Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

70546354 .. 70548202

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0581600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGATGGATTGTTGGGAATGGTAAGTCCATCAAATTTTGGACCTTCAATTGGGTGGTTGACCGCCCTCTTTTTGATATTATCGCTGATCATCTTAAAGATAGAATTGATCTGAATGAAACAGTAGTTGATTATATTGATAACGGGGTTTGGAATAAACCTAAACGTGCAAACTTTTTAGATAATAATATTGTTGATCGTATTACTAGTATTCCTATTTCCTATACTCATCCAGAGGATGAATTTGTTTTGGGGCCTTCATCTACTGGCCAATTCACGATAAAGTCTGCAGCTTGGCTGGACAGCATGGAAAAACACAGCAATATTAATCTTTTACATAAGCTCTGGAAACTGAATATTCCTCTGAATGTTAAAATTTTTAGATGGCTTCTACTAAGAGGGAGGCTAAAAACAAGAGACATACTTTCCAAGTTTGGCTATATTGATGATAATTTCTGTCCTTTATGCGATAACGATAATGAAACTGCTAACCATTTGTTTGGTTCTTGTGAGTTTACTAGTGAAGTATGGAGATTAGCTCAGGTCCAAACTCCAATTAACTGGGACGAGGGCCACTTAAAGGTTTTCCAGGAAATGTTTGTTAACCAACCTTATGATAATGAAAAATTTGCCAAGATGATAATAATTTGTTGGCAAGTGTGGAAAGCCATAAATGAAACTATCTTTAGAGGAGCTGTTAGCTTCCCTAATGCAGTTGTAGCAGCCTCGGTTGCCATACTAAATGATATTAAAGGAATGGATCATCCAAATAGGGGGGTTGCCTCACAAAACATTCCATCCAAAATTCTTTGGCAACCTCCTCCTAGAAGTTTTGTCAAGATTAATTTTGATGGCTCTGGACAAAGCAACTATTCAGCAGGTGGTTTTATTATTAGAGATGAGACTGGGAAACCACTTTTTGTTGCTGTTAAAGGTTTTGGGAGCACCACAGTTCCTGTGGCAGAAGTGACAGCACTATGCAACAGCCTTGTTAGTACACAACAACAAGCAATATTTAAACCTTCAGAGCCGGGGATTCCAATGGCGGCCAGTAACGAAGAGAAGAAGCCCACAAAGCCTCCATCCGTTCCGGGCAAAGATGACAGCAAACCTGTGCTTCAAGACCCAATTCTGATGTCGGACCCAATTGAGACAGAGGAAGGCGTGCTGAGATTGCCTCCATCTTCCCTACTCCCTGACCATCAAGAAACGCTCAACACCAACTCTTCTTTTACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

413

Amino Acids

46.5

Weight (kDa)

