Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003195

Physical Location & Seq

Genomic Coordinates Forward (+)

562967 .. 568378

Gene Structure 5412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCAAAGAGATAATGGTACCGGAAGCCCATCAGCCCCAAGGTCCCCAACTGCTCGACTTCGGCATCGTAGACGCTCAGCTGAGGCTCTCCCGGATGTTGGTAAAACAAATGGAGGCAATTTACTTGTTAATGACCGTAATAAATACAGGTCAATGTTGATTCGTGCATACTCTTCTGTTTGGATGATCGGAGGGTTTGCACTGATTATATATCTGGGCCATCTCTGTATCACTGCCATGGTGGTGGTTATCCAAATCTTTATGGCAAAGGAGCTGTTTAATCTACTCAGGAAAGCTCATGAAGATAGGCACCTCCCAGGATTCAGGCTGTTAAATTGGCACTTTTTCTTCACTGCAATGCTGTTTGTTTACGGTCGCATACTCAGTCAACGGCTTGTCAACACTGTAACTTCAGATAAATTTTTATATCAGCTTGTGAGCAGTCTTATCAAGTATCATATGGTCGTCTGTTATTTCTTGTACATTGCAGGTTTTATGTGGTTCATTCTTACATTGAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACGCACATGATTCTAATTACAGTGTTTACACAGTCATCTTTCTTTGTAGCCAACATTTTTGAAGGAATTTTCTGGTTTCTTCTTCCAGCATCACTTATAGTAATCAATGACATTGCTGCTTATATCTGCGGTTTCTTCTTTGGAAAAACCCCTCTGATCAAGATATCTCCAAAGAAAACTTGGGAGGGATTCATTGGAGCATCTATTACAACTATAATATCAGCATTTTTGCTTGCAAATATCATGGGTCGTTTCCAGTGGCTAACATGTCCGAGAAAGGATTTATCAACTGGTTGGCTTGATTGTGATCCTGGTCCATTGTTTAAGCCAGAATATTATACCTTTCCAGAATGGCTCCAACCATGGTTTCCTTGGAAAGGGATCTCGATTTTGCCAGTTCAATGGCATGCTCTATGTCTTGGGTTGTTTTCATCAATAATAGCACCTTTCGGAGGTTTCTTTGCAAGTGGTTTCAAAAGAGCTTTTAAAGTCAAGGATTTTGGAGACAGTATCCCTGGACATGGTGGAATCACAGACAGAATGGATTGCCAGATGGTAATGGCTATATTTGCTTACATCTATCATCAGTCGTTTATTGTGCCTCAAAGCCTCTCAGTTGAAATGATCATAGACCAGATTTTGATGAACCTCACCGTTGAGCAGCAGCAAGTTCTCTTTGAGAGGCTTAAACAAGTGTTACAGGATAGGCTGGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0012505 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031984 GO:0032502 GO:0034641 GO:0034654 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0048589 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0080186 GO:0090407 GO:0098827 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

426

Amino Acids

48.95

Weight (kDa)

