Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012159

Physical Location & Seq

Genomic Coordinates Reverse (-)

23682278 .. 23684373

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGATTCTGATCTTTATATCTTTGATGGGTCTTCATCTTCTTCCTCAATCTGCCACAGTACTGATCCTGATATGTTTTCCTCCGACACAACAACAACAACAGATCTCTACTGCAACAATCCTTATCTCAATCCTTCAATGGATGATCATCAATCTCTTAGTTTCTTTGAAAGTTTTACTCCGACGACTCATCATATCCTCTCTTCTTCTCCTCCAATCTCTCAGCTCCAGACCTTAACTCTCACACACACAAACAGTTTCCCCAACTTCTCCGGTTTCGAAAACTTCGACACTGTCAAAACAGAGCAGCTCTTGTTTAACTCTCCCTTTGATGCTCCATTCATGGAAGATTCCTCGAATTTTCAGAATCAGAATTTGTTAAACTCGCCGGAAGATTCCTTCTTCTCCGATCACATGCGACGAGTTTACAGCACCGGAGATTTGCAGAATTTAGGAAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCACCAACGACGGTGTTTTCCGGCGATGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAACGTAAAGAGAAGATTTCTAAGTATAGAGCTAAACGAACACAGAGAAACTTCACCAAAACCATTAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTGCAAGAAACGACGAAGTGTTTGAGAACCCCAAGATTGCTTCTTCTTTCACTAGACAAGAAAACGACGACGACCTTTGGAATTTGGATGGGCTGCATGAGGAAGAAGAAGCTTGTGTGAACTTAGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCCTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

293

Amino Acids

33.62

Weight (kDa)

4.84

Isoelectric Point (pI)

