Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

299784 .. 302397

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAGGCCAATCGGATGATCGATTTGGGCGCCAACTGGCTTCACATGGATATTATGGACGGGCATTTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAAGCACACTAATGCATATCTTGATTGCCACCTTATGGTGACGAACCCCATGGATTACGTTGCACAGATGGCTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAACAACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTGTGATGACTGTAGAACCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGGTCCGGGCATTGAGGCAAAAATACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGCCCTTCAACGATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCAGTGTTTGGAGCTCCGGAGCCAGGAGATGTCATCTCCCTTCTGAGGACCAGTGTTGAGAAAGCCCAACCCACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

225

Amino Acids

24.04

Weight (kDa)

5.15

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	5 - 202	1e-69	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	86, 572
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	323
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	4 cut(s)	56, 59, 531, 560
AcyI	GRCGYC	2 cut(s)	87, 573
AfiI	CCNNNNNNNGG	5 cut(s)	205, 277, 443, 620, 642
AgsI	TTSAA	4 cut(s)	371, 392, 410, 546
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	4 cut(s)	337, 355, 436, 619
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	2 cut(s)	248, 611
AluI	AGCT	2 cut(s)	248, 611
Alw21I	GWGCWC	2 cut(s)	151, 613
Alw26I	GTCTC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	4 cut(s)	63, 282, 448, 538
ApeKI	GCWGC	2 cut(s)	563, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	2 cut(s)	89, 575
AspS9I	GGNCC	4 cut(s)	283, 481, 539, 645
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	481, 645
BanI	GGYRCC	2 cut(s)	86, 572
BanII	GRGCYC	1 cut(s)	613
Bbv12I	GWGCWC	2 cut(s)	151, 613
BbvI	GCAGC	2 cut(s)	550, 578
BccI	CCATC	3 cut(s)	232, 466, 521
BciT130I	CCWGG	4 cut(s)	339, 357, 438, 621
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	2 cut(s)	429, 564
BfoI	RGCGCY	2 cut(s)	90, 576
BisI	GCNGC	5 cut(s)	57, 532, 561, 564, 567
BlsI	GCNGC	5 cut(s)	58, 533, 562, 565, 568
Bme1390I	CCNGG	5 cut(s)	339, 357, 438, 485, 621
Bme18I	GGWCC	2 cut(s)	481, 645
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	4 cut(s)	283, 481, 539, 645
BmiI	GGNNCC	3 cut(s)	88, 574, 618
BmrFI	CCNGG	5 cut(s)	339, 357, 438, 485, 621
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	78
BsaHI	GRCGYC	2 cut(s)	87, 573
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	2 cut(s)	403, 613
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 277, 443, 620, 642
Bse1I	ACTGG	3 cut(s)	98, 331, 648
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	4 cut(s)	339, 357, 438, 621
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	3 cut(s)	78, 336, 532
BseLI	CCNNNNNNNGG	5 cut(s)	205, 277, 443, 620, 642
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	3 cut(s)	98, 331, 648
BseXI	GCAGC	2 cut(s)	550, 578
BseYI	CCCAGC	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	4 cut(s)	65, 284, 450, 540
BshNI	GGYRCC	2 cut(s)	86, 572
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	552
BsiHKAI	GWGCWC	2 cut(s)	151, 613
BsiSI	CCGG	3 cut(s)	404, 484, 614
BslFI	GGGAC	2 cut(s)	113, 409
BslI	CCNNNNNNNGG	5 cut(s)	205, 277, 443, 620, 642
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	113, 409
BsnI	GGCC	4 cut(s)	65, 284, 450, 540
Bso31I	GGTCTC	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	151, 613
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	75, 549
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	4 cut(s)	56, 59, 531, 560
BspANI	GGCC	4 cut(s)	65, 284, 450, 540
BspCNI	CTCAG	1 cut(s)	633
BspDI	ATCGAT	1 cut(s)	78
BspEI	TCCGGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	88, 574, 618
BspMAI	CTGCAG	1 cut(s)	568
BspT107I	GGYRCC	2 cut(s)	86, 572
BspTNI	GGTCTC	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	98, 331, 648
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	75, 549
BssNI	GRCGYC	2 cut(s)	87, 573
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	4 cut(s)	339, 357, 438, 621
Bst4CI	ACNGT	3 cut(s)	24, 430, 581
BstACI	GRCGYC	2 cut(s)	87, 573
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	535, 641
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	78, 336, 532
BstH2I	RGCGCY	2 cut(s)	90, 576
BstHHI	GCGC	2 cut(s)	89, 575
BstKTI	GATC	2 cut(s)	78, 552
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	2 cut(s)	75, 549
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 62, 239, 537, 566, 572
BstNI	CCWGG	4 cut(s)	339, 357, 438, 621
BstSCI	CCNGG	5 cut(s)	337, 355, 436, 483, 619
BstSFI	CTRYAG	2 cut(s)	429, 564
BstV1I	GCAGC	2 cut(s)	550, 578
