Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003195

Physical Location & Seq

Genomic Coordinates Reverse (-)

11799852 .. 11803522

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCAGAAGGAAATTGCTGGTGATGCTCCATCAGCACCAACCACTCGTGTTCGGCATCGGAAGCGAAACAGCGATGTTGGTGCAGGGGCAGGCAAACCAAATGGAAACCATTTACTTGTCAATGACAGCAAAAAATACAAATCGTTTCTCATTCGAGCATACTCCACTTTCTGGATGATAGGTGGTTTTGCTCTTATAGTTTACCTGGGTCATCTCTACATTACAGCCATGGTGGTTGTTATTCAGATATTCATGGCACGAGAACTTTTTAATTTGCTGAGAAAAACTCATGAAGATAAACAGCTCCCTGGTTTTAGATTACTGAATTGGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCTAGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTCACAAGCCTCATCAAATACCACATGGCAATCTGTTACTCCTTGTATATTTCTGGCTTTGTTTGGTTTATTCTCACGCTGAAAAAGAAGATGTACAAATATCAGTTTAGCCAATATGCATGGACACATATGATATTAATTGTGGTGTTTACTCAGTCCTCATTCACTGTCGCCAACATCTTTGAAGGAATCTTCTGGTTTCTTCTTCCTGCATCACTTATCGTCATCAATGACATATTTGCATATATCTGTGGTTTCTTCTTTGGAAGAACACCGTTGATCAAGTTATCACCAAAGAAAACATGGGAGGGTTTCATTGGAGCTTCTATTACCACAGTGATTTCTGCATTCCTGCTTGCAAATATAATGGGTCGTTTCCTGTGGCTGACATGTCCCAGAGAGGATCTATCGACAGGCTGGCTCCTCTGTGACCCTGGTCCACTGTTCAAGCAAGAGACACATGCTTTACCAGGATGGATTTCTGATTGGCTCCCTTGGAAGGAAATTTCGATTCTACCAGTCCAGTGGCATGCTCTATGTCTTGGATTGTTCGCCTCTATAATAGCTCCTTTTGGTGGCTTCTTTGCCAGTGGTTTCAAAAGAGCATTCAAAATCAAGGACTTTGGTGATAGTATTCCCGGACATGGCGGAATTACAGATAGAATGGATTGTCAGATGGTGATGGCTGTTTTTGCCTATATATATCATCAATCGTTTGTTGTACCTGAAGTCCTCTCTGTGGATAAGCTCTTAGACCAGATAATCACAAGCCTGACATTGGAAGAACAACAAGCGCTACTCGTGAAGCTTGGCCAAATGTTGCAGGAAAAGGTTATTGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004605 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006220 GO:0006221 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0012505 GO:0016020 GO:0016024 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0031984 GO:0032502 GO:0034641 GO:0034654 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046341 GO:0046471 GO:0046474 GO:0046483 GO:0046486 GO:0048589 GO:0055086 GO:0070567 GO:0071704 GO:0072527 GO:0072528 GO:0080186 GO:0090407 GO:0098827 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 ko04070 map00564 map01100 map01110 map04070

Pfam Domains

Protein Families

CTP_transf_1

Protein Analysis

423

Amino Acids

48.25

Weight (kDa)

