RchiOBHm_Chr5g0001601

May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
854310 .. 858940
4631 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28302

Sequence Viewer

Length: 1275 bp
ATGCAAAGAGATAATACTGCCGGAAGCCCATCAACCCCAAGGTCCCCACGACTGCGGCACCGTAGACGCTCAGCTGAGCAACTTATCCCAGATGCTAGTAACACAAATGGAGGTCATTTACTTGTTGATGACAATAATAAATACAAGACAATGTGGATTCGGGCATACTCTACTGTTTGGATGATTGGAGGATTTGCATTAATTATATATCTGGGCCATCTGGCTATTACTGCCATGGTGGTTGTTATCCAAATCTTCATGGCAAAGGAGCTCTTTAATCTCTTAAGGAGAGCTCATGAAGATAGGCATCTCCCAGGATTCAGGCTGTTAAATTGGCACTTCTTCTTCACTGCGATGCTGTTTGTTTACGGTCGAATACTCAGTCAACGGCTTGTCAACACCGTAACTTCAGATAAATTTTTACATAAGGTTGTGAGCAGTCTTATCCAGTATCATATGGTCGCCTGCTATTTCTTGTACATTGCAGGTTTTATGTGGTTCATTCTTACATTGAAGAAGAAGATGTACAAGTATCAATTTGGCCAGTATGCATGGACACACATGATCCTAATAATTGTGTTTACACAGTCCTCTTTTACTGTAGCCAACATCTTTGAAGGAATTTTCTGGTTTCTTCTTCCAGCAACACTCATAGTCATCAATGATATTGCTGCTTACATTTGCGGCTTCTTTTTCGGAAGAACCCCTTTGATTAAGATATCTCCAAAGAAAACTTGGGAGGGGTTCATTGGAGCTTCTATTACAACTATGTTTTCAGCCTTTTGGCTTGCACATATCATGGGACAATTTCAATGGCTAACTTGTCCAAGAAAGGATTTATCTACCGGTTGGCTTCACTGTGATCCTGGTCCATTGTTTACACCAGAGTATCATACCTTACCAGGATGGCTCCCAGAATGGTTTCCTTGGAAAGGGATCTCAATTTTGCCAGTTCAATGGCATGCACTATGTCTTGGTTTGTTTTCATCAATTATAGCACCTTTTGGAGGCTTCTTTGCAAGTGGTTTTAAAAGAGCCTTCAAAGTCAAGGATTTTGGTGACAGTATCCCTGGACACGGTGGAATCACAGACAGAATGGATTGTCAGATGGTAATGGCTGTTTTTGCTTACATCTATCATCAGTCATTTGTTATGCCTCAACACCTCTCGGTTGAAATTTTATTGGACCAGATTTTGACAAACCTTACTGTCGAGCAGCAGCAAGCTCTATATGAGAAGCTTAAACAAGTCTTGCAGGACAGGCTACTCGGATGA

Protein Analysis

424

Amino Acids

48.93

Weight (kDa)

