Rh7BG164300

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012159
Physical Location & Seq
Forward (+)
12733975 .. 12736221
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG164300.1

Sequence Viewer

Length: 888 bp
ATGTCTTCTGATCTCTTTGTTGACGATGCCTCCTTGTACCGCCATTCCTATGAAACAGACCTCTTGTCTGACCCCTTCTCTCCTTTCTCAGACTCAGCTCTTGACATCCTTCAAGCAATCTCTGACCACCGAAACGTACAAAACCCAGTTGAGGATCAGCCTCATTCTTTTGAGCAAAGCTCCCCAAATCCTGTTTCTTCTTCACCCCCAAGTTATCAATCGGGAAGTTTGAGCCTTTACCAAGCAACCCATCTGGGCCCTCTTGAAAATGGTCCCAGTTTGGGAGATGCCTTGGGAAATTTCTCAGCTTTGGACATTTTAGGGGAGGTGAAAACTGAGCAATGTCATGTGGGTTTTGACCAGAATGCTCATAATTACAACACCCAACACGCTTTTTCTCCTCACAGTTACAGTGGTGGTGCTGAAAATGTGGCCAAATTTATGCAGAGGAGCTATAGCAGCAACTCCTTTGACGGAAAGCCTGGCTTTGTTTTCCAACCTCGCTTCGATTCTCTCATGGAATCCCCAAATTTTCAGAACCAAGCAGCCTCCTTGACAAGTCAAATGAGAAGGGTTTCCAGCACTGGAGATTTACAAAATTTCAAAACTGCTCGTAATCCTCGAGAGAGCTCGGCCATGGAGGAAGCTGGGAGCTTCAAGATGGGGAAGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAGTACAGAGCTAAGAGATCACAGAGAAACTTCACCAAGACTATCAAGTATGCATGCCGAAAGACACTAGCAGACAACCGTCCACGCATACGTGGAAGATTTGCGCGAAATGATGAAACTGGTGAGATCCTCAAACCTGCATGTTCAACCAGAGAAGAGGACGAAGATGATCTCTGGGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

295

Amino Acids

33.07

Weight (kDa)