9.44

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_1	PF01148	75 - 405	1.7e-78	Cytidylyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62430 AT4G22340 AT4G22340 AT4G22340 AT4G26770
fragaria_vesca	FvH4_3g01060 FvH4_3g01060 FvH4_3g01060 FvH4_3g01060
malus_domestica	MD05G1357100.v1.1 MD10G1330800.v1.1
prunus_persica	Prupe.4G011700_v2.0.a1 Prupe.4G011700_v2.0.a1
pyrus_communis	pycom05g32310 pycom10g28020
rosa_chinensis	RchiOBHm_Chr5g0001601 RchiOBHm_Chr5g0050181
rosa_laevigata	RLG00000030947
rosa_multiflora	Rmu_sc0006320.1_g000005
rosa_roxburghii	Rroxscaffold_1G00030870 Rroxscaffold_1G00074710
rosa_rugosa	Rorug04G0391300 Rorug05G0259300 Rorug05G0259400 Rorug05G0259500 Rorug05G0259600 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG012800 Rh5AG331000 Rh5BG341700 Rh5CG013800 Rh5CG368200 Rh5DG013600 Rh5DG354500
rosa_wichuraiana	Rw5G001220 Rw5G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	1 cut(s)	1074
AclWI	GGATC	1 cut(s)	837
AcoI	YGGCCR	1 cut(s)	1237
AcsI	RAATTY	1 cut(s)	930
AcuI	CTGAAG	1 cut(s)	1173
AfaI	GTAC	2 cut(s)	521, 1149
AfeI	AGCGCT	1 cut(s)	1221
AfiI	CCNNNNNNNGG	6 cut(s)	171, 925, 1001, 1070, 1165, 1204
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	611, 874, 1024, 1036
AjnI	CCWGG	4 cut(s)	204, 307, 859, 895
AjuI	GAANNNNNNNTTGG	1 cut(s)	1245
AluBI	AGCT	5 cut(s)	304, 749, 992, 1174, 1234
AluI	AGCT	5 cut(s)	304, 749, 992, 1174, 1234
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	1 cut(s)	837
Aor51HI	AGCGCT	1 cut(s)	1221
AoxI	GGCC	1 cut(s)	1237
ApoI	RAATTY	1 cut(s)	930
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AseI	ATTAAT	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	1222
AspS9I	GGNCC	1 cut(s)	863
AsuC2I	CCSGG	1 cut(s)	1065
AsuHPI	GGTGA	4 cut(s)	32, 708, 1064, 1117
AvaII	GGWCC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	1239
BauI	CACGAG	3 cut(s)	45, 258, 1226
BccI	CCATC	4 cut(s)	37, 894, 1096, 1102
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	4 cut(s)	206, 309, 861, 897
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	1065
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	1223
Bme1390I	CCNGG	5 cut(s)	206, 309, 861, 897, 1065
Bme18I	GGWCC	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	848, 917
BmrFI	CCNGG	5 cut(s)	206, 309, 861, 897, 1065
BmsI	GCATC	3 cut(s)	13, 64, 647
BoxI	GACNNNNGTC	1 cut(s)	861
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	1065
BsaJI	CCNNGG	5 cut(s)	205, 228, 307, 859, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 925, 1001, 1070, 1165, 1204
Bse1I	ACTGG	4 cut(s)	429, 944, 949, 1014
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	4 cut(s)	206, 309, 861, 897
BseDI	CCNNGG	5 cut(s)	205, 228, 307, 859, 920
BseGI	GGATG	2 cut(s)	180, 905
BseLI	CCNNNNNNNGG	6 cut(s)	171, 925, 1001, 1070, 1165, 1204
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	269, 593
BseNI	ACTGG	4 cut(s)	429, 944, 949, 1014
BseRI	GAGGAG	1 cut(s)	839
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	1239
BsiSI	CCGG	1 cut(s)	1065
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	6 cut(s)	171, 925, 1001, 1070, 1165, 1204
BsmAI	GTCTC	1 cut(s)	875