9.45

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_1 PF01148 53 - 383 3e-78 Cytidylyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 64
AciI CCGC 2 cut(s) 55, 684
AclWI GGATC 3 cut(s) 559, 857, 944
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 3 cut(s) 416, 621, 1176
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 479, 527
AfiI CCNNNNNNNGG 3 cut(s) 932, 1007, 1076
AflII CTTAAG 1 cut(s) 283
AgeI ACCGGT 1 cut(s) 845
AgsI TTSAA 6 cut(s) 514, 617, 812, 956, 1042, 1175
AjnI CCWGG 4 cut(s) 313, 865, 901, 1069
AluBI AGCT 6 cut(s) 74, 271, 293, 755, 1226, 1240
AluI AGCT 6 cut(s) 74, 271, 293, 755, 1226, 1240
Alw21I GWGCWC 2 cut(s) 273, 295
AlwI GGATC 3 cut(s) 559, 857, 944
AoxI GGCC 2 cut(s) 214, 541
ApeKI GCWGC 3 cut(s) 671, 1216, 1219
ApoI RAATTY 3 cut(s) 416, 621, 1176
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AseI ATTAAT 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 845
Asp700I GAANNNNTTC 1 cut(s) 921
AspS9I GGNCC 4 cut(s) 42, 214, 869, 1186
AsuHPI GGTGA 1 cut(s) 1070
AvaII GGWCC 3 cut(s) 42, 869, 1186
BaeI ACNNNNGTAYC 2 cut(s) 872, 905
BalI TGGCCA 1 cut(s) 543
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 2 cut(s) 273, 295
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
Bbv12I GWGCWC 2 cut(s) 273, 295
BbvI GCAGC 3 cut(s) 658, 1228, 1231
BccI CCATC 4 cut(s) 37, 225, 900, 1102
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 4 cut(s) 315, 867, 903, 1071
BciVI GTATCC 1 cut(s) 1076
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 600
BfrI CTTAAG 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 476
BfuI GTATCC 1 cut(s) 1076
BisI GCNGC 5 cut(s) 56, 672, 685, 1217, 1220
BlpI GCTNAGC 2 cut(s) 70, 75
BlsI GCNGC 5 cut(s) 57, 673, 686, 1218, 1221
Bme1390I CCNGG 4 cut(s) 315, 867, 903, 1071
Bme18I GGWCC 3 cut(s) 42, 869, 1186
BmgT120I GGNCC 4 cut(s) 42, 214, 869, 1186
BmiI GGNNCC 3 cut(s) 44, 59, 911
BmrFI CCNGG 4 cut(s) 315, 867, 903, 1071
BmsI GCATC 3 cut(s) 82, 316, 345
Bpu1102I GCTNAGC 2 cut(s) 70, 75
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 5 cut(s) 38, 234, 313, 926, 1069
BsaWI WCCGGW 1 cut(s) 845
Bsc4I CCNNNNNNNGG 3 cut(s) 932, 1007, 1076
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 3 cut(s) 448, 544, 950
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 4 cut(s) 315, 867, 903, 1071
BseDI CCNNGG 5 cut(s) 38, 234, 313, 926, 1069
BseGI GGATG 2 cut(s) 186, 911
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 932, 1007, 1076
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 66, 84, 394
BseNI ACTGG 3 cut(s) 448, 544, 950
BseXI GCAGC 3 cut(s) 658, 1228, 1231
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 2 cut(s) 216, 543
BshNI GGYRCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 2 cut(s) 273, 295
BsiSI CCGG 2 cut(s) 21, 846
BslFI GGGAC 2 cut(s) 28, 816
BslI CCNNNNNNNGG 3 cut(s) 932, 1007, 1076
BsmFI GGGAC 2 cut(s) 28, 816
BsnI GGCC 2 cut(s) 216, 543
Bsp1286I GDGCHC 2 cut(s) 273, 295
Bsp1407I TGTACA 2 cut(s) 477, 525
Bsp143I GATC 3 cut(s) 564, 862, 936
Bsp1720I GCTNAGC 2 cut(s) 70, 75
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 2 cut(s) 55, 684
BspANI GGCC 2 cut(s) 216, 543
BspCNI CTCAG 3 cut(s) 67, 83, 393
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 44, 59, 911
