Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

26698331 .. 26701441

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGTGTGGCGGCGAAAATAGCACCGTCGATGCTGTCGTCGGACTTTGCCAATTTGGCATCGGAGGCCGAGCGCATGCTCAAATTTGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCACTTTGTCCCAAACTTAACACTTGGTGCACCCGTCATTCAGAGTTTGAGAAAGCACACAGAGGCGTATTTGGATTGTCACCTTATGGTTACAAATCCTCTTGATTATGTAGAACCTTTGTCGAAAGCTGGTGCTTCAGGTTTTACATTTCATGTCGAGGTATCCAAAGAAAATTGGCAAGAACTTGTTCAAAGAATTAAGTCCAAGGGCATGAAGCCTGGTGTGGCATTAAAGCCTGGAACACCAATTGAAGATGTTTATCCTCTGGTTGAAGGTGAAAATCCCGTGGAAATGGTCCTTGTTATGACTGTAGAACCTGGATTTGGTGGACAAAAGTTCATGCCAGAAATGATGGAGAAGGTGCGCACGCTGAGAGAAAGATACCCTTCGCTAGATATTGAGGTAGATGGTGGCCTAGGGCCTTCAACCATTAACACGGCAGCTTCTGCCGGAGCCAACTGCATAGTTGCTGGAAGTTCAGTGTTTGGAGCCTCAGACCCTAGTGCAGTAATATCCCTTTTGAGAAGTAGTGTTGAGGAATCTCAACACAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

227

Amino Acids

24.36

Weight (kDa)

