cut(s)	559, 857, 944
BspT107I	GGYRCC	1 cut(s)	57
BspTI	CTTAAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	845
BsrGI	TGTACA	2 cut(s)	477, 525
BsrI	ACTGG	3 cut(s)	448, 544, 950
BssAI	RCCGGY	1 cut(s)	845
BssECI	CCNNGG	7 cut(s)	38, 234, 313, 926, 973, 1069, 1154
BssMI	GATC	3 cut(s)	564, 862, 936
BssT1I	CCWWGG	5 cut(s)	38, 234, 926, 973, 1154
Bst2UI	CCWGG	4 cut(s)	315, 867, 903, 1071
BstAFI	CTTAAG	1 cut(s)	283
BstAUI	TGTACA	2 cut(s)	477, 525
BstC8I	GCNNGC	3 cut(s)	466, 789, 963
BstDEI	CTNAG	3 cut(s)	70, 75, 380
BstDSI	CCRYGG	1 cut(s)	234
BstENI	CCTNNNNNAGG	2 cut(s)	930, 1005
BstF5I	GGATG	2 cut(s)	186, 911
BstKTI	GATC	3 cut(s)	567, 865, 939
BstMBI	GATC	3 cut(s)	564, 862, 936
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	4 cut(s)	315, 867, 903, 1071
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	4 cut(s)	313, 865, 901, 1069
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	658
BstX2I	RGATCY	1 cut(s)	936
BstXI	CCANNNNNNTGG	1 cut(s)	957
BstYI	RGATCY	1 cut(s)	936
BsuI	GTATCC	1 cut(s)	1076
BsuRI	GGCC	2 cut(s)	216, 543
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	186, 911
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	348, 856, 965
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	3 cut(s)	466, 789, 963
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	845
Cfr13I	GGNCC	3 cut(s)	42, 214, 869
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	478, 526
CspAI	ACCGGT	1 cut(s)	845
CviAII	CATG	7 cut(s)	235, 259, 296, 552, 562, 799, 962
CviQI	GTAC	2 cut(s)	478, 526
DdeI	CTNAG	3 cut(s)	70, 75, 380
DpnI	GATC	3 cut(s)	566, 864, 938
DpnII	GATC	3 cut(s)	564, 862, 936
DraI	TTTAAA	1 cut(s)	1030
EaeI	YGGCCR	1 cut(s)	541
Ecl136II	GAGCTC	2 cut(s)	271, 293
Eco130I	CCWWGG	5 cut(s)	38, 234, 926, 973, 1154
Eco24I	GRGCYC	2 cut(s)	273, 295
Eco32I	GATATC	2 cut(s)	667, 720
Eco47I	GGWCC	2 cut(s)	42, 869
Eco53kI	GAGCTC	2 cut(s)	271, 293
Eco57I	CTGAAG	1 cut(s)	393
EcoICRI	GAGCTC	2 cut(s)	271, 293
EcoNI	CCTNNNNNAGG	2 cut(s)	930, 1005
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	4 cut(s)	313, 865, 901, 1069
EcoRV	GATATC	2 cut(s)	667, 720
EcoT14I	CCWWGG	5 cut(s)	38, 234, 926, 973, 1154
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	2 cut(s)	273, 295
ErhI	CCWWGG	5 cut(s)	38, 234, 926, 973, 1154
FaeI	CATG	7 cut(s)	238, 262, 299, 555, 565, 802, 965
FalI	AAGNNNNNCTT	4 cut(s)	257, 289, 691, 723
FaqI	GGGAC	2 cut(s)	28, 816
FatI	CATG	7 cut(s)	234, 258, 295, 551, 561, 798, 961
FauNDI	CATATG	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	56, 672, 685
FokI	GGATG	2 cut(s)	193, 918
FriOI	GRGCYC	2 cut(s)	273, 295
Fsp4HI	GCNGC	3 cut(s)	56, 672, 685
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	3 cut(s)	56, 672, 685
HaeIII	GGCC	2 cut(s)	216, 543
HapII	CCGG	2 cut(s)	21, 846
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	7 cut(s)	238, 262, 299, 555, 565, 802, 965
HincII	GTYRAC	2 cut(s)	386, 397
HindII	GTYRAC	2 cut(s)	386, 397
HinfI	GANTC	3 cut(s)	157, 318, 1083
HpaII	CCGG	2 cut(s)	21, 846
HphI	GGTGA	1 cut(s)	1070
Hpy166II	GTNNAC	6 cut(s)	65, 367, 386, 397, 582, 879
Hpy188I	TCNGA	2 cut(s)	412, 698
