Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

90498342 .. 90500592

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG687300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGGTGTCATTTTTGTTTGTCTACAGGGCATATCTGGATTGTCACCTTATGGTCACAAATCCTCTTGATTATGTTGAGCCGTTGGCAAAAGCTGGTGCTTCGGGTTTCACATTTCATGTTGAGGTATCCAAAGATAATTGGCAAGAGCTTGTTCAAAGGATCAAGTCCAAGGGCATGACACCAGGTGTGGCACTCAAGCCTGGAACTCCGATTGAAGAAGTTTTTCCTCTGGTGGAAGGTGAAATTCATGTGGACATGGTCCTCGTTATGACTGTGGAACCTGGATTTGGTGGACAGAAGTTCATGCCAGAAACAATGGATAAGGTTCGCACACTGAGAAAGAAGTATCCTTCACTAGATATAGAGGTAGATGGTGGCTTAGGGCCTTCAACCATTGACATTGCAGCTTCAGCCGGAGCAAACTGCATAGTTGCTGGAAGTTCAGTGTTTGGTGCCCCCGAACCTGCCAAAGTAATATCCGTCTTGAGAACTAGTGTTGAGGAATCTCAGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

173

Amino Acids

18.76

Weight (kDa)

5.64

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	10 - 151	4.6e-45	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	158, 218, 393
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	3 cut(s)	184, 202, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	95, 151, 410
AluI	AGCT	3 cut(s)	95, 151, 410
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	262, 386
AsuHPI	GGTGA	2 cut(s)	38, 254
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	3 cut(s)	186, 204, 285
BciVI	GTATCC	2 cut(s)	139, 360
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	2 cut(s)	359, 495
BfmI	CTRYAG	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	2 cut(s)	139, 360
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	186, 204, 285
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	262, 386
BmiI	GGNNCC	2 cut(s)	282, 457
BmrFI	CCNGG	3 cut(s)	186, 204, 285
Bpu10I	CCTNAGC	1 cut(s)	382
BpuEI	CTTGAG	2 cut(s)	182, 508
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	186, 204, 285
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	282, 457
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	186, 204, 285
Bst4CI	ACNGT	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	338, 382, 510
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	3 cut(s)	186, 204, 285
BstSCI	CCNGG	3 cut(s)	184, 202, 283
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	419
BsuI	GTATCC	2 cut(s)	139, 360
BsuRI	GGCC	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	335, 453
BveI	ACCTGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	262, 386
CsiI	ACCWGGT	1 cut(s)	184
CviAII	CATG	5 cut(s)	119, 178, 251, 259, 307
CviJI	RGCY	8 cut(s)	82, 95, 151, 202, 381, 388, 410, 416
CviKI_1	RGCY	8 cut(s)	82, 95, 151, 202, 381, 388, 410, 416
DdeI	CTNAG	3 cut(s)	338, 382, 510
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DraIII	CACNNNGTG	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	3 cut(s)	184, 202, 283
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	122, 181, 254, 262, 310
FatI	CATG	5 cut(s)	118, 177, 250, 258, 306
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	359, 495
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	5 cut(s)	122, 181, 254, 262, 310
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	2 cut(s)	38, 254
Hpy166II	GTNNAC	3 cut(s)	25, 256, 296
Hpy188I	TCNGA	2 cut(s)	213, 513
Hpy188III	TCNNGA	3 cut(s)	38, 68, 487
Hpy8I	GTNNAC	3 cut(s)	25, 256, 296
HpyAV	CCTTC	3 cut(s)	233, 363, 399
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	407, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	3 cut(s)	338, 382, 510
Hsp92II	CATG	5 cut(s)	122, 181, 254, 262, 310
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	419
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	2 cut(s)	359, 495
MaeIII	GTNAC	2 cut(s)	44, 55
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	2 cut(s)	139, 246
MnlI	CCTC	6 cut(s)	75, 118, 240, 275, 361, 496
MroXI	GAANNNNTTC	1 cut(s)	225
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	3 cut(s)	186, 204, 285
MvaI	CCWGG	3 cut(s)	186, 204, 285
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	5 cut(s)	122, 181, 254, 262, 310
NlaIV	GGNNCC	2 cut(s)	282, 457
NmuCI	GTSAC	2 cut(s)	44, 55
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	506
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	184, 202, 283
PspGI	CCWGG	3 cut(s)	184, 202, 283
PspN4I	GGNNCC	2 cut(s)	282, 457
PspPI	GGNCC	2 cut(s)	262, 386
PsyI	GACNNNGTC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	262, 386
ScrFI	CCNGG	3 cut(s)	186, 204, 285
SduI	GDGCHC	1 cut(s)	460
SexAI	ACCWGGT	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	197, 487
SmoI	CTYRAG	2 cut(s)	197, 487
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	2 cut(s)	139, 246
SspMI	CTAG	2 cut(s)	359, 495
StyD4I	CCNGG	3 cut(s)	184, 202, 283
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	2 cut(s)	139, 246
TfiI	GAWTC	1 cut(s)	506
TscAI	CASTG	2 cut(s)	342, 453
TseFI	GTSAC	2 cut(s)	44, 55
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	44, 55
TspDTI	ATGAA	4 cut(s)	17, 107, 239, 295
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	2 cut(s)	342, 453
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	2 cut(s)	359, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.