5.79

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 229 - 271 6.6e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 847
AccII CGCG 1 cut(s) 808
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 162, 823
AcoI YGGCCR 2 cut(s) 432, 633
AcsI RAATTY 4 cut(s) 298, 437, 529, 598
AfaI GTAC 4 cut(s) 38, 138, 671, 707
AfiI CCNNNNNNNGG 2 cut(s) 151, 281
AgsI TTSAA 6 cut(s) 113, 266, 604, 658, 702, 849
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 8 cut(s) 98, 180, 308, 453, 630, 647, 654, 713
AluI AGCT 8 cut(s) 98, 180, 308, 453, 630, 647, 654, 713
Alw21I GWGCWC 1 cut(s) 632
AlwI GGATC 2 cut(s) 162, 823
Ama87I CYCGRG 1 cut(s) 621
AoxI GGCC 3 cut(s) 256, 432, 633
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 459, 545
ApoI RAATTY 4 cut(s) 298, 437, 529, 598
Asp700I GAANNNNTTC 1 cut(s) 574
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 3 cut(s) 256, 257, 272
AsuHPI GGTGA 4 cut(s) 195, 340, 727, 836
AvaI CYCGRG 1 cut(s) 621
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 2 cut(s) 260, 632
Bbv12I GWGCWC 1 cut(s) 632
BbvI GCAGC 2 cut(s) 471, 557
BccI CCATC 2 cut(s) 258, 655
BciT130I CCWGG 1 cut(s) 483
BfaI CTAG 1 cut(s) 770
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 847
BisI GCNGC 2 cut(s) 460, 546
BlsI GCNGC 2 cut(s) 461, 547
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 621
BmgT120I GGNCC 3 cut(s) 256, 257, 272
BmiI GGNNCC 2 cut(s) 258, 274
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 140, 270
BmsI GCATC 2 cut(s) 16, 277
BmuI ACTGGG 2 cut(s) 140, 270
BoxI GACNNNNGTC 1 cut(s) 780
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 606
BsaAI YACGTR 1 cut(s) 794
BsaJI CCNNGG 2 cut(s) 291, 636
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 281
Bse1I ACTGG 4 cut(s) 146, 276, 589, 826
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 291, 636
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 151, 281
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 4 cut(s) 102, 108, 318, 327
BseNI ACTGG 4 cut(s) 146, 276, 589, 826
BseRI GAGGAG 3 cut(s) 390, 463, 695
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 2 cut(s) 471, 557
BseYI CCCAGC 1 cut(s) 647
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 808
BshFI GGCC 3 cut(s) 258, 434, 635
BsiHKAI GWGCWC 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 621
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 151, 281
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 3 cut(s) 258, 434, 635
BsoBI CYCGRG 1 cut(s) 621
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 260, 632
Bsp143I GATC 5 cut(s) 10, 154, 719, 828, 871
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 258, 434, 635
BspCNI CTCAG 4 cut(s) 101, 107, 317, 328
BspFNI CGCG 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 258, 274
BspMI ACCTGC 1 cut(s) 847
BspPI GGATC 2 cut(s) 162, 823
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 4 cut(s) 146, 276, 589, 826
BssECI CCNNGG 2 cut(s) 291, 636
BssMI GATC 5 cut(s) 10, 154, 719, 828, 871
BssT1I CCWWGG 2 cut(s) 291, 636
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 407, 413, 674, 782
Bst6I CTCTTC 1 cut(s) 852
BstBAI YACGTR 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 5 cut(s) 88, 94, 304, 336, 714
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 808
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 5 cut(s) 13, 157, 722, 831, 874
BstMBI GATC 5 cut(s) 10, 154, 719, 828, 871
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 2 cut(s) 759, 846
BstPAI GACNNNNGTC 1 cut(s) 780
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 808
BstV1I GCAGC 2 cut(s) 471, 557
BstX2I RGATCY 1 cut(s) 828
BstYI RGATCY 1 cut(s) 828
BsuRI GGCC 3 cut(s) 258, 434, 635
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 418, 582, 679
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 757
CfoI GCGC 1 cut(s) 808
Cfr13I GGNCC 3 cut(s) 256, 257, 272
Csp6I GTAC 4 cut(s) 37, 137, 670, 706
CviAII CATG 5 cut(s) 347, 517, 637, 756, 843
CviQI GTAC 4 cut(s) 37, 137, 670, 706
DdeI CTNAG 5 cut(s) 88, 94, 304, 336, 714
DpnI GATC 5 cut(s) 12, 156, 721, 830, 873
DpnII GATC 5 cut(s) 10, 154, 719, 828, 871
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 432, 633
Eam1104I CTCTTC 1 cut(s) 852
