Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Forward (+)

70563425 .. 70564756

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0581700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGAGGATTAGAATGGTGACGGTGATGGTGGTGGTGGTGGGGTTTCTAACGACGAGCGCGGCGGCCAAGCTGCATAAGGTGGGAGACGAACAAGGATGGAATCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGGTGAATGGCTCATATTTAATTTCGACAAGAGGTACTACACTGCACTGGAGGTGAACAAGACCAGTTTTGACAGCTGCAATGACAAAGTTTTCATAACCAACATCACCCGTGGCGGGCGAGATGTGTTTGAACTGAAGGAGGCTAGGCCGTACTACTTCCTCTCAAGCGGAGGCTACTGCTACCATGGAATGAAACTTGCTCTTGTTGTCCAAGAACAGCCCCCGCTTGCTCCGGCACAGGCTCCAGCCCTGAATGCTTCTCCCAATTCATTAACCTCCTGCGCTAAAATCTCCATTCTGTCCCTCATTGTGGTTTCCTTTGCTTTGATGACCAACTTTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

166

Amino Acids

18.67

Weight (kDa)

8.41

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 115	1.7e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	62, 65, 132, 267, 321, 377
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	188, 305
AfiI	CCNNNNNNNGG	2 cut(s)	267, 463
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	2 cut(s)	73, 228
AluI	AGCT	2 cut(s)	73, 228
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	66, 299
ApeKI	GCWGC	2 cut(s)	73, 228
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	62, 437
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	5 cut(s)	31, 37, 167, 217, 250
AvaII	GGWCC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	60, 215
BccI	CCATC	2 cut(s)	22, 93
BceAI	ACGGC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	4 cut(s)	63, 66, 74, 229
BlsI	GCNGC	4 cut(s)	64, 67, 75, 230
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	396
BpmI	CTGGAG	2 cut(s)	221, 381
BpuEI	CTTGAG	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	262, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 463
Bse1I	ACTGG	2 cut(s)	204, 216
Bse3DI	GCAATG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	262, 337
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	2 cut(s)	267, 463
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	204, 216
BseXI	GCAGC	2 cut(s)	60, 215
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	68, 301
BsiSI	CCGG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	267, 463
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	68, 301
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	6 cut(s)	62, 65, 132, 267, 321, 377
BspANI	GGCC	2 cut(s)	68, 301
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	204, 216
BssECI	CCNNGG	2 cut(s)	262, 337
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	269, 381
BstDSI	CCRYGG	2 cut(s)	262, 337
BstF5I	GGATG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	62, 437
BstMAI	GTCTC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	60, 215
BsuRI	GGCC	2 cut(s)	68, 301
BtgI	CCRYGG	2 cut(s)	262, 337
BtsCI	GGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 197
Cac8I	GCNNGC	2 cut(s)	269, 381
CfoI	GCGC	2 cut(s)	62, 437
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	187, 304
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	2 cut(s)	187, 304
EaeI	YGGCCR	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	341
FaiI	YATR	4 cut(s)	78, 167, 248, 339
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	1 cut(s)	337
FauI	CCCGC	2 cut(s)	260, 384
Fnu4HI	GCNGC	4 cut(s)	63, 66, 74, 229
FokI	GGATG	1 cut(s)	111
Fsp4HI	GCNGC	4 cut(s)	63, 66, 74, 229
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	61, 436
GluI	GCNGC	4 cut(s)	63, 66, 74, 229
GsuI	CTGGAG	2 cut(s)	221, 381
HaeIII	GGCC	2 cut(s)	68, 301
HapII	CCGG	1 cut(s)	386
HhaI	GCGC	2 cut(s)	62, 437
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	2 cut(s)	60, 435
HinP1I	GCGC	2 cut(s)	60, 435
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	5 cut(s)	31, 37, 167, 217, 250
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	58, 155
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	111, 150
HpyCH4V	TGCA	3 cut(s)	76, 197, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpySE526I	ACGT	2 cut(s)	111, 150
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	2 cut(s)	60, 435
LmnI	GCTCC	2 cut(s)	388, 400
LpnPI	CCDG	7 cut(s)	185, 229, 377, 399, 411, 416, 445
Lsp1109I	GCAGC	2 cut(s)	60, 215
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	2 cut(s)	111, 150
MaeIII	GTNAC	1 cut(s)	19
MluCI	AATT	4 cut(s)	115, 143, 172, 418
MnlI	CCTC	7 cut(s)	177, 196, 286, 317, 323, 439, 467
MseI	TTAA	2 cut(s)	171, 425
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	412
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	337
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	64, 67, 75, 230
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PvuII	CAGCTG	1 cut(s)	228
RsaI	GTAC	2 cut(s)	188, 305
RsaNI	GTAC	2 cut(s)	187, 304
SaqAI	TTAA	2 cut(s)	171, 425
SatI	GCNGC	4 cut(s)	63, 66, 74, 229
Sau96I	GGNCC	1 cut(s)	129
SetI	ASST	8 cut(s)	75, 84, 114, 153, 188, 207, 230, 431
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	4 cut(s)	115, 143, 172, 418
SsiI	CCGC	6 cut(s)	62, 65, 132, 267, 321, 377
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	114, 153
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	115, 143, 172, 418
TauI	GCSGC	2 cut(s)	65, 68
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	171, 425
Tru9I	TTAA	2 cut(s)	171, 425
TscAI	CASTG	2 cut(s)	199, 204
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	73, 228
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	235, 359, 411
TspRI	CASTG	2 cut(s)	199, 204
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.