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	6 cut(s)	65, 367, 386, 397, 582, 879
HpyAV	CCTTC	1 cut(s)	611
HpyCH4V	TGCA	7 cut(s)	4, 197, 353, 551, 791, 965, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	3 cut(s)	70, 75, 380
Hsp92II	CATG	7 cut(s)	238, 262, 299, 555, 565, 802, 965
Kzo9I	GATC	3 cut(s)	564, 862, 936
LmnI	GCTCC	3 cut(s)	268, 752, 915
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	2 cut(s)	82, 316
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	98, 403, 1058
MalI	GATC	3 cut(s)	566, 864, 938
MboI	GATC	3 cut(s)	564, 862, 936
MflI	RGATCY	1 cut(s)	936
MhlI	GDGCHC	2 cut(s)	273, 295
MlsI	TGGCCA	1 cut(s)	543
MluNI	TGGCCA	1 cut(s)	543
MnlI	CCTC	5 cut(s)	104, 182, 601, 733, 1001
Mox20I	TGGCCA	1 cut(s)	543
Mph1103I	ATGCAT	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	6 cut(s)	200, 276, 284, 329, 714, 1029
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	283
MspI	CCGG	2 cut(s)	21, 846
MspR9I	CCNGG	4 cut(s)	315, 867, 903, 1071
MvaI	CCWGG	4 cut(s)	315, 867, 903, 1071
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	3 cut(s)	564, 862, 936
NlaIII	CATG	7 cut(s)	238, 262, 299, 555, 565, 802, 965
NlaIV	GGNNCC	3 cut(s)	44, 59, 911
NmuCI	GTSAC	1 cut(s)	1058
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	1 cut(s)	965
PaeI	GCATGC	1 cut(s)	965
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	3 cut(s)	157, 318, 1083
PinAI	ACCGGT	1 cut(s)	845
PkrI	GCNGC	3 cut(s)	57, 673, 686
PpuMI	RGGWCCY	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	200
Psp124BI	GAGCTC	2 cut(s)	273, 295
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	4 cut(s)	313, 865, 901, 1069
PspGI	CCWGG	4 cut(s)	313, 865, 901, 1069
PspN4I	GGNNCC	3 cut(s)	44, 59, 911
PspPI	GGNCC	3 cut(s)	42, 214, 869
PspPPI	RGGWCCY	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	936
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	479, 527
RsaNI	GTAC	2 cut(s)	478, 526
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	2 cut(s)	273, 295
SaqAI	TTAA	6 cut(s)	200, 276, 284, 329, 714, 1029
SatI	GCNGC	3 cut(s)	56, 672, 685
Sau3AI	GATC	3 cut(s)	564, 862, 936
Sau96I	GGNCC	3 cut(s)	42, 214, 869
ScrFI	CCNGG	4 cut(s)	315, 867, 903, 1071
SduI	GDGCHC	2 cut(s)	273, 295
SfaNI	GCATC	2 cut(s)	82, 316
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	2 cut(s)	42, 869
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
SphI	GCATGC	1 cut(s)	965
SsiI	CCGC	2 cut(s)	55, 684
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	2 cut(s)	273, 295
StyD4I	CCNGG	4 cut(s)	313, 865, 901, 1069
StyI	CCWWGG	5 cut(s)	38, 234, 926, 973, 1154
TaqI	TCGA	1 cut(s)	373
TatI	WGTACW	2 cut(s)	477, 525
TauI	GCSGC	2 cut(s)	58, 687
TfiI	GAWTC	3 cut(s)	157, 318, 1083
Tru1I	TTAA	6 cut(s)	200, 276, 284, 329, 714, 1029
Tru9I	TTAA	6 cut(s)	200, 276, 284, 329, 714, 1029
TscAI	CASTG	3 cut(s)	355, 863, 972
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	5 cut(s)	247, 312, 490, 736, 975
TspRI	CASTG	3 cut(s)	355, 863, 972
Vha464I	CTTAAG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	42, 869
VspI	ATTAAT	1 cut(s)	200
XagI	CCTNNNNNAGG	2 cut(s)	930, 1005
XapI	RAATTY	2 cut(s)	416, 621
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.