Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

23471844 .. 23473922

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGGCTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAACCCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGGCAAGAACTTGTGAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGGTACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAAGTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGCCAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCCGAAGCCTGGGGACGTCATATCCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

227

Amino Acids

24.11

Weight (kDa)

5.72

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	7 - 204	2e-70	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccII	CGCG	1 cut(s)	65
AciI	CCGC	5 cut(s)	63, 65, 76, 537, 649
AclWI	GGATC	1 cut(s)	246
AcyI	GRCGYC	3 cut(s)	93, 260, 633
AfaI	GTAC	2 cut(s)	403, 509
AfiI	CCNNNNNNNGG	6 cut(s)	211, 283, 449, 626, 648, 649
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	4 cut(s)	343, 361, 442, 625
AluBI	AGCT	4 cut(s)	254, 569, 575, 617
AluI	AGCT	4 cut(s)	254, 569, 575, 617
Alw21I	GWGCWC	2 cut(s)	157, 619
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	4 cut(s)	288, 341, 454, 544
ApeKI	GCWGC	5 cut(s)	329, 563, 566, 569, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	289, 545
AsuHPI	GGTGA	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	2 cut(s)	157, 619
BbvI	GCAGC	5 cut(s)	316, 556, 575, 578, 584
BccI	CCATC	2 cut(s)	238, 472
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	4 cut(s)	345, 363, 444, 627
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	7 cut(s)	63, 330, 538, 564, 567, 570, 573
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	7 cut(s)	64, 331, 539, 565, 568, 571, 574
Bme1390I	CCNGG	4 cut(s)	345, 363, 444, 627
BmgT120I	GGNCC	2 cut(s)	289, 545
BmiI	GGNNCC	3 cut(s)	94, 441, 580
BmrFI	CCNGG	4 cut(s)	345, 363, 444, 627
BmsI	GCATC	1 cut(s)	550
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	541
Bpu1102I	GCTNAGC	1 cut(s)	72
Bsa29I	ATCGAT	2 cut(s)	84, 558
BsaHI	GRCGYC	3 cut(s)	93, 260, 633
BsaJI	CCNNGG	3 cut(s)	63, 225, 626
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	6 cut(s)	211, 283, 449, 626, 648, 649
BseBI	CCWGG	4 cut(s)	345, 363, 444, 627
BseCI	ATCGAT	2 cut(s)	84, 558
BseDI	CCNNGG	3 cut(s)	63, 225, 626
BseGI	GGATG	2 cut(s)	84, 342
BseLI	CCNNNNNNNGG	6 cut(s)	211, 283, 449, 626, 648, 649
BseXI	GCAGC	5 cut(s)	316, 556, 575, 578, 584
BseYI	CCCAGC	3 cut(s)	254, 332, 470
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	4 cut(s)	290, 343, 456, 546
BshNI	GGYRCC	1 cut(s)	92
BshVI	ATCGAT	2 cut(s)	84, 558
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	157, 619
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	6 cut(s)	211, 283, 449, 626, 648, 649
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	4 cut(s)	290, 343, 456, 546
Bsp1286I	GDGCHC	2 cut(s)	157, 619
Bsp143I	GATC	3 cut(s)	21, 81, 238
Bsp1720I	GCTNAGC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	5 cut(s)	63, 65, 76, 537, 649
BspANI	GGCC	4 cut(s)	290, 343, 456, 546
BspDI	ATCGAT	2 cut(s)	84, 558
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	94, 441, 580
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	63, 225, 626
BssMI	GATC	3 cut(s)	21, 81, 238
BssNI	GRCGYC	3 cut(s)	93, 260, 633
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	4 cut(s)	345, 363, 444, 627
Bst4CI	ACNGT	2 cut(s)	436, 587
BstACI	GRCGYC	3 cut(s)	93, 260, 633
BstAPI	GCANNNNNTGC	2 cut(s)	59, 569
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	72, 541
BstDSI	CCRYGG	2 cut(s)	63, 225
BstF5I	GGATG	2 cut(s)	84, 342
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	3 cut(s)	24, 84, 241
BstMBI	GATC	3 cut(s)	21, 81, 238
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 543, 569, 572, 578
BstNI	CCWGG	4 cut(s)	345, 363, 444, 627
BstSCI	CCNGG	4 cut(s)	343, 361, 442, 625
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	5 cut(s)	316, 556, 575, 578, 584
BstXI	CCANNNNNNTGG	1 cut(s)	478
Bsu15I	ATCGAT	2 cut(s)	84, 558
BsuRI	GGCC	4 cut(s)	290, 343, 456, 546
BsuTUI	ATCGAT	2 cut(s)	84, 558
BtgI	CCRYGG	2 cut(s)	63, 225
BtsCI	GGATG	2 cut(s)	84, 342
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	1 cut(s)	651
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	289, 545
Cfr42I	CCGCGG	1 cut(s)	66
ClaI	ATCGAT	2 cut(s)	84, 558
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	402, 508
CviAII	CATG	4 cut(s)	109, 226, 466, 475
