FvH4_1g29660

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012159
Physical Location & Seq
Reverse (-)
22946116 .. 22948208
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29660.t1

Sequence Viewer

Length: 1014 bp
ATGTCTTCTGATCTCTTTGTTGATGACAACTCCTTCTACCGCCATTCCTTTGAAGAAGACCACTTCTCTGACCCCTTCTCTCCTTTCTCAGACTCAGCCATTGATATACTCCAAGCATTATCAGACTCAAAGAACCTAGTTGGGGAGCAGCCTCATTCTCTTGAGCAAAGCTCTCGAAATCTTGTTTCTTCTTCACCCCCGAATTACCAATTGAAAAGTTTGAGCCTTTACCAAGCAACCCATTCGGTCCCTCTTGAAACTGATCCCTATTTGGGAAGTGCGTTAGAAAATTTCTCAGCTTTGGATAATTTGGAGGTGAAAACTGAGCAATGTAGTGGTGACCAGAATGCTTTTCTCTATAACAACCAAGGTCCCCAACAAACCTTTGCTCCTCATAGTTACAGAGGTGGTGATGAATTTGTGGCCAAGTATATGCAGAAGAACTACAGCAGCAACTTCTTTGATGGAAAGCCTAGTTTTGTTTTCCAACCTAGCTTTGATTCTCTCATGGAATCCCCAAGTTTTCAGACCCAAGCAGCCTCCTTGAGCTCACCTGAGAGTAGCTACTTGACTTGTCACATGAGGAGGAGGGTTTCCAGCACTGGAGATTTGCAAAATTTCACGACAACTCATAATCCTCGAGAGAGCTCGGCCATGGAAGACGCTGGGAACTTCAAAATGAGTAAGTACACTGCAGAGGAGAGGAAAGAGAGGATTTTGAAGTACAGAGCCAAAAGATCACAGAGAAACTTCAACAAGACTATCAAGTATGCATGCCGGAAGACACTCGCGGACAACCGTCCACGCATACGTGGAAGGTTTGCACGGAATGACGAAGCTGGTGAAATTGACAAACCTGCATGTTCAACAAGAGAAGAGGACGAAGATGATCTCTGGATTGAAGGGTTGAATGTCGAGGAGGAATTGGGGGAAAGGACAGCAAGAGGACCACAACAGTTTGTGAACAACAATTTTGGACCTCCACAATTCGACTACTATGTCTATTATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

338

Amino Acids

38.54

Weight (kDa)

