Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003920.1

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

66147 .. 66870

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003920.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgacaccaggtgtggcactcaagcctggaactccgattgaagaagtttttcctctggtggaaggtgaaattcgtgtggacatggtcctcgttatgactgtggaacctggatttggtggacagaagttcatgccagaaacaatggataaggttcgcacactgagaaagaagtatccttcactagatatagaggtagatggtggcttagggccttcaaccattgacattgcagcttcagctggagcaaactgcatagttgctggaagttcagtgtttggtgcccccgaacctgccaaagtaatatccctcttgagaactagtgttgaggaatctcagaaaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

114

Amino Acids

12.03

Weight (kDa)

4.95

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	41, 216
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	7, 25, 106
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	2 cut(s)	233, 239
AluI	AGCT	2 cut(s)	233, 239
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	85, 209
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	3 cut(s)	9, 27, 108
BciVI	GTATCC	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	182, 318
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	3 cut(s)	9, 27, 108
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	85, 209
BmiI	GGNNCC	2 cut(s)	105, 280
BmrFI	CCNGG	3 cut(s)	9, 27, 108
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	2 cut(s)	5, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	3 cut(s)	9, 27, 108
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	105, 280
BspMI	ACCTGC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	9, 27, 108
Bst4CI	ACNGT	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	161, 205, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	3 cut(s)	9, 27, 108
BstSCI	CCNGG	3 cut(s)	7, 25, 106
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	158, 276
BveI	ACCTGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	85, 209
CsiI	ACCWGGT	1 cut(s)	7
CviAII	CATG	2 cut(s)	82, 130
CviJI	RGCY	5 cut(s)	25, 204, 211, 233, 239
CviKI_1	RGCY	5 cut(s)	25, 204, 211, 233, 239
DdeI	CTNAG	3 cut(s)	161, 205, 333
DraIII	CACNNNGTG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	7, 25, 106
FaeI	CATG	2 cut(s)	85, 133
FaiI	YATR	5 cut(s)	83, 95, 131, 188, 254
FatI	CATG	2 cut(s)	81, 129
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	182, 318
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	85, 133
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	79, 119
Hpy188I	TCNGA	2 cut(s)	36, 336
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	2 cut(s)	79, 119
HpyAV	CCTTC	3 cut(s)	56, 186, 222
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	230, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	161, 205, 333
Hsp92II	CATG	2 cut(s)	85, 133
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	242
MabI	ACCWGGT	1 cut(s)	7
MaeI	CTAG	2 cut(s)	182, 318
MboII	GAAGA	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	5 cut(s)	63, 98, 184, 317, 319
MroXI	GAANNNNTTC	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	3 cut(s)	9, 27, 108
MvaI	CCWGG	3 cut(s)	9, 27, 108
MwoI	GCNNNNNNNGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	85, 133
NlaIV	GGNNCC	2 cut(s)	105, 280
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	232
Psp6I	CCWGG	3 cut(s)	7, 25, 106
PspGI	CCWGG	3 cut(s)	7, 25, 106
PspN4I	GGNNCC	2 cut(s)	105, 280
PspPI	GGNCC	2 cut(s)	85, 209
PsyI	GACNNNGTC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	239
SatI	GCNGC	1 cut(s)	231
Sau96I	GGNCC	2 cut(s)	85, 209
ScrFI	CCNGG	3 cut(s)	9, 27, 108
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	8 cut(s)	13, 67, 109, 153, 195, 235, 241, 292
SexAI	ACCWGGT	1 cut(s)	7
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	20, 310
SmoI	CTYRAG	2 cut(s)	20, 310
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	2 cut(s)	182, 318
StyD4I	CCNGG	3 cut(s)	7, 25, 106
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	329
TscAI	CASTG	2 cut(s)	165, 276
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	165, 276
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	182, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.