5.95

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	97 - 177	2.1e-19	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	869
Acc36I	ACCTGC	1 cut(s)	869
AciI	CCGC	2 cut(s)	64, 1046
AclWI	GGATC	1 cut(s)	768
AcoI	YGGCCR	2 cut(s)	268, 1047
AcsI	RAATTY	5 cut(s)	35, 242, 375, 626, 804
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	1 cut(s)	997
AfiI	CCNNNNNNNGG	3 cut(s)	51, 580, 773
AgsI	TTSAA	2 cut(s)	49, 1121
AhlI	ACTAGT	3 cut(s)	206, 518, 1235
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	5 cut(s)	293, 343, 539, 695, 702
AluI	AGCT	5 cut(s)	293, 343, 539, 695, 702
Alw21I	GWGCWC	1 cut(s)	947
Alw26I	GTCTC	3 cut(s)	411, 896, 1145
AlwI	GGATC	1 cut(s)	768
AlwNI	CAGNNNCTG	1 cut(s)	956
AoxI	GGCC	4 cut(s)	254, 268, 571, 1047
ApeKI	GCWGC	2 cut(s)	290, 722
ApoI	RAATTY	5 cut(s)	35, 242, 375, 626, 804
AseI	ATTAAT	2 cut(s)	327, 843
AspS9I	GGNCC	5 cut(s)	42, 254, 544, 571, 1141
AsuC2I	CCSGG	2 cut(s)	1032, 1092
AvaII	GGWCC	3 cut(s)	42, 544, 1141
BalI	TGGCCA	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	947
BbvI	GCAGC	2 cut(s)	302, 734
BccI	CCATC	7 cut(s)	38, 378, 805, 845, 1090, 1189, 1209
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	1032, 1092
BcoDI	GTCTC	3 cut(s)	411, 896, 1145
BcuI	ACTAGT	3 cut(s)	206, 518, 1235
BfaI	CTAG	4 cut(s)	207, 519, 825, 1236
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	869
BisI	GCNGC	3 cut(s)	291, 723, 1047
BlsI	GCNGC	3 cut(s)	292, 724, 1048
Bme1390I	CCNGG	3 cut(s)	590, 1032, 1092
Bme18I	GGWCC	3 cut(s)	42, 544, 1141
BmgT120I	GGNCC	5 cut(s)	42, 254, 544, 571, 1141
BmiI	GGNNCC	2 cut(s)	255, 1143
BmrFI	CCNGG	3 cut(s)	590, 1032, 1092
BmrI	ACTGGG	2 cut(s)	571, 915
BmuI	ACTGGG	2 cut(s)	571, 915
BplI	GAGNNNNNCTC	4 cut(s)	523, 555, 1162, 1194
Bpu10I	CCTNAGC	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	1032, 1092
BsaJI	CCNNGG	2 cut(s)	726, 1031
BsaXI	ACNNNNNCTCC	2 cut(s)	1063, 1093
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 580, 773
Bse1I	ACTGG	4 cut(s)	271, 566, 910, 1050
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	726, 1031
BseGI	GGATG	5 cut(s)	229, 244, 763, 797, 1082
BseLI	CCNNNNNNNGG	3 cut(s)	51, 580, 773
BseMII	CTCAG	2 cut(s)	554, 1160
BseNI	ACTGG	4 cut(s)	271, 566, 910, 1050
BseRI	GAGGAG	2 cut(s)	705, 810
BseXI	GCAGC	2 cut(s)	302, 734
BshFI	GGCC	4 cut(s)	256, 270, 573, 1049
BsiHKAI	GWGCWC	1 cut(s)	947
BsiSI	CCGG	2 cut(s)	1031, 1091
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	3 cut(s)	51, 580, 773
BsmAI	GTCTC	3 cut(s)	411, 896, 1145
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	4 cut(s)	256, 270, 573, 1049
Bsp1286I	GDGCHC	1 cut(s)	947
Bsp143I	GATC	4 cut(s)	88, 109, 196, 760
BspACI	CCGC	2 cut(s)	64, 1046
BspANI	GGCC	4 cut(s)	256, 270, 573, 1049
BspCNI	CTCAG	2 cut(s)	553, 1161
BspLI	GGNNCC	2 cut(s)	255, 1143
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	869
BspPI	GGATC	1 cut(s)	768
BsrI	ACTGG	4 cut(s)	271, 566, 910, 1050
BssECI	CCNNGG	2 cut(s)	726, 1031
BssMI	GATC	4 cut(s)	88, 109, 196, 760
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	124, 952
Bst6I	CTCTTC	2 cut(s)	1053, 1231
BstC8I	GCNNGC	1 cut(s)	1166
BstDEI	CTNAG	3 cut(s)	395, 540, 1169
BstF5I	GGATG	5 cut(s)	229, 244, 763, 797, 1082
BstKTI	GATC	4 cut(s)	91, 112, 199, 763
BstMAI	GTCTC	3 cut(s)	411, 896, 1145
BstMBI	GATC	4 cut(s)	88, 109, 196, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	719, 731, 1075, 1174
BstNI	CCWGG	1 cut(s)	590
BstSCI	CCNGG	3 cut(s)	588, 1030, 1090
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	302, 734
BstXI	CCANNNNNNTGG	2 cut(s)	500, 561
BsuRI	GGCC	4 cut(s)	256, 270, 573, 1049
BtsCI	GGATG	5 cut(s)	229, 244, 763, 797, 1082
BveI	ACCTGC	1 cut(s)	869
Cac8I	GCNNGC	1 cut(s)	1166
CaiI	CAGNNNCTG	1 cut(s)	956
Cfr13I	GGNCC	5 cut(s)	42, 254, 544, 571, 1141
