Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Forward (+)

835211 .. 837458

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1013300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGTGTGGCGGCGAAAATAGCCCCGTCGATGCTGTCGTCGGACTTCGCCAATTTGGCATCGGAGGCCGAGCGCATGCTCAAATGCGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCACTTTGTCCCGAATTTAACACTCGGTGCTCCGGTCATTCAGAGCTTGAGAAAGCACACAAAGGCGTATCTTGATTGTCACCTTATGGTCACAAATCCTCTTGATTATGTCGAACCTATGGGAAAAGCCGGTGCTTCAGGTTTTACATTTCATGTTGAAGTATCTAAAGACAATTGGCAAGAACTTGTTCAAAGAATTAAGTCCAAAGGCATGACGCCAGGTGTGGCATTAAAGCCCGGAACGCCAATTGAAGAAGTTTATCCTCTGATAGAAGGTGAAAATCATGTTGAAATGGTTCTTGTTATGACGGTAGAACCTGGGTTCGGGGGACAAAAATTCATGCCAGAAATGATGGAGAAGGTGCGCACACTAAGACAAAGGTACCCTTCGCTAGATATAGAGGTAGATGGTGGCTTAGGACCTTCAACGATTGACGTGGCAGCTTCAGCCGGAGCCAACTGCATAGTTGCAGGCAGTTCCGTGTTTGGAGCCCCTGAGCCTGCGACAGTAATATCCCTTTTGCGAAGTAGCGTTGAGGGAATTCAACAGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

227

Amino Acids

24.31

Weight (kDa)