5.15

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 235 - 277 3.6e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 998
Acc36I ACCTGC 1 cut(s) 865
AccII CGCG 1 cut(s) 791
AciI CCGC 2 cut(s) 40, 791
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 423, 651
AcsI RAATTY 3 cut(s) 289, 416, 616
AfaI GTAC 2 cut(s) 689, 725
AfiI CCNNNNNNNGG 2 cut(s) 142, 272
AgsI TTSAA 9 cut(s) 53, 214, 257, 676, 721, 754, 867, 902, 910
AluBI AGCT 7 cut(s) 171, 299, 495, 549, 564, 648, 839
AluI AGCT 7 cut(s) 171, 299, 495, 549, 564, 648, 839
Alw21I GWGCWC 2 cut(s) 551, 650
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 2 cut(s) 423, 651
ApeKI GCWGC 3 cut(s) 148, 450, 536
ApoI RAATTY 3 cut(s) 289, 416, 616
AspS9I GGNCC 4 cut(s) 247, 371, 947, 977
AsuHPI GGTGA 6 cut(s) 186, 328, 350, 422, 543, 854
AvaI CYCGRG 1 cut(s) 639
AvaII GGWCC 4 cut(s) 247, 371, 947, 977
BalI TGGCCA 1 cut(s) 425
BanII GRGCYC 2 cut(s) 551, 650
BbsI GAAGAC 3 cut(s) 63, 666, 788
Bbv12I GWGCWC 2 cut(s) 551, 650
BbvI GCAGC 3 cut(s) 160, 462, 548
BccI CCATC 1 cut(s) 458
BcgI CGANNNNNNTGC 4 cut(s) 155, 189, 225, 259
BfaI CTAG 3 cut(s) 137, 474, 492
BfmI CTRYAG 2 cut(s) 445, 693
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 3 cut(s) 149, 451, 537
BlsI GCNGC 3 cut(s) 150, 452, 538
Bme18I GGWCC 4 cut(s) 247, 371, 947, 977
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 4 cut(s) 247, 371, 947, 977
BmiI GGNNCC 2 cut(s) 249, 373
BoxI GACNNNNGTC 1 cut(s) 798
BpiI GAAGAC 3 cut(s) 63, 666, 788
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 2 cut(s) 182, 565
BsaAI YACGTR 1 cut(s) 812
BsaJI CCNNGG 2 cut(s) 367, 654
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 272
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 367, 654
BseLI CCNNNNNNNGG 2 cut(s) 142, 272
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 5 cut(s) 102, 108, 309, 315, 546
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 5 cut(s) 381, 598, 601, 713, 932
BseXI GCAGC 3 cut(s) 160, 462, 548
BseYI CCCAGC 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 791
BshFI GGCC 2 cut(s) 425, 653
BsiHKAI GWGCWC 2 cut(s) 551, 650
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 1 cut(s) 778
BslFI GGGAC 2 cut(s) 233, 357
BslI CCNNNNNNNGG 2 cut(s) 142, 272
BsmFI GGGAC 2 cut(s) 233, 357
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 2 cut(s) 425, 653
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 2 cut(s) 551, 650
Bsp143I GATC 4 cut(s) 10, 262, 737, 889
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 2 cut(s) 40, 791
BspANI GGCC 2 cut(s) 425, 653
BspCNI CTCAG 5 cut(s) 101, 107, 308, 316, 547
BspFNI CGCG 1 cut(s) 791
BspLI GGNNCC 2 cut(s) 249, 373
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 2 cut(s) 367, 654
BssMI GATC 4 cut(s) 10, 262, 737, 889
BssT1I CCWWGG 2 cut(s) 367, 654
Bst4CI ACNGT 2 cut(s) 800, 957
Bst6I CTCTTC 1 cut(s) 870
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 775
BstDEI CTNAG 5 cut(s) 88, 94, 295, 324, 555
BstDSI CCRYGG 1 cut(s) 654
BstEII GGTNACC 1 cut(s) 338
BstFNI CGCG 1 cut(s) 791
BstKTI GATC 4 cut(s) 13, 265, 740, 892
BstMBI GATC 4 cut(s) 10, 262, 737, 889
BstNSI RCATGY 2 cut(s) 777, 864
BstPAI GACNNNNGTC 1 cut(s) 798
BstPI GGTNACC 1 cut(s) 338
BstSFI CTRYAG 2 cut(s) 445, 693
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 160, 462, 548
BstV2I GAAGAC 3 cut(s) 63, 666, 788
BsuRI GGCC 2 cut(s) 425, 653
BtgI CCRYGG 1 cut(s) 654
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 2 cut(s) 600, 690
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 1 cut(s) 775
Cfr13I GGNCC 4 cut(s) 247, 371, 947, 977
CseI GACGC 1 cut(s) 671
Csp6I GTAC 2 cut(s) 688, 724
CviAII CATG 5 cut(s) 508, 580, 655, 774, 861
CviQI GTAC 2 cut(s) 688, 724
DdeI CTNAG 5 cut(s) 88, 94, 295, 324, 555
DpnI GATC 4 cut(s) 12, 264, 739, 891
DpnII GATC 4 cut(s) 10, 262, 737, 889
DrdI GACNNNNNNGTC 1 cut(s) 998
DseDI GACNNNNNNGTC 1 cut(s) 998
EaeI YGGCCR 2 cut(s) 423, 651
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Ecl136II GAGCTC 2 cut(s) 549, 648
Eco130I CCWWGG 2 cut(s) 367, 654
Eco24I GRGCYC 2 cut(s) 551, 650
Eco47I GGWCC 4 cut(s) 247, 371, 947, 977