Csp6I	GTAC	1 cut(s)	996
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	1 cut(s)	996
DdeI	CTNAG	3 cut(s)	395, 540, 1169
DpnI	GATC	4 cut(s)	90, 111, 198, 762
DpnII	GATC	4 cut(s)	88, 109, 196, 760
DraI	TTTAAA	1 cut(s)	1018
EaeI	YGGCCR	2 cut(s)	268, 1047
Eam1104I	CTCTTC	2 cut(s)	1053, 1231
EarI	CTCTTC	2 cut(s)	1053, 1231
Eco47I	GGWCC	3 cut(s)	42, 544, 1141
Eco57I	CTGAAG	1 cut(s)	1008
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	588
FaeI	CATG	1 cut(s)	310
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	291, 723, 1047
FokI	GGATG	5 cut(s)	216, 251, 750, 784, 1069
Fsp4HI	GCNGC	3 cut(s)	291, 723, 1047
FspBI	CTAG	4 cut(s)	207, 519, 825, 1236
GluI	GCNGC	3 cut(s)	291, 723, 1047
HaeIII	GGCC	4 cut(s)	256, 270, 573, 1049
HapII	CCGG	2 cut(s)	1031, 1091
Hin1II	CATG	1 cut(s)	310
HincII	GTYRAC	2 cut(s)	61, 604
HindII	GTYRAC	2 cut(s)	61, 604
HinfI	GANTC	1 cut(s)	1036
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	2 cut(s)	1031, 1091
Hpy166II	GTNNAC	4 cut(s)	61, 516, 604, 998
Hpy188I	TCNGA	5 cut(s)	114, 366, 1027, 1134, 1141
Hpy188III	TCNNGA	7 cut(s)	233, 277, 346, 838, 858, 1121, 1205
Hpy8I	GTNNAC	4 cut(s)	61, 516, 604, 998
HpyAV	CCTTC	4 cut(s)	55, 267, 1032, 1154
HpyCH4III	ACNGT	2 cut(s)	124, 952
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	4 cut(s)	170, 290, 713, 981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	719, 731, 1075, 1174
HpyF3I	CTNAG	3 cut(s)	395, 540, 1169
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	88, 109, 196, 760
LmnI	GCTCC	2 cut(s)	692, 942
Lsp1109I	GCAGC	2 cut(s)	302, 734
MaeI	CTAG	4 cut(s)	207, 519, 825, 1236
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	967, 1052
MalI	GATC	4 cut(s)	90, 111, 198, 762
MboI	GATC	4 cut(s)	88, 109, 196, 760
MboII	GAAGA	4 cut(s)	1070, 1075, 1176, 1218
MfeI	CAATTG	2 cut(s)	49, 1146
MhlI	GDGCHC	1 cut(s)	947
MlsI	TGGCCA	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	1119
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	270
MspI	CCGG	2 cut(s)	1031, 1091
MspR9I	CCNGG	3 cut(s)	590, 1032, 1092
MunI	CAATTG	2 cut(s)	49, 1146
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	4 cut(s)	719, 731, 1075, 1174
NciI	CCSGG	2 cut(s)	1032, 1092
NdeII	GATC	4 cut(s)	88, 109, 196, 760
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	2 cut(s)	255, 1143
NmuCI	GTSAC	1 cut(s)	967
PaqCI	CACCTGC	1 cut(s)	869
PfeI	GAWTC	1 cut(s)	1036
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	292, 724, 1048
PshBI	ATTAAT	2 cut(s)	327, 843
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	2 cut(s)	255, 1143
PspPI	GGNCC	5 cut(s)	42, 254, 544, 571, 1141
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	956
RsaI	GTAC	1 cut(s)	997
RsaNI	GTAC	1 cut(s)	996
SatI	GCNGC	3 cut(s)	291, 723, 1047
Sau3AI	GATC	4 cut(s)	88, 109, 196, 760
Sau96I	GGNCC	5 cut(s)	42, 254, 544, 571, 1141
ScrFI	CCNGG	3 cut(s)	590, 1032, 1092
SduI	GDGCHC	1 cut(s)	947
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	3 cut(s)	42, 544, 1141
SpeI	ACTAGT	3 cut(s)	206, 518, 1235
SsiI	CCGC	2 cut(s)	64, 1046
SspI	AATATT	4 cut(s)	190, 325, 358, 1014
SspMI	CTAG	4 cut(s)	207, 519, 825, 1236
StyD4I	CCNGG	3 cut(s)	588, 1030, 1090
TaaI	ACNGT	2 cut(s)	124, 952
TaiI	ACGT	1 cut(s)	169
TatI	WGTACW	1 cut(s)	995
TauI	GCSGC	1 cut(s)	1049
TfiI	GAWTC	1 cut(s)	1036
TseFI	GTSAC	1 cut(s)	967
TseI	GCWGC	2 cut(s)	290, 722
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	6 cut(s)	132, 249, 255, 495, 636, 690
TspGWI	ACGGA	1 cut(s)	1075
VpaK11BI	GGWCC	3 cut(s)	42, 544, 1141
VspI	ATTAAT	2 cut(s)	327, 843
XapI	RAATTY	5 cut(s)	35, 242, 375, 626, 804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XspI	CTAG	4 cut(s)	207, 519, 825, 1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.