BsmFI	GGGAC	1 cut(s)	804
BsmI	GAATGC	2 cut(s)	773, 1031
BsnI	GGCC	1 cut(s)	1239
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	705, 829, 1265
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	1074
BspANI	GGCC	1 cut(s)	1239
BspCNI	CTCAG	2 cut(s)	270, 592
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	848, 917
BspPI	GGATC	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	4 cut(s)	429, 944, 949, 1014
BssECI	CCNNGG	5 cut(s)	205, 228, 307, 859, 920
BssMI	GATC	3 cut(s)	705, 829, 1265
BssSI	CACGAG	3 cut(s)	45, 258, 1226
BssT1I	CCWWGG	2 cut(s)	228, 920
Bst2BI	CACGAG	3 cut(s)	45, 258, 1226
Bst2UI	CCWGG	4 cut(s)	206, 309, 861, 897
Bst4CI	ACNGT	5 cut(s)	397, 595, 702, 763, 870
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	4 cut(s)	91, 783, 845, 957
BstDEI	CTNAG	5 cut(s)	278, 374, 579, 1177, 1269
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	180, 905
BstH2I	RGCGCY	1 cut(s)	1223
BstHHI	GCGC	1 cut(s)	1222
BstKTI	GATC	3 cut(s)	708, 832, 1268
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	3 cut(s)	705, 829, 1265
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 61, 1118
BstNI	CCWGG	4 cut(s)	206, 309, 861, 897
BstNSI	RCATGY	3 cut(s)	819, 890, 959
BstPAI	GACNNNNGTC	1 cut(s)	861
BstSCI	CCNGG	5 cut(s)	204, 307, 859, 895, 1063
BstX2I	RGATCY	2 cut(s)	829, 1265
BstXI	CCANNNNNNTGG	1 cut(s)	951
BstYI	RGATCY	2 cut(s)	829, 1265
BsuRI	GGCC	1 cut(s)	1239
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	180, 905
BtsIMutI	CAGTG	6 cut(s)	393, 591, 768, 866, 956, 1021
Cac8I	GCNNGC	4 cut(s)	91, 783, 845, 957
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	1222
Cfr13I	GGNCC	1 cut(s)	863
Csp6I	GTAC	2 cut(s)	520, 1148
CviQI	GTAC	2 cut(s)	520, 1148
DdeI	CTNAG	5 cut(s)	278, 374, 579, 1177, 1269
DpnI	GATC	3 cut(s)	707, 831, 1267
DpnII	GATC	3 cut(s)	705, 829, 1265
EaeI	YGGCCR	1 cut(s)	1237
EciI	GGCGGA	1 cut(s)	1089
Eco130I	CCWWGG	2 cut(s)	228, 920
Eco47I	GGWCC	1 cut(s)	863
Eco47III	AGCGCT	1 cut(s)	1221
Eco57I	CTGAAG	1 cut(s)	1173
EcoRII	CCWGG	4 cut(s)	204, 307, 859, 895
EcoT14I	CCWWGG	2 cut(s)	228, 920
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	2 cut(s)	228, 920
FaqI	GGGAC	1 cut(s)	804
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	705
FokI	GGATG	2 cut(s)	187, 912
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	1221
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	1223
HaeIII	GGCC	1 cut(s)	1239
HapII	CCGG	1 cut(s)	1065
HhaI	GCGC	1 cut(s)	1222
Hin6I	GCGC	1 cut(s)	1220
HinP1I	GCGC	1 cut(s)	1220
HincII	GTYRAC	2 cut(s)	380, 391
HindII	GTYRAC	2 cut(s)	380, 391
HindIII	AAGCTT	1 cut(s)	1232
HinfI	GANTC	3 cut(s)	400, 615, 937
HpaII	CCGG	1 cut(s)	1065
HphI	GGTGA	4 cut(s)	32, 708, 1064, 1117
Hpy166II	GTNNAC	5 cut(s)	202, 380, 391, 576, 866
Hpy188I	TCNGA	4 cut(s)	60, 246, 910, 1101
Hpy188III	TCNNGA	4 cut(s)	172, 290, 404, 1228
Hpy8I	GTNNAC	5 cut(s)	202, 380, 391, 576, 866
HpyAV	CCTTC	2 cut(s)	605, 919
HpyCH4III	ACNGT	5 cut(s)	397, 595, 702, 763, 870
HpyCH4V	TGCA	8 cut(s)	4, 83, 545, 638, 668, 773, 785, 1249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 61, 1118
HpyF3I	CTNAG	5 cut(s)	278, 374, 579, 1177, 1269