9.59

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62430 AT4G22340 AT4G22340 AT4G22340 AT4G26770
fragaria_vesca	FvH4_3g01060 FvH4_3g01060 FvH4_3g01060 FvH4_3g01060
malus_domestica	MD05G1357100.v1.1 MD10G1330800.v1.1
prunus_persica	Prupe.4G011700_v2.0.a1 Prupe.4G011700_v2.0.a1
pyrus_communis	pycom05g32310 pycom10g28020
rosa_chinensis	RchiOBHm_Chr5g0001601 RchiOBHm_Chr5g0050181
rosa_laevigata	RLG00000030947
rosa_multiflora	Rmu_sc0006320.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030870 Rroxscaffold_1G00074710
rosa_rugosa	Rorug04G0391300 Rorug05G0259300 Rorug05G0259400 Rorug05G0259500 Rorug05G0259600 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG012800 Rh5AG331000 Rh5BG341700 Rh5CG013800 Rh5CG368200 Rh5DG013600 Rh5DG354500
rosa_wichuraiana	Rw5G001220 Rw5G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	17
AccB1I	GGYRCC	2 cut(s)	17, 309
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	687
AclWI	GGATC	2 cut(s)	860, 947
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	419, 624
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	19, 482, 530
AfiI	CCNNNNNNNGG	4 cut(s)	98, 935, 1010, 1079
AflIII	ACRYGT	1 cut(s)	824
AgsI	TTSAA	5 cut(s)	517, 620, 959, 1033, 1178
AjnI	CCWGG	3 cut(s)	316, 868, 1072
AjuI	GAANNNNNNNTTGG	2 cut(s)	909, 941
AluBI	AGCT	5 cut(s)	80, 274, 296, 433, 1040
AluI	AGCT	5 cut(s)	80, 274, 296, 433, 1040
Alw26I	GTCTC	1 cut(s)	1056
AlwI	GGATC	2 cut(s)	860, 947
AoxI	GGCC	2 cut(s)	217, 544
ApeKI	GCWGC	3 cut(s)	674, 1219, 1222
ApoI	RAATTY	2 cut(s)	419, 624
Asp718I	GGTACC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	42, 217, 872
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	1201
AvaII	GGWCC	2 cut(s)	42, 872
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	2 cut(s)	17, 309
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	661, 1231, 1234
BccI	CCATC	3 cut(s)	37, 228, 1105
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	3 cut(s)	318, 870, 1074
BciVI	GTATCC	1 cut(s)	1079
BclI	TGATCA	2 cut(s)	714, 1182
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	1056
BfuAI	ACCTGC	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	1079
BisI	GCNGC	3 cut(s)	675, 1220, 1223
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	676, 1221, 1224
Bme1390I	CCNGG	4 cut(s)	92, 318, 870, 1074
Bme18I	GGWCC	2 cut(s)	42, 872
BmgT120I	GGNCC	3 cut(s)	42, 217, 872
BmiI	GGNNCC	4 cut(s)	19, 44, 311, 914
BmrFI	CCNGG	4 cut(s)	92, 318, 870, 1074
BmsI	GCATC	3 cut(s)	73, 656, 767
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	864
BsaJI	CCNNGG	6 cut(s)	38, 237, 316, 920, 929, 1072
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 935, 1010, 1079
Bse1I	ACTGG	4 cut(s)	547, 814, 853, 953
Bse3DI	GCAATG	3 cut(s)	363, 483, 669
Bse8I	GATNNNNATC	1 cut(s)	864
BseBI	CCWGG	3 cut(s)	318, 870, 1074
BseDI	CCNNGG	6 cut(s)	38, 237, 316, 920, 929, 1072
BseGI	GGATG	2 cut(s)	100, 189
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	4 cut(s)	98, 935, 1010, 1079
BseMI	GCAATG	3 cut(s)	363, 483, 669
BseMII	CTCAG	5 cut(s)	72, 90, 301, 397, 1185
BseNI	ACTGG	4 cut(s)	547, 814, 853, 953
BseXI	GCAGC	3 cut(s)	661, 1231, 1234
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	219, 546
BshNI	GGYRCC	2 cut(s)	17, 309
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	21, 92
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	4 cut(s)	98, 935, 1010, 1079
BsmAI	GTCTC	1 cut(s)	1056
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	219, 546
Bsp1407I	TGTACA	2 cut(s)	480, 528