5.15

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	314, 374, 395, 549
AjnI	CCWGG	3 cut(s)	340, 358, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	2 cut(s)	251, 566
AluI	AGCT	2 cut(s)	251, 566
Alw21I	GWGCWC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	3 cut(s)	66, 535, 542
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	538
AspLEI	GCGC	3 cut(s)	75, 92, 489
AspS9I	GGNCC	2 cut(s)	418, 542
AsuHPI	GGTGA	2 cut(s)	194, 410
AvaII	GGWCC	1 cut(s)	418
AvrII	CCTAGG	1 cut(s)	538
BaeGI	GKGCMC	2 cut(s)	126, 154
BanI	GGYRCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	113, 469, 524
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	3 cut(s)	342, 360, 441
BciVI	GTATCC	1 cut(s)	295
BfaI	CTAG	3 cut(s)	515, 539, 624
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	295
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	12, 564
BlnI	CCTAGG	1 cut(s)	538
BlsI	GCNGC	2 cut(s)	13, 565
Bme1390I	CCNGG	3 cut(s)	342, 360, 441
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	418, 542
BmiI	GGNNCC	4 cut(s)	91, 101, 577, 613
BmrFI	CCNGG	3 cut(s)	342, 360, 441
BmsI	GCATC	2 cut(s)	21, 68
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	327, 408, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	3 cut(s)	342, 360, 441
BseDI	CCNNGG	3 cut(s)	327, 408, 538
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	485, 630
BseSI	GKGCMC	2 cut(s)	126, 154
BseXI	GCAGC	1 cut(s)	575
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	68, 537, 544
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	68, 537, 544
Bsp1286I	GDGCHC	2 cut(s)	126, 154
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	3 cut(s)	68, 537, 544
BspCNI	CTCAG	2 cut(s)	486, 629
BspLI	GGNNCC	4 cut(s)	91, 101, 577, 613
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	327, 408, 538
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	327, 538
Bst2UI	CCWGG	3 cut(s)	342, 360, 441
Bst4CI	ACNGT	2 cut(s)	27, 433
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	77, 491
BstDEI	CTNAG	2 cut(s)	494, 616
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	3 cut(s)	75, 92, 489
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
BstNI	CCWGG	3 cut(s)	342, 360, 441
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	340, 358, 439
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	2 cut(s)	126, 154
BstV1I	GCAGC	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	68, 537, 544
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	2 cut(s)	77, 491
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	3 cut(s)	75, 92, 489
Cfr13I	GGNCC	2 cut(s)	418, 542
CviAII	CATG	6 cut(s)	76, 106, 115, 275, 334, 463
DdeI	CTNAG	2 cut(s)	494, 616
DinI	GGCGCC	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	327, 538
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	340, 358, 439
EcoT14I	CCWWGG	2 cut(s)	327, 538
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	327, 538
FaeI	CATG	6 cut(s)	79, 109, 118, 278, 337, 466
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	6 cut(s)	75, 105, 114, 274, 333, 462
Fnu4HI	GCNGC	2 cut(s)	12, 564
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	12, 564
FspAI	RTGCGCAY	1 cut(s)	488
FspBI	CTAG	3 cut(s)	515, 539, 624
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	3 cut(s)	74, 91, 488
GluI	GCNGC	2 cut(s)	12, 564
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	68, 537, 544
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	3 cut(s)	75, 92, 489
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	6 cut(s)	79, 109, 118, 278, 337, 466
Hin6I	GCGC	3 cut(s)	73, 90, 487
HinP1I	GCGC	3 cut(s)	73, 90, 487
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	2 cut(s)	194, 410
Hpy166II	GTNNAC	2 cut(s)	152, 452
Hpy188I	TCNGA	4 cut(s)	43, 64, 165, 619
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	152, 452
Hpy99I	CGWCG	2 cut(s)	31, 43
HpyAV	CCTTC	4 cut(s)	389, 475, 519, 555
HpyCH4III	ACNGT	2 cut(s)	27, 433
HpyCH4V	TGCA	3 cut(s)	152, 585, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
HpyF3I	CTNAG	2 cut(s)	494, 616
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	79, 109, 118, 278, 337, 466
HspAI	GCGC	3 cut(s)	73, 90, 487
KasI	GGCGCC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	105, 575, 611
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	2 cut(s)	21, 68
MaeI	CTAG	3 cut(s)	515, 539, 624
MaeIII	GTNAC	2 cut(s)	200, 211
MboII	GAAGA	1 cut(s)	386
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	126, 154
MluCI	AATT	5 cut(s)	52, 83, 295, 318, 369
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	8 cut(s)	58, 178, 231, 274, 396, 517, 625, 652
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	4 cut(s)	140, 321, 353, 555
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	3 cut(s)	342, 360, 441
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	3 cut(s)	342, 360, 441
MwoI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
NarI	GGCGCC	1 cut(s)	90
NlaIII	CATG	6 cut(s)	79, 109, 118, 278, 337, 466
NlaIV	GGNNCC	4 cut(s)	91, 101, 577, 613
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	200
NsbI	TGCGCA	1 cut(s)	488
NspI	RCATGY	1 cut(s)	79
PaeI	GCATGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	2 cut(s)	13, 565
PluTI	GGCGCC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	340, 358, 439
PspGI	CCWGG	3 cut(s)	340, 358, 439
PspN4I	GGNNCC	4 cut(s)	91, 101, 577, 613
PspPI	GGNCC	2 cut(s)	418, 542
PstNI	CAGNNNCTG	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	140, 321, 353, 555
SatI	GCNGC	2 cut(s)	12, 564
Sau96I	GGNCC	2 cut(s)	418, 542
ScrFI	CCNGG	3 cut(s)	342, 360, 441
SduI	GDGCHC	2 cut(s)	126, 154
SfaNI	GCATC	2 cut(s)	21, 68
SfcI	CTRYAG	1 cut(s)	432
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	418
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	5 cut(s)	52, 83, 295, 318, 369
SsiI	CCGC	1 cut(s)	11
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	3 cut(s)	515, 539, 624
StyD4I	CCNGG	3 cut(s)	340, 358, 439
StyI	CCWWGG	2 cut(s)	327, 538
TaaI	ACNGT	2 cut(s)	27, 433
TaqI	TCGA	3 cut(s)	29, 245, 279
TasI	AATT	5 cut(s)	52, 83, 295, 318, 369
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	4 cut(s)	140, 321, 353, 555
Tru9I	TTAA	4 cut(s)	140, 321, 353, 555
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	263, 350, 451
TspRI	CASTG	1 cut(s)	609
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	79
XmaJI	CCTAGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	3 cut(s)	515, 539, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.