5.37

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	6 - 203	4.6e-70	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	488
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	2 cut(s)	89, 504
AciI	CCGC	2 cut(s)	11, 87
AcsI	RAATTY	3 cut(s)	136, 458, 663
AcuI	CTGAAG	2 cut(s)	243, 552
AcyI	GRCGYC	2 cut(s)	90, 338
AdeI	CACNNNGTG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	281, 314, 374, 413, 549, 668
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	2 cut(s)	340, 439
AluBI	AGCT	2 cut(s)	168, 566
AluI	AGCT	2 cut(s)	168, 566
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	3 cut(s)	136, 458, 663
Asp700I	GAANNNNTTC	2 cut(s)	309, 417
Asp718I	GGTACC	1 cut(s)	504
AspLEI	GCGC	3 cut(s)	75, 92, 489
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	194, 410
AvaII	GGWCC	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	126
BaeI	ACNNNNGTAYC	2 cut(s)	488, 521
BanI	GGYRCC	2 cut(s)	89, 504
BanII	GRGCYC	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	113, 469, 524
BciT130I	CCWGG	2 cut(s)	342, 441
BcnI	CCSGG	1 cut(s)	360
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	3 cut(s)	12, 88, 564
BlsI	GCNGC	3 cut(s)	13, 89, 565
Bme1390I	CCNGG	3 cut(s)	342, 360, 441
Bme18I	GGWCC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	5 cut(s)	91, 101, 506, 577, 613
BmrFI	CCNGG	3 cut(s)	342, 360, 441
BmsI	GCATC	2 cut(s)	21, 68
Bpu10I	CCTNAGC	2 cut(s)	538, 618
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	90, 338
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	342, 441
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	1 cut(s)	609
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	2 cut(s)	89, 504
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	155, 252, 360, 573
BslFI	GGGAC	2 cut(s)	116, 465
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	116, 465
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	126, 154, 616
BspACI	CCGC	2 cut(s)	11, 87
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	5 cut(s)	91, 101, 506, 577, 613
BspT107I	GGYRCC	2 cut(s)	89, 504
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	440
BssNI	GRCGYC	2 cut(s)	90, 338
Bst2UI	CCWGG	2 cut(s)	342, 441
Bst4CI	ACNGT	2 cut(s)	433, 631
BstACI	GRCGYC	2 cut(s)	90, 338
BstC8I	GCNNGC	3 cut(s)	77, 595, 624
BstDEI	CTNAG	3 cut(s)	494, 538, 618
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	75, 92, 489
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 56, 65, 364, 569
BstNI	CCWGG	2 cut(s)	342, 441
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	340, 358, 439
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	68
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	77, 595, 624
CfoI	GCGC	3 cut(s)	75, 92, 489
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	7 cut(s)	76, 106, 115, 275, 334, 407, 463
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	3 cut(s)	494, 538, 618
DinI	GGCGCC	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	243, 552
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	340, 439
EcoT38I	GRGCYC	1 cut(s)	616
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	7 cut(s)	79, 109, 118, 278, 337, 410, 466
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FaqI	GGGAC	2 cut(s)	116, 465
FatI	CATG	7 cut(s)	75, 105, 114, 274, 333, 406, 462
Fnu4HI	GCNGC	3 cut(s)	12, 88, 564
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	3 cut(s)	12, 88, 564
FspAI	RTGCGCAY	1 cut(s)	488
FspBI	CTAG	1 cut(s)	515
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	3 cut(s)	74, 91, 488
GluI	GCNGC	3 cut(s)	12, 88, 564
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	4 cut(s)	155, 252, 360, 573
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	3 cut(s)	75, 92, 489
Hin1I	GRCGYC	2 cut(s)	90, 338
Hin1II	CATG	7 cut(s)	79, 109, 118, 278, 337, 410, 466
Hin6I	GCGC	3 cut(s)	73, 90, 487
HinP1I	GCGC	3 cut(s)	73, 90, 487
HpaII	CCGG	4 cut(s)	155, 252, 360, 573
HphI	GGTGA	2 cut(s)	194, 410
Hpy188I	TCNGA	4 cut(s)	43, 64, 165, 390
Hpy188III	TCNNGA	3 cut(s)	133, 194, 224
Hpy99I	CGWCG	2 cut(s)	31, 43
HpyAV	CCTTC	4 cut(s)	389, 475, 519, 555
HpyCH4III	ACNGT	2 cut(s)	433, 631
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	2 cut(s)	585, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 56, 65, 364, 569
HpyF3I	CTNAG	3 cut(s)	494, 538, 618
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	2 cut(s)	90, 338
Hsp92II	CATG	7 cut(s)	79, 109, 118, 278, 337, 410, 466
HspAI	GCGC	3 cut(s)	73, 90, 487
KasI	GGCGCC	1 cut(s)	89
KpnI	GGTACC	1 cut(s)	508
LmnI	GCTCC	4 cut(s)	105, 157, 575, 611
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	2 cut(s)	21, 68
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	200, 211
MboII	GAAGA	1 cut(s)	386
MfeI	CAATTG	2 cut(s)	295, 369
MhlI	GDGCHC	3 cut(s)	126, 154, 616
MluCI	AATT	7 cut(s)	52, 136, 295, 318, 369, 458, 663
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	5 cut(s)	58, 231, 396, 517, 652
MroXI	GAANNNNTTC	2 cut(s)	309, 417
MseI	TTAA	3 cut(s)	140, 321, 353
MspI	CCGG	4 cut(s)	155, 252, 360, 573
MspR9I	CCNGG	3 cut(s)	342, 360, 441
MunI	CAATTG	2 cut(s)	295, 369
MvaI	CCWGG	2 cut(s)	342, 441
MwoI	GCNNNNNNNGC	5 cut(s)	20, 56, 65, 364, 569
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	360
NlaIII	CATG	7 cut(s)	79, 109, 118, 278, 337, 410, 466
NlaIV	GGNNCC	5 cut(s)	91, 101, 506, 577, 613
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	200, 211
NsbI	TGCGCA	1 cut(s)	488
NspI	RCATGY	1 cut(s)	79
PaeI	GCATGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	309, 417
PkrI	GCNGC	3 cut(s)	13, 89, 565
PluTI	GGCGCC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	340, 439
PspGI	CCWGG	2 cut(s)	340, 439
PspN4I	GGNNCC	5 cut(s)	91, 101, 506, 577, 613
PspPI	GGNCC	1 cut(s)	542
PspPPI	RGGWCCY	1 cut(s)	542
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SaqAI	TTAA	3 cut(s)	140, 321, 353
SatI	GCNGC	3 cut(s)	12, 88, 564
Sau96I	GGNCC	1 cut(s)	542
ScrFI	CCNGG	3 cut(s)	342, 360, 441
SduI	GDGCHC	3 cut(s)	126, 154, 616
SfaNI	GCATC	2 cut(s)	21, 68
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	7 cut(s)	52, 136, 295, 318, 369, 458, 663
SsiI	CCGC	2 cut(s)	11, 87
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	340, 358, 439
TaaI	ACNGT	2 cut(s)	433, 631
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	2 cut(s)	29, 234
TasI	AATT	7 cut(s)	52, 136, 295, 318, 369, 458, 663
TauI	GCSGC	2 cut(s)	14, 90
Tru1I	TTAA	3 cut(s)	140, 321, 353
Tru9I	TTAA	3 cut(s)	140, 321, 353
TseFI	GTSAC	2 cut(s)	200, 211
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	200, 211
TspDTI	ATGAA	2 cut(s)	263, 451
TspGWI	ACGGA	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	3 cut(s)	136, 458, 663
XceI	RCATGY	1 cut(s)	79
XmnI	GAANNNNTTC	2 cut(s)	309, 417
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.