64.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	192 - 234	4.4e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63820 AT5G41380
fragaria_vesca	FvH4_1g29660 FvH4_5g02850
malus_domestica	MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica	Prupe.5G104100_v2.0.a1
pyrus_communis	pycom06g08410
rosa_chinensis	RchiOBHm_Chr7g0197051
rosa_laevigata	RLG00000003963
rosa_multiflora	Rmu_sc0003411.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258700
rosa_rugosa	Rorug07G0037300
rosa_samantha	Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana	Rw7G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	497, 500, 662
AclI	AACGTT	1 cut(s)	656
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	5 cut(s)	358, 373, 448, 772, 868
AfaI	GTAC	2 cut(s)	61, 681
AgsI	TTSAA	2 cut(s)	138, 170
AluBI	AGCT	5 cut(s)	226, 310, 543, 602, 803
AluI	AGCT	5 cut(s)	226, 310, 543, 602, 803
Alw26I	GTCTC	2 cut(s)	834, 840
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	307, 784
ApoI	RAATTY	5 cut(s)	358, 373, 448, 772, 868
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AsuHPI	GGTGA	2 cut(s)	501, 616
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	484
BarI	GAAGNNNNNNTAC	2 cut(s)	448, 480
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	319, 771
BccI	CCATC	2 cut(s)	20, 773
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	834, 840
BfaI	CTAG	1 cut(s)	744
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	3 cut(s)	308, 498, 785
BlsI	GCNGC	3 cut(s)	309, 499, 786
BmcAI	AGTACT	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	565
BsaAI	YACGTR	1 cut(s)	683
BsaBI	GATNNNNATC	2 cut(s)	9, 147
BsaWI	WCCGGW	2 cut(s)	272, 434
Bse1I	ACTGG	1 cut(s)	881
Bse8I	GATNNNNATC	2 cut(s)	9, 147
BseGI	GGATG	2 cut(s)	148, 784
BseJI	GATNNNNATC	2 cut(s)	9, 147
BseMII	CTCAG	4 cut(s)	236, 845, 851, 857
BseNI	ACTGG	1 cut(s)	881
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	319, 771
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	5 cut(s)	273, 389, 435, 528, 649
BslFI	GGGAC	1 cut(s)	483
BsmAI	GTCTC	2 cut(s)	834, 840
BsmFI	GGGAC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
BspACI	CCGC	3 cut(s)	497, 500, 662
BspCNI	CTCAG	4 cut(s)	235, 844, 850, 856
BspPI	GGATC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	881
BssMI	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
Bst4CI	ACNGT	5 cut(s)	59, 257, 295, 520, 563
Bst6I	CTCTTC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	683
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	7 cut(s)	158, 222, 591, 814, 831, 837, 843
BstF5I	GGATG	2 cut(s)	148, 784
BstKTI	GATC	6 cut(s)	13, 67, 106, 148, 412, 479
BstMAI	GTCTC	2 cut(s)	834, 840
BstMBI	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
BstMWI	GCNNNNNNNGC	1 cut(s)	847
BstNSI	RCATGY	2 cut(s)	418, 648
BstV1I	GCAGC	2 cut(s)	319, 771
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	148, 784
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	60, 680
CviAII	CATG	5 cut(s)	343, 415, 645, 788, 862
CviJI	RGCY	7 cut(s)	226, 310, 543, 602, 784, 803, 841
CviKI_1	RGCY	7 cut(s)	226, 310, 543, 602, 784, 803, 841
CviQI	GTAC	2 cut(s)	60, 680
DdeI	CTNAG	7 cut(s)	158, 222, 591, 814, 831, 837, 843
DpnI	GATC	6 cut(s)	12, 66, 105, 147, 411, 478
DpnII	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EciI	GGCGGA	2 cut(s)	515, 677
Eco88I	CYCGRG	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	646
FaeI	CATG	5 cut(s)	346, 418, 648, 791, 865
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	5 cut(s)	342, 414, 644, 787, 861
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	308, 498, 785
FokI	GGATG	2 cut(s)	155, 791
Fsp4HI	GCNGC	3 cut(s)	308, 498, 785
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	3 cut(s)	308, 498, 785
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	5 cut(s)	273, 389, 435, 528, 649
Hin1II	CATG	5 cut(s)	346, 418, 648, 791, 865
HindIII	AAGCTT	2 cut(s)	541, 801
HinfI	GANTC	6 cut(s)	5, 187, 350, 367, 395, 487
HpaII	CCGG	5 cut(s)	273, 389, 435, 528, 649
HphI	GGTGA	2 cut(s)	501, 616
Hpy166II	GTNNAC	3 cut(s)	427, 509, 811
Hpy188I	TCNGA	7 cut(s)	10, 85, 183, 366, 372, 409, 568
Hpy188III	TCNNGA	2 cut(s)	68, 229
Hpy8I	GTNNAC	3 cut(s)	427, 509, 811
Hpy99I	CGWCG	6 cut(s)	187, 423, 520, 707, 761, 764
HpyAV	CCTTC	3 cut(s)	144, 409, 450
HpyCH4III	ACNGT	5 cut(s)	59, 257, 295, 520, 563
HpyCH4IV	ACGT	3 cut(s)	574, 656, 682
HpyCH4V	TGCA	7 cut(s)	114, 445, 644, 695, 787, 850, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	847
HpyF3I	CTNAG	7 cut(s)	158, 222, 591, 814, 831, 837, 843
HpySE526I	ACGT	3 cut(s)	574, 656, 682
Hsp92II	CATG	5 cut(s)	346, 418, 648, 791, 865
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
LmnI	GCTCC	2 cut(s)	231, 340
LpnPI	CCDG	8 cut(s)	81, 242, 286, 402, 448, 541, 662, 862
Lsp1109I	GCAGC	2 cut(s)	319, 771
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	3 cut(s)	574, 656, 682
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	6 cut(s)	12, 66, 105, 147, 411, 478
MboI	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	5 cut(s)	358, 373, 448, 772, 868
MlyI	GAGTC	2 cut(s)	181, 496
MmeI	TCCRAC	2 cut(s)	108, 206
MnlI	CCTC	8 cut(s)	55, 91, 209, 222, 364, 540, 784, 852
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	4 cut(s)	236, 318, 380, 636
MspI	CCGG	5 cut(s)	273, 389, 435, 528, 649
MwoI	GCNNNNNNNGC	1 cut(s)	847
NdeII	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
NlaIII	CATG	5 cut(s)	346, 418, 648, 791, 865
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	2 cut(s)	418, 648
NspV	TTCGAA	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	648
PaeR7I	CTCGAG	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	5, 350, 367, 395
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	309, 499, 786
PleI	GAGTC	2 cut(s)	181, 495
PpsI	GAGTC	2 cut(s)	181, 495
Ppu21I	YACGTR	1 cut(s)	683
Psp1406I	AACGTT	1 cut(s)	656
PspXI	VCTCGAGB	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	61, 681
RsaNI	GTAC	2 cut(s)	60, 680
SaqAI	TTAA	4 cut(s)	236, 318, 380, 636
SatI	GCNGC	3 cut(s)	308, 498, 785
Sau3AI	GATC	6 cut(s)	10, 64, 103, 145, 409, 476
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	2 cut(s)	181, 496
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	484
SmlI	CTYRAG	2 cut(s)	484, 544
SmoI	CTYRAG	2 cut(s)	484, 544
SphI	GCATGC	1 cut(s)	648
Sse9I	AATT	5 cut(s)	358, 373, 448, 772, 868
SsiI	CCGC	3 cut(s)	497, 500, 662
SspMI	CTAG	1 cut(s)	744
TaaI	ACNGT	5 cut(s)	59, 257, 295, 520, 563
TaiI	ACGT	3 cut(s)	577, 659, 685
TaqI	TCGA	4 cut(s)	279, 288, 356, 485
TasI	AATT	5 cut(s)	358, 373, 448, 772, 868
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	4 cut(s)	5, 350, 367, 395
Tru1I	TTAA	4 cut(s)	236, 318, 380, 636
Tru9I	TTAA	4 cut(s)	236, 318, 380, 636
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	307, 784
TspDTI	ATGAA	3 cut(s)	24, 331, 549
TspRI	CASTG	1 cut(s)	298
Tth111I	GACNNNGTC	1 cut(s)	293
XapI	RAATTY	5 cut(s)	358, 373, 448, 772, 868
XceI	RCATGY	2 cut(s)	418, 648
XhoI	CTCGAG	1 cut(s)	484
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.