Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Forward (+)

1010896 .. 1013018

Gene Structure 2123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTGTGGCGGCGAAAATAGCACCGTCGATGCTGTCGTCGGACTTTGCCAATTTGGCGTCGGAGGCCCATCGAATGCTCAAAGACGGCGCCGATTGGCTCCACATGGACATCATGGATGGGGCATATCTGGATTGTCACCTTATGGTCACAAATCCTCTTGATTATGTTGAGCCGTTGGCAAAAGCCGGTGCTTCGGGTTTCACATTTCATGTTGAGGTATCCAAAGATAATTGGCAAGAGCTTGTTCAAAGGATCAAGTCCAAGGGCATGACACCAGGTGTGGCACTCAAGCCTGGAACTCCGATTGAAGAAGTTTTTCCCTTGGTGGAAGGTGAAATTCATGTGGACATGGTCCTCGTTATGACTGTGGAACCTGGATTTGGTGGACAGAAGTTCATGCCAGAAACAATGGATAAGGTTCGCACACTGAGAAAGAAGTATCCTTCACTAGATATAGAGGTAGATGGTGGGTTAGGGCCTTCAACCATTGACATTGCAGCTTCAGCCGGAGCAAATTGCATAGTTGCTGGAAGTTCAGTGTTTGGTGCCCCTGAACCTGCCAAAGTAATATCCGTCTTGAGAACTAGTGTTGAGGAATCTCAGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

204

Amino Acids

21.87

Weight (kDa)

