Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006697

Physical Location & Seq

Genomic Coordinates Reverse (-)

82487967 .. 82489639

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTGTGGCGGCGAAAATAGCACCGTCGATGCTGTCGTCGGACTTTGCCAATTTGGCGTCGGAGGCCCATCGAATGCTCAAAGACGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTTCCGAATCTGACACTTGGTGCTCCGGTAATTCAGAGTTTGAGAAAGCATACAGAGGCATATCTGGATTGCCACCTTATGGTCACAAATCCTCTTGATTATGTTGAGCCGTTGGCAAAAGCCGGTGCTTCGGGTTTCACATTTCATGTTGAGGTATCCAAAGATAATTGGCAAGAGCTTGTTCAAAGGATCAAGTCCAAGGGCATGACACCAGGTGTGGCACTCAAGCCTGGAACTCCGATTGAAGAAGTTTTTCCTCTGGTGGAAGGTGAAATTCATGTGGACATGGTCCTTGTTATGACTGTGGAACCTGGATTTGGTGGACAGAAGTTCATGCCAGAAACGATGGATAAGGTTCGCACACTGAGAAAGAAGTATCCTTCACTAGATATAGAGGTAGATGGTGGCTTAGGGCCTTCAACCATTGACATTGCAGCTTCAGCTGGAGCAAACTGCATAGTTGCTGGAAGCTCAGTGTTTGGTGCCCCCGAACCTGCCAAAGTAATATCCGTCTTGAGAACTAGTGTTGAGGAATCTCAGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009052 GO:0009056 GO:0009117 GO:0009987 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019323 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046365 GO:0046483 GO:0046496 GO:0046872 GO:0051156 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

226

Amino Acids

24.21

Weight (kDa)