Bsp143I	GATC	5 cut(s)	186, 714, 865, 939, 1182
Bsp1720I	GCTNAGC	1 cut(s)	76
Bsp19I	CCATGG	2 cut(s)	237, 920
BspACI	CCGC	1 cut(s)	687
BspANI	GGCC	2 cut(s)	219, 546
BspCNI	CTCAG	5 cut(s)	73, 89, 300, 396, 1184
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	19, 44, 311, 914
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	860, 947
BspT107I	GGYRCC	2 cut(s)	17, 309
BsrDI	GCAATG	3 cut(s)	363, 483, 669
BsrGI	TGTACA	2 cut(s)	480, 528
BsrI	ACTGG	4 cut(s)	547, 814, 853, 953
BssECI	CCNNGG	6 cut(s)	38, 237, 316, 920, 929, 1072
BssMI	GATC	5 cut(s)	186, 714, 865, 939, 1182
BssT1I	CCWWGG	4 cut(s)	38, 237, 920, 929
Bst2UI	CCWGG	3 cut(s)	318, 870, 1074
Bst4CI	ACNGT	7 cut(s)	137, 374, 406, 580, 591, 1067, 1213
Bst6I	CTCTTC	1 cut(s)	178
BstAUI	TGTACA	2 cut(s)	480, 528
BstC8I	GCNNGC	2 cut(s)	792, 966
BstDEI	CTNAG	5 cut(s)	76, 81, 287, 383, 1171
BstDSI	CCRYGG	2 cut(s)	237, 920
BstENI	CCTNNNNNAGG	2 cut(s)	933, 1008
BstF5I	GGATG	2 cut(s)	100, 189
BstKTI	GATC	5 cut(s)	189, 717, 868, 942, 1185
BstMAI	GTCTC	1 cut(s)	1056
BstMBI	GATC	5 cut(s)	186, 714, 865, 939, 1182
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	1127
BstNI	CCWGG	3 cut(s)	318, 870, 1074
BstNSI	RCATGY	2 cut(s)	828, 968
BstSCI	CCNGG	4 cut(s)	90, 316, 868, 1072
BstV1I	GCAGC	3 cut(s)	661, 1231, 1234
BstX2I	RGATCY	1 cut(s)	939
BstXI	CCANNNNNNTGG	2 cut(s)	244, 960
BstYI	RGATCY	1 cut(s)	939
BsuI	GTATCC	1 cut(s)	1079
BsuRI	GGCC	2 cut(s)	219, 546
BtgI	CCRYGG	2 cut(s)	237, 920
BtsCI	GGATG	2 cut(s)	100, 189
BtsI	GCAGTG	2 cut(s)	231, 351
BtsIMutI	CAGTG	6 cut(s)	200, 231, 351, 402, 585, 821
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	792, 966
CciI	TCATGA	1 cut(s)	298
Cfr13I	GGNCC	3 cut(s)	42, 217, 872
CseI	GACGC	2 cut(s)	81, 568
Csp6I	GTAC	3 cut(s)	18, 481, 529
CviAII	CATG	9 cut(s)	238, 299, 555, 565, 802, 825, 921, 965, 1079
CviQI	GTAC	3 cut(s)	18, 481, 529
DdeI	CTNAG	5 cut(s)	76, 81, 287, 383, 1171
DpnI	GATC	5 cut(s)	188, 716, 867, 941, 1184
DpnII	GATC	5 cut(s)	186, 714, 865, 939, 1182
DraI	TTTAAA	1 cut(s)	1045
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	4 cut(s)	38, 237, 920, 929
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	42, 872
Eco57I	CTGAAG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	2 cut(s)	933, 1008
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	3 cut(s)	316, 868, 1072
EcoRV	GATATC	1 cut(s)	723
EcoT14I	CCWWGG	4 cut(s)	38, 237, 920, 929
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	4 cut(s)	38, 237, 920, 929
FaeI	CATG	9 cut(s)	241, 302, 558, 568, 805, 828, 924, 968, 1082
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	9 cut(s)	237, 298, 554, 564, 801, 824, 920, 964, 1078
FauNDI	CATATG	1 cut(s)	459
FbaI	TGATCA	2 cut(s)	714, 1182
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	3 cut(s)	675, 1220, 1223
FokI	GGATG	2 cut(s)	107, 196
Fsp4HI	GCNGC	3 cut(s)	675, 1220, 1223
GluI	GCNGC	3 cut(s)	675, 1220, 1223
HaeIII	GGCC	2 cut(s)	219, 546
HapII	CCGG	2 cut(s)	21, 92
HgaI	GACGC	2 cut(s)	81, 568
Hin1II	CATG	9 cut(s)	241, 302, 558, 568, 805, 828, 924, 968, 1082
HincII	GTYRAC	2 cut(s)	389, 400
HindII	GTYRAC	2 cut(s)	389, 400
HinfI	GANTC	5 cut(s)	160, 321, 568, 747, 1086
HpaII	CCGG	2 cut(s)	21, 92
HphI	GGTGA	1 cut(s)	1201
Hpy166II	GTNNAC	5 cut(s)	71, 370, 389, 400, 585
Hpy188I	TCNGA	5 cut(s)	191, 415, 714, 831, 1010
Hpy188III	TCNNGA	5 cut(s)	289, 299, 718, 905, 943
Hpy8I	GTNNAC	5 cut(s)	71, 370, 389, 400, 585
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	7 cut(s)	137, 374, 406, 580, 591, 1067, 1213