CviQI	GTAC	2 cut(s)	402, 508
DdeI	CTNAG	2 cut(s)	72, 541
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	3 cut(s)	23, 83, 240
DpnII	GATC	3 cut(s)	21, 81, 238
Ecl136II	GAGCTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	619
Eco53kI	GAGCTC	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	4 cut(s)	343, 361, 442, 625
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	619
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	112, 229, 469, 478
FaiI	YATR	8 cut(s)	110, 119, 193, 227, 234, 467, 476, 638
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	4 cut(s)	108, 225, 465, 474
FauI	CCCGC	1 cut(s)	642
Fnu4HI	GCNGC	7 cut(s)	63, 330, 538, 564, 567, 570, 573
FokI	GGATG	2 cut(s)	91, 349
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	7 cut(s)	63, 330, 538, 564, 567, 570, 573
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	7 cut(s)	63, 330, 538, 564, 567, 570, 573
GsaI	CCCAGC	3 cut(s)	258, 336, 474
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	4 cut(s)	290, 343, 456, 546
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	3 cut(s)	93, 260, 633
Hin1II	CATG	4 cut(s)	112, 229, 469, 478
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	3 cut(s)	46, 243, 621
Hpy188III	TCNNGA	2 cut(s)	166, 197
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	2 cut(s)	34, 596
HpyAV	CCTTC	2 cut(s)	392, 558
HpyCH4III	ACNGT	2 cut(s)	436, 587
HpyCH4IV	ACGT	2 cut(s)	279, 633
HpyCH4V	TGCA	4 cut(s)	53, 191, 563, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 543, 569, 572, 578
HpyF3I	CTNAG	2 cut(s)	72, 541
HpySE526I	ACGT	2 cut(s)	279, 633
Hsp92I	GRCGYC	3 cut(s)	93, 260, 633
Hsp92II	CATG	4 cut(s)	112, 229, 469, 478
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	21, 81, 238
LmnI	GCTCC	6 cut(s)	31, 160, 439, 578, 614, 622
Lsp1109I	GCAGC	5 cut(s)	316, 556, 575, 578, 584
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	279, 633
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	23, 83, 240
MboI	GATC	3 cut(s)	21, 81, 238
MboII	GAAGA	3 cut(s)	31, 328, 331
MfeI	CAATTG	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	157, 619
MluCI	AATT	2 cut(s)	97, 298
Mly113I	GGCGCC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	61, 168, 277, 333, 399, 446, 492, 520
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	3 cut(s)	209, 324, 682
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	3 cut(s)	65, 569, 575
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	4 cut(s)	345, 363, 444, 627
MunI	CAATTG	1 cut(s)	97
MvaI	CCWGG	4 cut(s)	345, 363, 444, 627
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 543, 569, 572, 578
NarI	GGCGCC	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	21, 81, 238
NlaIII	CATG	4 cut(s)	112, 229, 469, 478
NlaIV	GGNNCC	3 cut(s)	94, 441, 580
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	7 cut(s)	64, 331, 539, 565, 568, 571, 574
PluTI	GGCGCC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	619
Psp6I	CCWGG	4 cut(s)	343, 361, 442, 625
PspFI	CCCAGC	3 cut(s)	254, 332, 470
PspGI	CCWGG	4 cut(s)	343, 361, 442, 625
PspN4I	GGNNCC	3 cut(s)	94, 441, 580
PspPI	GGNCC	2 cut(s)	289, 545
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	569
PsyI	GACNNNGTC	1 cut(s)	485
PvuII	CAGCTG	2 cut(s)	569, 575
RsaI	GTAC	2 cut(s)	403, 509
RsaNI	GTAC	2 cut(s)	402, 508
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	619
SacII	CCGCGG	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	209, 324, 682
SatI	GCNGC	7 cut(s)	63, 330, 538, 564, 567, 570, 573
Sau3AI	GATC	3 cut(s)	21, 81, 238
Sau96I	GGNCC	2 cut(s)	289, 545
ScrFI	CCNGG	4 cut(s)	345, 363, 444, 627
SduI	GDGCHC	2 cut(s)	157, 619
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	570
SfoI	GGCGCC	1 cut(s)	94
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	97, 298
SsiI	CCGC	5 cut(s)	63, 65, 76, 537, 649
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	4 cut(s)	343, 361, 442, 625
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	436, 587
TaiI	ACGT	2 cut(s)	282, 636
TaqI	TCGA	6 cut(s)	32, 84, 165, 396, 414, 558
TasI	AATT	2 cut(s)	97, 298
TauI	GCSGC	2 cut(s)	65, 540
Tru1I	TTAA	3 cut(s)	209, 324, 682
Tru9I	TTAA	3 cut(s)	209, 324, 682
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	5 cut(s)	329, 563, 566, 569, 572
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	612
Tth111I	GACNNNGTC	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	654
ZraI	GACGTC	1 cut(s)	634
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.