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 852
Ecl136II GAGCTC 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 291, 636
Eco24I GRGCYC 2 cut(s) 260, 632
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 291, 636
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 2 cut(s) 260, 632
ErhI CCWWGG 2 cut(s) 291, 636
FaeI CATG 5 cut(s) 350, 520, 640, 759, 846
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 258
FatI CATG 5 cut(s) 346, 516, 636, 755, 842
Fnu4HI GCNGC 2 cut(s) 460, 546
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 2 cut(s) 260, 632
Fsp4HI GCNGC 2 cut(s) 460, 546
FspBI CTAG 1 cut(s) 770
GlaI GCGC 1 cut(s) 807
GluI GCNGC 2 cut(s) 460, 546
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 3 cut(s) 258, 434, 635
HhaI GCGC 1 cut(s) 808
Hin1II CATG 5 cut(s) 350, 520, 640, 759, 846
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 92, 509, 521
HphI GGTGA 4 cut(s) 195, 340, 727, 836
Hpy166II GTNNAC 2 cut(s) 22, 785
Hpy188I TCNGA 5 cut(s) 10, 70, 91, 124, 537
Hpy188III TCNNGA 5 cut(s) 101, 222, 263, 623, 658
Hpy8I GTNNAC 2 cut(s) 22, 785
HpyAV CCTTC 3 cut(s) 85, 119, 564
HpyCH4III ACNGT 4 cut(s) 407, 413, 674, 782
HpyCH4IV ACGT 2 cut(s) 135, 793
HpyCH4V TGCA 4 cut(s) 445, 677, 755, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 5 cut(s) 88, 94, 304, 336, 714
HpySE526I ACGT 2 cut(s) 135, 793
Hsp92II CATG 5 cut(s) 350, 520, 640, 759, 846
HspAI GCGC 1 cut(s) 806
Kzo9I GATC 5 cut(s) 10, 154, 719, 828, 871
LmnI GCTCC 3 cut(s) 185, 450, 651
Lsp1109I GCAGC 2 cut(s) 471, 557
LweI GCATC 2 cut(s) 16, 277
MaeI CTAG 1 cut(s) 770
MaeII ACGT 2 cut(s) 135, 793
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 12, 156, 721, 830, 873
MboI GATC 5 cut(s) 10, 154, 719, 828, 871
MboII GAAGA 5 cut(s) 189, 192, 810, 869, 878
MflI RGATCY 1 cut(s) 828
MhlI GDGCHC 2 cut(s) 260, 632
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 6 cut(s) 298, 373, 437, 529, 598, 882
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 520
Mox20I TGGCCA 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 574
MscI TGGCCA 1 cut(s) 434
MseI TTAA 1 cut(s) 886
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 808
MwoI GCNNNNNNNGC 1 cut(s) 459
NcoI CCATGG 1 cut(s) 636
NdeII GATC 5 cut(s) 10, 154, 719, 828, 871
NlaIII CATG 5 cut(s) 350, 520, 640, 759, 846
NlaIV GGNNCC 2 cut(s) 258, 274
NmeAIII GCCGAG 1 cut(s) 611
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 2 cut(s) 759, 846
PaeI GCATGC 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 619
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 509, 521
PkrI GCNGC 2 cut(s) 461, 547
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 794
PshAI GACNNNNGTC 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 258, 274
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 256, 257, 272
PsuI RGATCY 1 cut(s) 828
RsaI GTAC 4 cut(s) 38, 138, 671, 707
RsaNI GTAC 4 cut(s) 37, 137, 670, 706
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 632
SaqAI TTAA 1 cut(s) 886
SatI GCNGC 2 cut(s) 460, 546
Sau3AI GATC 5 cut(s) 10, 154, 719, 828, 871
Sau96I GGNCC 3 cut(s) 256, 257, 272
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 260, 632
SfaNI GCATC 2 cut(s) 16, 277
SfcI CTRYAG 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 621
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
SphI GCATGC 1 cut(s) 759
Sse9I AATT 6 cut(s) 298, 373, 437, 529, 598, 882
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 770
SstI GAGCTC 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 291, 636
TaaI ACNGT 4 cut(s) 407, 413, 674, 782
TaiI ACGT 2 cut(s) 138, 796
TaqI TCGA 2 cut(s) 507, 622
TasI AATT 6 cut(s) 298, 373, 437, 529, 598, 882
TatI WGTACW 2 cut(s) 669, 705
TfiI GAWTC 2 cut(s) 509, 521
Tru1I TTAA 1 cut(s) 886
Tru9I TTAA 1 cut(s) 886
TscAI CASTG 3 cut(s) 418, 589, 679
TseI GCWGC 2 cut(s) 459, 545
TspDTI ATGAA 2 cut(s) 66, 831
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 3 cut(s) 418, 589, 679
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 4 cut(s) 298, 437, 529, 598
XceI RCATGY 2 cut(s) 759, 846
XhoI CTCGAG 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 1 cut(s) 770
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.