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 3 cut(s) 559, 857, 944
BspT107I GGYRCC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 845
BsrGI TGTACA 2 cut(s) 477, 525
BsrI ACTGG 3 cut(s) 448, 544, 950
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 5 cut(s) 38, 234, 313, 926, 1069
BssMI GATC 3 cut(s) 564, 862, 936
BssT1I CCWWGG 3 cut(s) 38, 234, 926
Bst2UI CCWGG 4 cut(s) 315, 867, 903, 1071
BstAFI CTTAAG 1 cut(s) 283
BstAUI TGTACA 2 cut(s) 477, 525
BstC8I GCNNGC 4 cut(s) 466, 789, 963, 1224
BstDEI CTNAG 3 cut(s) 70, 75, 380
BstDSI CCRYGG 1 cut(s) 234
BstENI CCTNNNNNAGG 2 cut(s) 930, 1005
BstF5I GGATG 2 cut(s) 186, 911
BstKTI GATC 3 cut(s) 567, 865, 939
BstMBI GATC 3 cut(s) 564, 862, 936
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 230, 1124, 1261
BstNI CCWGG 4 cut(s) 315, 867, 903, 1071
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 4 cut(s) 313, 865, 901, 1069
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 3 cut(s) 658, 1228, 1231
BstX2I RGATCY 1 cut(s) 936
BstXI CCANNNNNNTGG 1 cut(s) 957
BstYI RGATCY 1 cut(s) 936
BsuI GTATCC 1 cut(s) 1076
BsuRI GGCC 2 cut(s) 216, 543
BtgI CCRYGG 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 2 cut(s) 186, 911
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 348, 856
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 4 cut(s) 466, 789, 963, 1224
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 4 cut(s) 42, 214, 869, 1186
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 478, 526
CspAI ACCGGT 1 cut(s) 845
CviAII CATG 7 cut(s) 235, 259, 296, 552, 562, 799, 962
CviQI GTAC 2 cut(s) 478, 526
DdeI CTNAG 3 cut(s) 70, 75, 380
DpnI GATC 3 cut(s) 566, 864, 938
DpnII GATC 3 cut(s) 564, 862, 936
DraI TTTAAA 1 cut(s) 1030
EaeI YGGCCR 1 cut(s) 541
Ecl136II GAGCTC 2 cut(s) 271, 293
Eco130I CCWWGG 3 cut(s) 38, 234, 926
Eco24I GRGCYC 2 cut(s) 273, 295
Eco32I GATATC 1 cut(s) 720
Eco47I GGWCC 3 cut(s) 42, 869, 1186
Eco53kI GAGCTC 2 cut(s) 271, 293
Eco57I CTGAAG 1 cut(s) 393
EcoICRI GAGCTC 2 cut(s) 271, 293
EcoNI CCTNNNNNAGG 2 cut(s) 930, 1005
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 4 cut(s) 313, 865, 901, 1069
EcoRV GATATC 1 cut(s) 720
EcoT14I CCWWGG 3 cut(s) 38, 234, 926
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 273, 295
ErhI CCWWGG 3 cut(s) 38, 234, 926
FaeI CATG 7 cut(s) 238, 262, 299, 555, 565, 802, 965
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 691, 723
FaqI GGGAC 2 cut(s) 28, 816
FatI CATG 7 cut(s) 234, 258, 295, 551, 561, 798, 961
FauNDI CATATG 1 cut(s) 456
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 5 cut(s) 56, 672, 685, 1217, 1220
FokI GGATG 2 cut(s) 193, 918
FriOI GRGCYC 2 cut(s) 273, 295
Fsp4HI GCNGC 5 cut(s) 56, 672, 685, 1217, 1220
FspBI CTAG 1 cut(s) 96
GluI GCNGC 5 cut(s) 56, 672, 685, 1217, 1220
HaeIII GGCC 2 cut(s) 216, 543
HapII CCGG 2 cut(s) 21, 846
HgaI GACGC 1 cut(s) 75
Hin1II CATG 7 cut(s) 238, 262, 299, 555, 565, 802, 965
HincII GTYRAC 2 cut(s) 386, 397
HindII GTYRAC 2 cut(s) 386, 397
HindIII AAGCTT 1 cut(s) 1238
HinfI GANTC 3 cut(s) 157, 318, 1083
HpaII CCGG 2 cut(s) 21, 846
HphI GGTGA 1 cut(s) 1070
Hpy166II GTNNAC 6 cut(s) 65, 367, 386, 397, 582, 879
Hpy188I TCNGA 4 cut(s) 412, 698, 1107, 1271
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 6 cut(s) 65, 367, 386, 397, 582, 879
