Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

88474578 .. 88476247

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG673400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTGTGGCGGCGAAAATAGCACCGTCGATGCTGTCGTCGGACTTTGCCAATTTGGCGTCGGAAGCCCACCGCATGCTCAAAGACGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTTCCGAATCTAACACTCGGTGCTCCGGTTATTCAGAGTTTGAGAAAGCATACAGAGGCATATCTGGATTGTCACCTTATGGTCACAAATCCTCTTGATTATGTTGAGCCGTTGGCAAAAGCTGGTGCTTCGGGTTTCACATTTCATGTTGAGGTATCCAAAGATAATTGGCAAGAGCTTGTTCAAAGGATCAAGTCCAAGGGCATGACACCAGGTGTGGCACTCAAGCCTGGAACTCCGATTGAAGAAGTTTTTCCTCTGGTGGAAGGTGAAATTCATGTGGACATGGTCCTCGTTATGACTGTGGAACCTGGATTTGGTGGACAGAAGTTCATGCCAGAAACAATGGATAAGGTTCGCACACTGAGAAAGAAGTATCCTTCACTAGACATAGAGGTAGATGGTGGCTTAGGGCCTTCAACCATTGACATTGCAGCTTCAGCCGGAGCAAACTGCATAGTTGCTGGAAGTTCAGTGTTTGGTGCCCCCGAACCTGCCAAAGTAATATCCGTCTTGAGAACTAGTGTTGAGGAATCTCAGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

225

Amino Acids

24.21

Weight (kDa)

5.49

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	6 - 203	2.2e-71	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	2 cut(s)	89, 611
AciI	CCGC	2 cut(s)	11, 73
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	2 cut(s)	59, 90
AdeI	CACNNNGTG	2 cut(s)	149, 344
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	314, 374, 549
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	3 cut(s)	340, 358, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	251, 307, 566
AluI	AGCT	3 cut(s)	251, 307, 566
Alw21I	GWGCWC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	418, 542
AsuHPI	GGTGA	2 cut(s)	194, 410
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	2 cut(s)	89, 611
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	2 cut(s)	113, 524
BceAI	ACGGC	2 cut(s)	103, 223
BciT130I	CCWGG	3 cut(s)	342, 360, 441
BciVI	GTATCC	2 cut(s)	295, 516
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	2 cut(s)	515, 651
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	631
BfuI	GTATCC	2 cut(s)	295, 516
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	12, 564
BlsI	GCNGC	2 cut(s)	13, 565
Bme1390I	CCNGG	3 cut(s)	342, 360, 441
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	418, 542
BmiI	GGNNCC	4 cut(s)	91, 101, 438, 613
BmrFI	CCNGG	3 cut(s)	342, 360, 441
BmsI	GCATC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	2 cut(s)	338, 664
BsaHI	GRCGYC	2 cut(s)	59, 90
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	3 cut(s)	342, 360, 441
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	1 cut(s)	544
BshNI	GGYRCC	2 cut(s)	89, 611
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	155, 573
BslI	CCNNNNNNNGG	1 cut(s)	446
BsnI	GGCC	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	154, 616
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	2 cut(s)	11, 73
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	91, 101, 438, 613
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	89, 611
BsrDI	GCAATG	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	2 cut(s)	59, 90
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	3 cut(s)	342, 360, 441
Bst4CI	ACNGT	2 cut(s)	27, 433
BstACI	GRCGYC	2 cut(s)	59, 90
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	494, 538, 666
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
BstNI	CCWGG	3 cut(s)	342, 360, 441
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	340, 358, 439
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	575
BsuI	GTATCC	2 cut(s)	295, 516
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	491, 609
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	418, 542
CseI	GACGC	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	340
CviAII	CATG	8 cut(s)	76, 106, 115, 275, 334, 407, 415, 463
DdeI	CTNAG	3 cut(s)	494, 538, 666
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraIII	CACNNNGTG	2 cut(s)	149, 344
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	340, 358, 439
EcoT14I	CCWWGG	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	8 cut(s)	79, 109, 118, 278, 337, 410, 418, 466
FatI	CATG	8 cut(s)	75, 105, 114, 274, 333, 406, 414, 462
Fnu4HI	GCNGC	2 cut(s)	12, 564
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	12, 564
FspBI	CTAG	2 cut(s)	515, 651
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	12, 564
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	2 cut(s)	155, 573
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	2 cut(s)	59, 90
Hin1II	CATG	8 cut(s)	79, 109, 118, 278, 337, 410, 418, 466
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	136, 662
HpaII	CCGG	2 cut(s)	155, 573
HphI	GGTGA	2 cut(s)	194, 410
Hpy166II	GTNNAC	2 cut(s)	412, 452
Hpy188I	TCNGA	6 cut(s)	43, 64, 135, 165, 369, 669
Hpy188III	TCNNGA	3 cut(s)	194, 224, 643
Hpy8I	GTNNAC	2 cut(s)	412, 452
Hpy99I	CGWCG	3 cut(s)	31, 43, 64
HpyAV	CCTTC	3 cut(s)	389, 519, 555
HpyCH4III	ACNGT	2 cut(s)	27, 433
HpyCH4V	TGCA	2 cut(s)	563, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
HpyF3I	CTNAG	3 cut(s)	494, 538, 666
Hsp92I	GRCGYC	2 cut(s)	59, 90
Hsp92II	CATG	8 cut(s)	79, 109, 118, 278, 337, 410, 418, 466
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	3 cut(s)	105, 157, 575
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	21
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	2 cut(s)	515, 651
MaeIII	GTNAC	2 cut(s)	200, 211
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	154, 616
MluCI	AATT	3 cut(s)	52, 295, 402
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	21, 42
MnlI	CCTC	7 cut(s)	178, 231, 274, 396, 431, 517, 652
MroXI	GAANNNNTTC	1 cut(s)	381
MspI	CCGG	2 cut(s)	155, 573
MspR9I	CCNGG	3 cut(s)	342, 360, 441
MvaI	CCWGG	3 cut(s)	342, 360, 441
MwoI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	8 cut(s)	79, 109, 118, 278, 337, 410, 418, 466
NlaIV	GGNNCC	4 cut(s)	91, 101, 438, 613
NmuCI	GTSAC	2 cut(s)	200, 211
NspI	RCATGY	1 cut(s)	79
PaeI	GCATGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	136, 662
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	13, 565
PluTI	GGCGCC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	340, 358, 439
PspGI	CCWGG	3 cut(s)	340, 358, 439
PspN4I	GGNNCC	4 cut(s)	91, 101, 438, 613
PspPI	GGNCC	2 cut(s)	418, 542
PsyI	GACNNNGTC	1 cut(s)	416
SatI	GCNGC	2 cut(s)	12, 564
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	2 cut(s)	418, 542
ScrFI	CCNGG	3 cut(s)	342, 360, 441
SduI	GDGCHC	2 cut(s)	154, 616
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	353, 643
SmoI	CTYRAG	2 cut(s)	353, 643
SpeI	ACTAGT	1 cut(s)	650
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	3 cut(s)	52, 295, 402
SsiI	CCGC	2 cut(s)	11, 73
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	515, 651
StyD4I	CCNGG	3 cut(s)	340, 358, 439
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	27, 433
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	52, 295, 402
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	136, 662
TscAI	CASTG	2 cut(s)	498, 609
TseFI	GTSAC	2 cut(s)	200, 211
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	200, 211
TspDTI	ATGAA	3 cut(s)	263, 395, 451
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	2 cut(s)	498, 609
Tth111I	GACNNNGTC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	515, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.