Eco53kI GAGCTC 2 cut(s) 549, 648
Eco88I CYCGRG 1 cut(s) 639
Eco91I GGTNACC 1 cut(s) 338
EcoICRI GAGCTC 2 cut(s) 549, 648
EcoO109I RGGNCCY 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 367, 654
EcoT22I ATGCAT 1 cut(s) 775
EcoT38I GRGCYC 2 cut(s) 551, 650
ErhI CCWWGG 2 cut(s) 367, 654
FaeI CATG 5 cut(s) 511, 583, 658, 777, 864
FaqI GGGAC 2 cut(s) 233, 357
FatI CATG 5 cut(s) 507, 579, 654, 773, 860
Fnu4HI GCNGC 3 cut(s) 149, 451, 537
FriOI GRGCYC 2 cut(s) 551, 650
Fsp4HI GCNGC 3 cut(s) 149, 451, 537
FspBI CTAG 3 cut(s) 137, 474, 492
GluI GCNGC 3 cut(s) 149, 451, 537
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 2 cut(s) 425, 653
HapII CCGG 1 cut(s) 778
HgaI GACGC 1 cut(s) 671
Hin1II CATG 5 cut(s) 511, 583, 658, 777, 864
HinfI GANTC 4 cut(s) 92, 125, 500, 512
HpaII CCGG 1 cut(s) 778
HphI GGTGA 6 cut(s) 186, 328, 350, 422, 543, 854
Hpy166II GTNNAC 3 cut(s) 690, 803, 964
Hpy188I TCNGA 5 cut(s) 10, 70, 91, 124, 528
Hpy188III TCNNGA 6 cut(s) 161, 174, 254, 622, 641, 895
Hpy8I GTNNAC 3 cut(s) 690, 803, 964
HpyAV CCTTC 4 cut(s) 43, 85, 810, 896
HpyCH4III ACNGT 2 cut(s) 800, 957
HpyCH4IV ACGT 1 cut(s) 811
HpyCH4V TGCA 6 cut(s) 436, 613, 695, 773, 824, 860
HpyF3I CTNAG 5 cut(s) 88, 94, 295, 324, 555
HpySE526I ACGT 1 cut(s) 811
Hsp92II CATG 5 cut(s) 511, 583, 658, 777, 864
Kzo9I GATC 4 cut(s) 10, 262, 737, 889
LmnI GCTCC 2 cut(s) 145, 394
LpnPI CCDG 9 cut(s) 356, 567, 588, 610, 651, 791, 825, 870, 880
Lsp1109I GCAGC 3 cut(s) 160, 462, 548
MaeI CTAG 3 cut(s) 137, 474, 492
MaeII ACGT 1 cut(s) 811
MaeIII GTNAC 3 cut(s) 338, 398, 575
MalI GATC 4 cut(s) 12, 264, 739, 891
MboI GATC 4 cut(s) 10, 262, 737, 889
MboII GAAGA 9 cut(s) 65, 68, 180, 183, 451, 671, 793, 887, 896
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 551, 650
MlsI TGGCCA 1 cut(s) 425
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 2 cut(s) 86, 119
MmeI TCCRAC 1 cut(s) 511
Mox20I TGGCCA 1 cut(s) 425
Mph1103I ATGCAT 1 cut(s) 775
MscI TGGCCA 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 1 cut(s) 778
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 352
MvnI CGCG 1 cut(s) 791
NcoI CCATGG 1 cut(s) 654
NdeII GATC 4 cut(s) 10, 262, 737, 889
NlaIII CATG 5 cut(s) 511, 583, 658, 777, 864
NlaIV GGNNCC 2 cut(s) 249, 373
NmeAIII GCCGAG 1 cut(s) 629
NmuCI GTSAC 2 cut(s) 338, 575
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 2 cut(s) 777, 864
PaeI GCATGC 1 cut(s) 777
PaeR7I CTCGAG 1 cut(s) 639
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 500, 512
PkrI GCNGC 3 cut(s) 150, 452, 538
PleI GAGTC 2 cut(s) 86, 119
PpsI GAGTC 2 cut(s) 86, 119
Ppu21I YACGTR 1 cut(s) 812
PpuMI RGGWCCY 1 cut(s) 371
PshAI GACNNNNGTC 1 cut(s) 798
Psp124BI GAGCTC 2 cut(s) 551, 650
Psp5II RGGWCCY 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 665
PspN4I GGNNCC 2 cut(s) 249, 373
PspPI GGNCC 4 cut(s) 247, 371, 947, 977
PspPPI RGGWCCY 1 cut(s) 371
PstI CTGCAG 1 cut(s) 697
RsaI GTAC 2 cut(s) 689, 725
RsaNI GTAC 2 cut(s) 688, 724
SacI GAGCTC 2 cut(s) 551, 650
SatI GCNGC 3 cut(s) 149, 451, 537
Sau3AI GATC 4 cut(s) 10, 262, 737, 889
Sau96I GGNCC 4 cut(s) 247, 371, 947, 977
SchI GAGTC 2 cut(s) 86, 119
SduI GDGCHC 2 cut(s) 551, 650
SfcI CTRYAG 2 cut(s) 445, 693
Sfr274I CTCGAG 1 cut(s) 639
SinI GGWCC 4 cut(s) 247, 371, 947, 977
SlaI CTCGAG 1 cut(s) 639
SmlI CTYRAG 3 cut(s) 161, 544, 639
SmoI CTYRAG 3 cut(s) 161, 544, 639
SphI GCATGC 1 cut(s) 777
SsiI CCGC 2 cut(s) 40, 791
SspMI CTAG 3 cut(s) 137, 474, 492
SstI GAGCTC 2 cut(s) 551, 650
StyI CCWWGG 2 cut(s) 367, 654
TaaI ACNGT 2 cut(s) 800, 957
TaiI ACGT 1 cut(s) 814
TaqI TCGA 4 cut(s) 175, 640, 915, 990
TaqII GACCGA 1 cut(s) 235
TatI WGTACW 2 cut(s) 687, 723
TfiI GAWTC 2 cut(s) 500, 512
TscAI CASTG 2 cut(s) 607, 697
TseFI GTSAC 2 cut(s) 338, 575
TseI GCWGC 3 cut(s) 148, 450, 536
Tsp45I GTSAC 2 cut(s) 338, 575
TspDTI ATGAA 1 cut(s) 429
TspGWI ACGGA 1 cut(s) 841
TspRI CASTG 2 cut(s) 607, 697
VpaK11BI GGWCC 4 cut(s) 247, 371, 947, 977
XapI RAATTY 3 cut(s) 289, 416, 616
XceI RCATGY 2 cut(s) 777, 864
XhoI CTCGAG 1 cut(s) 639
XspI CTAG 3 cut(s) 137, 474, 492
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.