HpyAV CCTTC 2 cut(s) 611, 1048
HpyCH4V TGCA 8 cut(s) 4, 197, 485, 551, 791, 965, 1019, 1255
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 1124, 1261
HpyF3I CTNAG 3 cut(s) 70, 75, 380
Hsp92II CATG 7 cut(s) 238, 262, 299, 555, 565, 802, 965
Kzo9I GATC 3 cut(s) 564, 862, 936
LmnI GCTCC 3 cut(s) 268, 752, 915
Lsp1109I GCAGC 3 cut(s) 658, 1228, 1231
LweI GCATC 3 cut(s) 82, 316, 345
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 3 cut(s) 98, 403, 1058
MalI GATC 3 cut(s) 566, 864, 938
MboI GATC 3 cut(s) 564, 862, 936
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 2 cut(s) 273, 295
MlsI TGGCCA 1 cut(s) 543
MluNI TGGCCA 1 cut(s) 543
MnlI CCTC 7 cut(s) 104, 182, 601, 733, 1001, 1167, 1175
Mox20I TGGCCA 1 cut(s) 543
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 1 cut(s) 543
MseI TTAA 7 cut(s) 200, 276, 284, 329, 714, 1029, 1242
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 283
MspI CCGG 2 cut(s) 21, 846
MspR9I CCNGG 4 cut(s) 315, 867, 903, 1071
MvaI CCWGG 4 cut(s) 315, 867, 903, 1071
MwoI GCNNNNNNNGC 3 cut(s) 230, 1124, 1261
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 456
NdeII GATC 3 cut(s) 564, 862, 936
NlaIII CATG 7 cut(s) 238, 262, 299, 555, 565, 802, 965
NlaIV GGNNCC 3 cut(s) 44, 59, 911
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 1 cut(s) 965
PaeI GCATGC 1 cut(s) 965
PagI TCATGA 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 157, 318, 1083
PinAI ACCGGT 1 cut(s) 845
PkrI GCNGC 5 cut(s) 57, 673, 686, 1218, 1221
PpuMI RGGWCCY 1 cut(s) 42
PshBI ATTAAT 1 cut(s) 200
Psp124BI GAGCTC 2 cut(s) 273, 295
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 313, 865, 901, 1069
PspGI CCWGG 4 cut(s) 313, 865, 901, 1069
PspN4I GGNNCC 3 cut(s) 44, 59, 911
PspPI GGNCC 4 cut(s) 42, 214, 869, 1186
PspPPI RGGWCCY 1 cut(s) 42
PsuI RGATCY 1 cut(s) 936
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 479, 527
RsaNI GTAC 2 cut(s) 478, 526
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 2 cut(s) 273, 295
SaqAI TTAA 7 cut(s) 200, 276, 284, 329, 714, 1029, 1242
SatI GCNGC 5 cut(s) 56, 672, 685, 1217, 1220
Sau3AI GATC 3 cut(s) 564, 862, 936
Sau96I GGNCC 4 cut(s) 42, 214, 869, 1186
ScrFI CCNGG 4 cut(s) 315, 867, 903, 1071
SduI GDGCHC 2 cut(s) 273, 295
SfaNI GCATC 3 cut(s) 82, 316, 345
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 3 cut(s) 42, 869, 1186
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SphI GCATGC 1 cut(s) 965
SsiI CCGC 2 cut(s) 55, 684
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 2 cut(s) 273, 295
StyD4I CCNGG 4 cut(s) 313, 865, 901, 1069
StyI CCWWGG 3 cut(s) 38, 234, 926
TaqI TCGA 2 cut(s) 373, 1212
TatI WGTACW 2 cut(s) 477, 525
TauI GCSGC 2 cut(s) 58, 687
TfiI GAWTC 3 cut(s) 157, 318, 1083
Tru1I TTAA 7 cut(s) 200, 276, 284, 329, 714, 1029, 1242
Tru9I TTAA 7 cut(s) 200, 276, 284, 329, 714, 1029, 1242
TscAI CASTG 2 cut(s) 355, 863
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 3 cut(s) 671, 1216, 1219
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 5 cut(s) 247, 312, 490, 736, 975
TspRI CASTG 2 cut(s) 355, 863
Vha464I CTTAAG 1 cut(s) 283
VpaK11BI GGWCC 3 cut(s) 42, 869, 1186
VspI ATTAAT 1 cut(s) 200
XagI CCTNNNNNAGG 2 cut(s) 930, 1005
XapI RAATTY 3 cut(s) 416, 621, 1176
XceI RCATGY 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.