HpyCH4V	TGCA	8 cut(s)	4, 167, 200, 356, 488, 554, 794, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1127
HpyF3I	CTNAG	5 cut(s)	76, 81, 287, 383, 1171
Hsp92II	CATG	9 cut(s)	241, 302, 558, 568, 805, 828, 924, 968, 1082
KpnI	GGTACC	1 cut(s)	21
Ksp22I	TGATCA	2 cut(s)	714, 1182
Kzo9I	GATC	5 cut(s)	186, 714, 865, 939, 1182
LmnI	GCTCC	3 cut(s)	271, 755, 918
Lsp1109I	GCAGC	3 cut(s)	661, 1231, 1234
LweI	GCATC	3 cut(s)	73, 656, 767
MaeIII	GTNAC	2 cut(s)	406, 1254
MalI	GATC	5 cut(s)	188, 716, 867, 941, 1184
MboI	GATC	5 cut(s)	186, 714, 865, 939, 1182
MboII	GAAGA	9 cut(s)	165, 314, 340, 529, 532, 535, 629, 632, 685
MflI	RGATCY	1 cut(s)	939
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	6 cut(s)	118, 334, 419, 539, 573, 624
MluNI	TGGCCA	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	940, 1252
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	556
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	6 cut(s)	129, 279, 332, 882, 1044, 1245
MslI	CAYNNNNRTG	3 cut(s)	236, 242, 356
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	2 cut(s)	21, 92
MspR9I	CCNGG	4 cut(s)	92, 318, 870, 1074
MvaI	CCWGG	3 cut(s)	318, 870, 1074
MwoI	GCNNNNNNNGC	1 cut(s)	1127
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	2 cut(s)	237, 920
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	5 cut(s)	186, 714, 865, 939, 1182
NlaIII	CATG	9 cut(s)	241, 302, 558, 568, 805, 828, 924, 968, 1082
NlaIV	GGNNCC	4 cut(s)	19, 44, 311, 914
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	828, 968
PaeI	GCATGC	1 cut(s)	968
PagI	TCATGA	1 cut(s)	298
PciI	ACATGT	1 cut(s)	824
PfeI	GAWTC	5 cut(s)	160, 321, 568, 747, 1086
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	676, 1221, 1224
PpuMI	RGGWCCY	1 cut(s)	42
PscI	ACATGT	1 cut(s)	824
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	3 cut(s)	316, 868, 1072
PspGI	CCWGG	3 cut(s)	316, 868, 1072
PspN4I	GGNNCC	4 cut(s)	19, 44, 311, 914
PspPI	GGNCC	3 cut(s)	42, 217, 872
PspPPI	RGGWCCY	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	939
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	3 cut(s)	19, 482, 530
RsaNI	GTAC	3 cut(s)	18, 481, 529
RseI	CAYNNNNRTG	3 cut(s)	236, 242, 356
SaqAI	TTAA	6 cut(s)	129, 279, 332, 882, 1044, 1245
SatI	GCNGC	3 cut(s)	675, 1220, 1223
Sau3AI	GATC	5 cut(s)	186, 714, 865, 939, 1182
Sau96I	GGNCC	3 cut(s)	42, 217, 872
ScrFI	CCNGG	4 cut(s)	92, 318, 870, 1074
SfaNI	GCATC	3 cut(s)	73, 656, 767
SinI	GGWCC	2 cut(s)	42, 872
SmiMI	CAYNNNNRTG	3 cut(s)	236, 242, 356
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	6 cut(s)	118, 334, 419, 539, 573, 624
SsiI	CCGC	1 cut(s)	687
SspI	AATATT	1 cut(s)	893
StyD4I	CCNGG	4 cut(s)	90, 316, 868, 1072
StyI	CCWWGG	4 cut(s)	38, 237, 920, 929
TaaI	ACNGT	7 cut(s)	137, 374, 406, 580, 591, 1067, 1213
TaqI	TCGA	2 cut(s)	55, 944
TasI	AATT	6 cut(s)	118, 334, 419, 539, 573, 624
TatI	WGTACW	2 cut(s)	480, 528
TfiI	GAWTC	5 cut(s)	160, 321, 568, 747, 1086
Tru1I	TTAA	6 cut(s)	129, 279, 332, 882, 1044, 1245
Tru9I	TTAA	6 cut(s)	129, 279, 332, 882, 1044, 1245
TscAI	CASTG	6 cut(s)	207, 238, 358, 409, 585, 821
TseI	GCWGC	3 cut(s)	674, 1219, 1222
TspDTI	ATGAA	5 cut(s)	315, 493, 739, 978, 1217
TspRI	CASTG	6 cut(s)	207, 238, 358, 409, 585, 821
VpaK11BI	GGWCC	2 cut(s)	42, 872
XagI	CCTNNNNNAGG	2 cut(s)	933, 1008
XapI	RAATTY	2 cut(s)	419, 624
XceI	RCATGY	2 cut(s)	828, 968
XcmI	CCANNNNNNNNNTGG	2 cut(s)	735, 927
XmiI	GTMKAC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.