HspAI	GCGC	1 cut(s)	1220
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	705, 829, 1265
LmnI	GCTCC	6 cut(s)	31, 309, 746, 852, 921, 997
LweI	GCATC	3 cut(s)	13, 64, 647
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	4 cut(s)	397, 427, 461, 854
MalI	GATC	3 cut(s)	707, 831, 1267
MboI	GATC	3 cut(s)	705, 829, 1265
MboII	GAAGA	8 cut(s)	305, 526, 610, 620, 623, 676, 705, 1220
MflI	RGATCY	2 cut(s)	829, 1265
MlsI	TGGCCA	1 cut(s)	1239
MluCI	AATT	6 cut(s)	12, 271, 325, 564, 930, 1077
MluNI	TGGCCA	1 cut(s)	1239
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	7 cut(s)	446, 595, 727, 820, 860, 991, 1169
Mox20I	TGGCCA	1 cut(s)	1239
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	1239
MseI	TTAA	2 cut(s)	270, 563
Msp20I	TGGCCA	1 cut(s)	1239
MspI	CCGG	1 cut(s)	1065
MspR9I	CCNGG	5 cut(s)	206, 309, 861, 897, 1065
Mva1269I	GAATGC	2 cut(s)	773, 1031
MvaI	CCWGG	4 cut(s)	206, 309, 861, 897
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 61, 1118
NciI	CCSGG	1 cut(s)	1065
NcoI	CCATGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	3 cut(s)	705, 829, 1265
NlaIV	GGNNCC	2 cut(s)	848, 917
NmuCI	GTSAC	3 cut(s)	397, 427, 854
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	3 cut(s)	819, 890, 959
PaeI	GCATGC	1 cut(s)	959
PagI	TCATGA	1 cut(s)	289
PciI	ACATGT	1 cut(s)	815
PctI	GAATGC	2 cut(s)	773, 1031
PfeI	GAWTC	2 cut(s)	615, 937
PflFI	GACNNNGTC	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	1063
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	815
PshAI	GACNNNNGTC	1 cut(s)	861
PshBI	ATTAAT	1 cut(s)	563
Psp6I	CCWGG	4 cut(s)	204, 307, 859, 895
PspGI	CCWGG	4 cut(s)	204, 307, 859, 895
PspN4I	GGNNCC	2 cut(s)	848, 917
PspPI	GGNCC	1 cut(s)	863
PsuI	RGATCY	2 cut(s)	829, 1265
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	2 cut(s)	521, 1149
RsaNI	GTAC	2 cut(s)	520, 1148
SaqAI	TTAA	2 cut(s)	270, 563
Sau3AI	GATC	3 cut(s)	705, 829, 1265
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	5 cut(s)	206, 309, 861, 897, 1065
SetI	ASST	9 cut(s)	184, 207, 306, 751, 994, 1153, 1176, 1236, 1260
SfaNI	GCATC	3 cut(s)	13, 64, 647
SinI	GGWCC	1 cut(s)	863
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	6 cut(s)	12, 271, 325, 564, 930, 1077
SsiI	CCGC	1 cut(s)	1074
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	5 cut(s)	204, 307, 859, 895, 1063
StyI	CCWWGG	2 cut(s)	228, 920
TaaI	ACNGT	5 cut(s)	397, 595, 702, 763, 870
TaqI	TCGA	5 cut(s)	154, 367, 421, 836, 935
TasI	AATT	6 cut(s)	12, 271, 325, 564, 930, 1077
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	615, 937
Tru1I	TTAA	2 cut(s)	270, 563
Tru9I	TTAA	2 cut(s)	270, 563
TscAI	CASTG	6 cut(s)	400, 598, 768, 873, 956, 1021
TseFI	GTSAC	3 cut(s)	397, 427, 854
Tsp45I	GTSAC	3 cut(s)	397, 427, 854
TspDTI	ATGAA	3 cut(s)	241, 306, 730
TspRI	CASTG	6 cut(s)	400, 598, 768, 873, 956, 1021
Tth111I	GACNNNGTC	1 cut(s)	410
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	863
VspI	ATTAAT	1 cut(s)	563
XapI	RAATTY	1 cut(s)	930
XceI	RCATGY	3 cut(s)	819, 890, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	726
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.