5.11

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	6 - 44	5.3e-10	Ribulose-phosphate 3 epimerase family
Ribul_P_3_epim	PF00834	43 - 182	1.6e-44	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	2 cut(s)	89, 548
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	2 cut(s)	59, 90
AdeI	CACNNNGTG	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	251, 311, 486
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	3 cut(s)	277, 295, 376
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	2 cut(s)	244, 503
AluI	AGCT	2 cut(s)	244, 503
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	66, 479
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	67, 355, 479
AsuHPI	GGTGA	2 cut(s)	131, 347
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	2 cut(s)	89, 548
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	3 cut(s)	78, 113, 461
BceAI	ACGGC	2 cut(s)	103, 160
BciT130I	CCWGG	3 cut(s)	279, 297, 378
BciVI	GTATCC	2 cut(s)	232, 453
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	2 cut(s)	452, 588
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	568
BfuI	GTATCC	2 cut(s)	232, 453
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	12, 501
BlsI	GCNGC	2 cut(s)	13, 502
Bme1390I	CCNGG	3 cut(s)	279, 297, 378
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	67, 355, 479
BmiI	GGNNCC	4 cut(s)	91, 101, 375, 550
BmrFI	CCNGG	3 cut(s)	279, 297, 378
BmsI	GCATC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	275, 601
BsaHI	GRCGYC	2 cut(s)	59, 90
BsaJI	CCNNGG	2 cut(s)	264, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	495
BseBI	CCWGG	3 cut(s)	279, 297, 378
BseDI	CCNNGG	2 cut(s)	264, 324
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	512
BshFI	GGCC	2 cut(s)	68, 481
BshNI	GGYRCC	2 cut(s)	89, 548
BsiSI	CCGG	2 cut(s)	189, 510
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	68, 481
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	68, 481
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	4 cut(s)	91, 101, 375, 550
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	89, 548
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	264, 324
BssMI	GATC	1 cut(s)	255
BssNI	GRCGYC	2 cut(s)	59, 90
BssT1I	CCWWGG	2 cut(s)	264, 324
Bst2UI	CCWGG	3 cut(s)	279, 297, 378
Bst4CI	ACNGT	2 cut(s)	27, 370
BstACI	GRCGYC	2 cut(s)	59, 90
BstDEI	CTNAG	2 cut(s)	431, 603
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 506
BstNI	CCWGG	3 cut(s)	279, 297, 378
BstSCI	CCNGG	3 cut(s)	277, 295, 376
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	512
BsuI	GTATCC	2 cut(s)	232, 453
BsuRI	GGCC	2 cut(s)	68, 481
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	428, 546
BveI	ACCTGC	1 cut(s)	568
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	67, 355, 479
CseI	GACGC	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	277
CviAII	CATG	7 cut(s)	106, 115, 212, 271, 344, 352, 400
CviJI	RGCY	9 cut(s)	68, 100, 175, 188, 244, 295, 481, 503, 509
CviKI_1	RGCY	9 cut(s)	68, 100, 175, 188, 244, 295, 481, 503, 509
DdeI	CTNAG	2 cut(s)	431, 603
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
DraIII	CACNNNGTG	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	264, 324
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	277, 295, 376
EcoT14I	CCWWGG	2 cut(s)	264, 324
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	264, 324
FaeI	CATG	7 cut(s)	109, 118, 215, 274, 347, 355, 403
FatI	CATG	7 cut(s)	105, 114, 211, 270, 343, 351, 399
Fnu4HI	GCNGC	2 cut(s)	12, 501
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	12, 501
FspBI	CTAG	2 cut(s)	452, 588
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	12, 501
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	68, 481
HapII	CCGG	2 cut(s)	189, 510
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	2 cut(s)	59, 90
Hin1II	CATG	7 cut(s)	109, 118, 215, 274, 347, 355, 403
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	189, 510
HphI	GGTGA	2 cut(s)	131, 347
Hpy166II	GTNNAC	2 cut(s)	349, 389
Hpy188I	TCNGA	4 cut(s)	43, 64, 306, 606
Hpy188III	TCNNGA	3 cut(s)	131, 161, 580
Hpy8I	GTNNAC	2 cut(s)	349, 389
Hpy99I	CGWCG	3 cut(s)	31, 43, 64
HpyAV	CCTTC	3 cut(s)	326, 456, 492
HpyCH4III	ACNGT	2 cut(s)	27, 370
HpyCH4V	TGCA	2 cut(s)	500, 522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 506
HpyF3I	CTNAG	2 cut(s)	431, 603
Hsp92I	GRCGYC	2 cut(s)	59, 90
Hsp92II	CATG	7 cut(s)	109, 118, 215, 274, 347, 355, 403
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	105, 512
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	1 cut(s)	21
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	2 cut(s)	452, 588
MaeIII	GTNAC	2 cut(s)	137, 148
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	4 cut(s)	52, 232, 339, 517
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	21, 42
MnlI	CCTC	6 cut(s)	58, 168, 211, 368, 454, 589
MroXI	GAANNNNTTC	1 cut(s)	318
MspI	CCGG	2 cut(s)	189, 510
MspR9I	CCNGG	3 cut(s)	279, 297, 378
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	3 cut(s)	279, 297, 378
MwoI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 506
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	7 cut(s)	109, 118, 215, 274, 347, 355, 403
NlaIV	GGNNCC	4 cut(s)	91, 101, 375, 550
NmuCI	GTSAC	2 cut(s)	137, 148
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	599
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	13, 502
PluTI	GGCGCC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	277, 295, 376
PspGI	CCWGG	3 cut(s)	277, 295, 376
PspN4I	GGNNCC	4 cut(s)	91, 101, 375, 550
PspPI	GGNCC	3 cut(s)	67, 355, 479
PsyI	GACNNNGTC	1 cut(s)	353
SatI	GCNGC	2 cut(s)	12, 501
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	3 cut(s)	67, 355, 479
ScrFI	CCNGG	3 cut(s)	279, 297, 378
SduI	GDGCHC	1 cut(s)	553
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	290, 580
SmoI	CTYRAG	2 cut(s)	290, 580
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	4 cut(s)	52, 232, 339, 517
SsiI	CCGC	1 cut(s)	11
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	452, 588
StyD4I	CCNGG	3 cut(s)	277, 295, 376
StyI	CCWWGG	2 cut(s)	264, 324
TaaI	ACNGT	2 cut(s)	27, 370
TaqI	TCGA	2 cut(s)	29, 73
TasI	AATT	4 cut(s)	52, 232, 339, 517
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	599
TscAI	CASTG	2 cut(s)	435, 546
TseFI	GTSAC	2 cut(s)	137, 148
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	137, 148
TspDTI	ATGAA	3 cut(s)	200, 332, 388
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	2 cut(s)	435, 546
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	2 cut(s)	452, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.