5.49

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribul_P_3_epim	PF00834	6 - 203	2.2e-71	Ribulose-phosphate 3 epimerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63290 AT3G01850 AT3G01850 AT3G01850 AT3G01850
fragaria_vesca	FvH4_6g53180 FvH4_6g53180 FvH4_6g53180 FvH4_6g53180
malus_domestica	MD09G1013300.v1.1 MD17G1014000.v1.1
prunus_persica	Prupe.3G303800_v2.0.a1
pyrus_communis	pycom111g01130 pycom17g01110
rosa_chinensis	RchiOBHm_Chr2g0175221
rosa_laevigata	RLG00000022312
rosa_multiflora	Rmu_sc0003920.1_g000021 Rmu_sc0010642.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077480
rosa_rugosa	Rorug02G0581600 Rorug02G0581700
rosa_samantha	Rh2AG662200 Rh2BG673400 Rh2CG636600 Rh2DG687300
rosa_wichuraiana	Rw2G054310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	2 cut(s)	89, 611
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	2 cut(s)	59, 90
AdeI	CACNNNGTG	2 cut(s)	149, 344
AfiI	CCNNNNNNNGG	2 cut(s)	208, 446
AgsI	TTSAA	3 cut(s)	314, 374, 549
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	3 cut(s)	340, 358, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	4 cut(s)	307, 566, 572, 600
AluI	AGCT	4 cut(s)	307, 566, 572, 600
Alw21I	GWGCWC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	66, 542
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	67, 418, 542
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	2 cut(s)	89, 611
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	4 cut(s)	78, 113, 469, 524
BceAI	ACGGC	2 cut(s)	103, 223
BciT130I	CCWGG	3 cut(s)	342, 360, 441
BciVI	GTATCC	2 cut(s)	295, 516
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	2 cut(s)	515, 651
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	631
BfuI	GTATCC	2 cut(s)	295, 516
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	12, 564
BlsI	GCNGC	2 cut(s)	13, 565
Bme1390I	CCNGG	3 cut(s)	342, 360, 441
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	67, 418, 542
BmiI	GGNNCC	4 cut(s)	91, 101, 438, 613
BmrFI	CCNGG	3 cut(s)	342, 360, 441
BmsI	GCATC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	2 cut(s)	338, 664
BsaHI	GRCGYC	2 cut(s)	59, 90
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 446
Bse118I	RCCGGY	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	3 cut(s)	342, 360, 441
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	208, 446
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	485, 615
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	2 cut(s)	68, 544
BshNI	GGYRCC	2 cut(s)	89, 611
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	155, 252
BslI	CCNNNNNNNGG	2 cut(s)	208, 446
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	68, 544
Bsp1286I	GDGCHC	2 cut(s)	154, 616
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	68, 544
BspCNI	CTCAG	2 cut(s)	486, 614
BspLI	GGNNCC	4 cut(s)	91, 101, 438, 613
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	89, 611
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	2 cut(s)	59, 90
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	3 cut(s)	342, 360, 441
Bst4CI	ACNGT	2 cut(s)	27, 433
BstACI	GRCGYC	2 cut(s)	59, 90
BstDEI	CTNAG	4 cut(s)	494, 538, 601, 666
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
BstNI	CCWGG	3 cut(s)	342, 360, 441
BstSCI	CCNGG	3 cut(s)	340, 358, 439
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	575
BsuI	GTATCC	2 cut(s)	295, 516
BsuRI	GGCC	2 cut(s)	68, 544
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	491, 609
BveI	ACCTGC	1 cut(s)	631
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	3 cut(s)	67, 418, 542
CseI	GACGC	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	340
CviAII	CATG	7 cut(s)	106, 115, 275, 334, 407, 415, 463
DdeI	CTNAG	4 cut(s)	494, 538, 601, 666
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraIII	CACNNNGTG	2 cut(s)	149, 344
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	3 cut(s)	340, 358, 439
EcoT14I	CCWWGG	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	7 cut(s)	109, 118, 278, 337, 410, 418, 466
FatI	CATG	7 cut(s)	105, 114, 274, 333, 406, 414, 462
Fnu4HI	GCNGC	2 cut(s)	12, 564
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	12, 564
FspBI	CTAG	2 cut(s)	515, 651
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	12, 564
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	68, 544
HapII	CCGG	2 cut(s)	155, 252
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	2 cut(s)	59, 90
Hin1II	CATG	7 cut(s)	109, 118, 278, 337, 410, 418, 466
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	136, 662
HpaII	CCGG	2 cut(s)	155, 252
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	412, 452
Hpy188I	TCNGA	7 cut(s)	43, 64, 135, 141, 165, 369, 669
Hpy188III	TCNNGA	3 cut(s)	194, 224, 643
Hpy8I	GTNNAC	2 cut(s)	412, 452
Hpy99I	CGWCG	3 cut(s)	31, 43, 64
HpyAV	CCTTC	3 cut(s)	389, 519, 555
HpyCH4III	ACNGT	2 cut(s)	27, 433
HpyCH4V	TGCA	2 cut(s)	563, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
HpyF3I	CTNAG	4 cut(s)	494, 538, 601, 666
Hsp92I	GRCGYC	2 cut(s)	59, 90
Hsp92II	CATG	7 cut(s)	109, 118, 278, 337, 410, 418, 466
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	3 cut(s)	105, 157, 575
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	21
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	2 cut(s)	515, 651
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	154, 616
MluCI	AATT	4 cut(s)	52, 159, 295, 402
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	21, 42
MnlI	CCTC	7 cut(s)	58, 178, 231, 274, 396, 517, 652
MroXI	GAANNNNTTC	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	155, 252
MspR9I	CCNGG	3 cut(s)	342, 360, 441
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	3 cut(s)	342, 360, 441
MwoI	GCNNNNNNNGC	4 cut(s)	20, 56, 65, 569
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	7 cut(s)	109, 118, 278, 337, 410, 418, 466
NlaIV	GGNNCC	4 cut(s)	91, 101, 438, 613
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	136, 662
PflFI	GACNNNGTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	13, 565
PluTI	GGCGCC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	340, 358, 439
PspGI	CCWGG	3 cut(s)	340, 358, 439
PspN4I	GGNNCC	4 cut(s)	91, 101, 438, 613
PspPI	GGNCC	3 cut(s)	67, 418, 542
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	572
SatI	GCNGC	2 cut(s)	12, 564
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	3 cut(s)	67, 418, 542
ScrFI	CCNGG	3 cut(s)	342, 360, 441
SduI	GDGCHC	2 cut(s)	154, 616
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	353, 643
SmoI	CTYRAG	2 cut(s)	353, 643
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	4 cut(s)	52, 159, 295, 402
SsiI	CCGC	1 cut(s)	11
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	515, 651
StyD4I	CCNGG	3 cut(s)	340, 358, 439
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	27, 433
TaqI	TCGA	2 cut(s)	29, 73
TasI	AATT	4 cut(s)	52, 159, 295, 402
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	136, 662
TscAI	CASTG	2 cut(s)	498, 609
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	263, 395, 451
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	2 cut(s)	498, 609
Tth111I	GACNNNGTC	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	515, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.