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	65, 284, 450, 540
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	78, 336, 532
BtsIMutI	CAGTG	2 cut(s)	606, 655
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	2 cut(s)	89, 575
Cfr13I	GGNCC	4 cut(s)	283, 481, 539, 645
ClaI	ATCGAT	1 cut(s)	78
CviAII	CATG	3 cut(s)	103, 220, 469
DdeI	CTNAG	2 cut(s)	535, 641
DinI	GGCGCC	2 cut(s)	88, 574
DpnI	GATC	2 cut(s)	77, 551
DpnII	GATC	2 cut(s)	75, 549
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	481, 645
Eco53kI	GAGCTC	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRII	CCWGG	4 cut(s)	337, 355, 436, 619
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	613
EgeI	GGCGCC	2 cut(s)	88, 574
EheI	GGCGCC	2 cut(s)	88, 574
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	106, 223, 472
FaiI	YATR	7 cut(s)	104, 113, 187, 206, 221, 461, 470
FaqI	GGGAC	2 cut(s)	113, 409
FatI	CATG	3 cut(s)	102, 219, 468
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	5 cut(s)	57, 532, 561, 564, 567
FokI	GGATG	3 cut(s)	85, 343, 539
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	5 cut(s)	57, 532, 561, 564, 567
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	88, 574
GluI	GCNGC	5 cut(s)	57, 532, 561, 564, 567
GsaI	CCCAGC	1 cut(s)	252
HaeII	RGCGCY	2 cut(s)	90, 576
HaeIII	GGCC	4 cut(s)	65, 284, 450, 540
HapII	CCGG	3 cut(s)	404, 484, 614
HhaI	GCGC	2 cut(s)	89, 575
Hin1I	GRCGYC	2 cut(s)	87, 573
Hin1II	CATG	3 cut(s)	106, 223, 472
Hin6I	GCGC	2 cut(s)	87, 573
HinP1I	GCGC	2 cut(s)	87, 573
HpaII	CCGG	3 cut(s)	404, 484, 614
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	3 cut(s)	40, 72, 642
Hpy188III	TCNNGA	4 cut(s)	160, 191, 310, 614
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	2 cut(s)	28, 278
HpyAV	CCTTC	3 cut(s)	386, 552, 647
HpyCH4III	ACNGT	3 cut(s)	24, 430, 581
HpyCH4IV	ACGT	2 cut(s)	228, 273
HpyCH4V	TGCA	3 cut(s)	185, 233, 566
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 62, 239, 537, 566, 572
HpyF3I	CTNAG	2 cut(s)	535, 641
HpySE526I	ACGT	2 cut(s)	228, 273
Hsp92I	GRCGYC	2 cut(s)	87, 573
Hsp92II	CATG	3 cut(s)	106, 223, 472
HspAI	GCGC	2 cut(s)	87, 573
KasI	GGCGCC	2 cut(s)	86, 572
Kpn2I	TCCGGA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	75, 549
LmnI	GCTCC	4 cut(s)	154, 608, 616, 616
Lsp1109I	GCAGC	2 cut(s)	550, 578
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	228, 273
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	77, 551
MboI	GATC	2 cut(s)	75, 549
MboII	GAAGA	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	151, 613
MluCI	AATT	1 cut(s)	292
Mly113I	GGCGCC	2 cut(s)	87, 573
MnlI	CCTC	6 cut(s)	55, 271, 393, 440, 486, 636
Mph1103I	ATGCAT	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	3 cut(s)	404, 484, 614
MspR9I	CCNGG	5 cut(s)	339, 357, 438, 485, 621
MvaI	CCWGG	4 cut(s)	339, 357, 438, 621
MwoI	GCNNNNNNNGC	6 cut(s)	53, 62, 239, 537, 566, 572
NarI	GGCGCC	2 cut(s)	87, 573
NciI	CCSGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	75, 549
NlaIII	CATG	3 cut(s)	106, 223, 472
NlaIV	GGNNCC	3 cut(s)	88, 574, 618
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	5 cut(s)	58, 533, 562, 565, 568
Ple19I	CGATCG	1 cut(s)	552
PluTI	GGCGCC	2 cut(s)	90, 576
Psp124BI	GAGCTC	1 cut(s)	613
Psp6I	CCWGG	4 cut(s)	337, 355, 436, 619
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	4 cut(s)	337, 355, 436, 619
PspN4I	GGNNCC	3 cut(s)	88, 574, 618
PspPI	GGNCC	4 cut(s)	283, 481, 539, 645
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	563
PsyI	GACNNNGTC	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	613
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	5 cut(s)	57, 532, 561, 564, 567
Sau3AI	GATC	2 cut(s)	75, 549
Sau96I	GGNCC	4 cut(s)	283, 481, 539, 645
ScrFI	CCNGG	5 cut(s)	339, 357, 438, 485, 621
SduI	GDGCHC	2 cut(s)	151, 613
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	2 cut(s)	429, 564
SfoI	GGCGCC	2 cut(s)	88, 574
SinI	GGWCC	2 cut(s)	481, 645
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	4 cut(s)	56, 59, 531, 560
SspDI	GGCGCC	2 cut(s)	86, 572
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	613
StyD4I	CCNGG	5 cut(s)	337, 355, 436, 483, 619
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	24, 430, 581
TaiI	ACGT	2 cut(s)	231, 276
TaqI	TCGA	6 cut(s)	26, 78, 159, 276, 309, 552
TasI	AATT	1 cut(s)	292
TauI	GCSGC	3 cut(s)	59, 534, 563
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	606, 655
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	563, 566
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	2 cut(s)	606, 655
Tth111I	GACNNNGTC	1 cut(s)	479
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	481, 645
XmiI	GTMKAC	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.