MD06G1088000.v1.1

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012159
Physical Location & Seq
Reverse (-)
21514287 .. 21516305
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1088000.v1.1.491

Sequence Viewer

Length: 978 bp
ATGTCCTCCTCCGATATCTACGTCGTCGACGACTCCTTCTACCGCCACTCCACCACCCCAGAAATGGTGGACTTGCCAGTCTTCTCCGAGCCATTCTCTCCCTTCTCGGACATTGAACTCCTCCAACTCCAAGCAATCTCCGACCAGCAAACCCAGCAAAACCCAGCTGACCAAAACTCCCCATCTCTCCTTTTTTCTTCTCCCCCAAGTTACCAGCTCGAAACCTTAAGGCTTTACCAACAAACCCAATTACACCAAATCGATCAAAACTCTCCAAATTTTCCAATTGGGATGCCGAATTTCTCCCCTTTTGATGCTCTGGAGGTCAAAACTGAACCCCATCAAGCTTTTGGGCCTCATACCTACGGCGGCGCAGAGCATATGGCAAAGTTTATGCAGAGGAGCTACAGTAGCAACTGCTTTGACGGAAGTAGTAACAAGCCTGATTTTTGCTTTAAGCCAAGCTTTGATTCTCTCATGGAGTCCCCAAGTTTTCAGAACCAAACTTTTAGCTTGAGCTCTCCGGAAAGCAGCTTTTTGGCAGGTCAAATGAGAAGGGTTTCCAGCACTGGTGATTTGCAAAATTTTAGAATAAATCGTGTTCCCAGAGAGAGCTCAGTGACGGAGGAAGCAGCTGCAAACTTCAAAATGGGGAGGTACAGTGCAGAAGAGAGGAAAGAGAGAATCTCAAAGTACAGAGCCAAAAGGTCACAGAGAAACTTCAACAAAACAATTAAGTATGCATGTCGAAAAACACTTGCGGACAACCGGCCCCGCATACGTGGCAGATTTGCACGCAACGACGAGACTGAAGAGATTTTCAAAGCTGCATGTTCAAGTAATAGAGAAGAAGACGAAGATGAGTTCTGGGTTGAAGGGTTTAATGTAGAAGAGGAAGAAATGAATGCAACAGTAAGAGGAGGAGGACAGTTTATGAACAATTTTGGAGCTACCCAGATTCAGTACTATGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

326

Amino Acids

37.24

Weight (kDa)

5.16

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 225 - 267 4.9e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 4 cut(s) 43, 369, 761, 775
AcsI RAATTY 3 cut(s) 277, 298, 583
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 3 cut(s) 659, 695, 965
AfiI CCNNNNNNNGG 1 cut(s) 64
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 6 cut(s) 116, 646, 724, 823, 837, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
Alw21I GWGCWC 2 cut(s) 521, 617
Alw26I GTCTC 1 cut(s) 800
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 353, 770
ApeKI GCWGC 4 cut(s) 531, 632, 635, 827
ApoI RAATTY 3 cut(s) 277, 298, 583
Asp700I GAANNNNTTC 1 cut(s) 559
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 353, 771
AsuHPI GGTGA 1 cut(s) 584
BanII GRGCYC 2 cut(s) 521, 617
BbsI GAAGAC 2 cut(s) 73, 858
Bbv12I GWGCWC 2 cut(s) 521, 617
BbvI GCAGC 4 cut(s) 543, 622, 644, 814
BccI CCATC 2 cut(s) 190, 348
BceAI ACGGC 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 800
BfmI CTRYAG 1 cut(s) 406
BfrI CTTAAG 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 533
BisI GCNGC 5 cut(s) 370, 532, 633, 636, 828
BlsI GCNGC 5 cut(s) 371, 533, 634, 637, 829
BmcAI AGTACT 1 cut(s) 965
BmgT120I GGNCC 2 cut(s) 353, 771
BmiI GGNNCC 1 cut(s) 773
BmsI GCATC 2 cut(s) 282, 304
BpiI GAAGAC 2 cut(s) 73, 858
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 671, 703
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 535
Bsa29I ATCGAT 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 782
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 8 cut(s) 32, 62, 161, 191, 394, 424, 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 2 cut(s) 77, 574
BseAI TCCGGA 1 cut(s) 523
BseCI ATCGAT 1 cut(s) 261
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 2 cut(s) 77, 574
BseRI GAGGAG 4 cut(s) 110, 415, 933, 936
BseXI GCAGC 4 cut(s) 543, 622, 644, 814
BseYI CCCAGC 2 cut(s) 153, 163
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 2 cut(s) 355, 772
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 521, 617
BsiSI CCGG 2 cut(s) 524, 769
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 1 cut(s) 469
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 2 cut(s) 355, 772
Bsp1286I GDGCHC 2 cut(s) 521, 617
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 4 cut(s) 43, 369, 761, 775
BspANI GGCC 2 cut(s) 355, 772
BspCNI CTCAG 1 cut(s) 629
BspDI ATCGAT 1 cut(s) 261
BspEI TCCGGA 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 773
BspMI ACCTGC 1 cut(s) 533
BspTI CTTAAG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 768
BsrI ACTGG 2 cut(s) 77, 574
BssAI RCCGGY 1 cut(s) 768
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 4 cut(s) 410, 662, 913, 930
Bst6I CTCTTC 3 cut(s) 663, 807, 885
BstAFI CTTAAG 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 1 cut(s) 796
BstDEI CTNAG 1 cut(s) 616
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 154, 411, 783
BstNSI RCATGY 2 cut(s) 747, 834
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 4 cut(s) 543, 622, 644, 814
BstV2I GAAGAC 2 cut(s) 73, 858
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 2 cut(s) 355, 772
BsuTUI ATCGAT 1 cut(s) 261
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 567, 624, 667
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 1 cut(s) 796
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 768
Cfr13I GGNCC 2 cut(s) 353, 771
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 3 cut(s) 658, 694, 964
CviAII CATG 3 cut(s) 478, 744, 831
CviQI GTAC 3 cut(s) 658, 694, 964
DdeI CTNAG 1 cut(s) 616
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 3 cut(s) 663, 807, 885
EarI CTCTTC 3 cut(s) 663, 807, 885
Ecl136II GAGCTC 2 cut(s) 519, 615
Eco24I GRGCYC 2 cut(s) 521, 617
Eco32I GATATC 1 cut(s) 16
Eco53kI GAGCTC 2 cut(s) 519, 615
Eco57I CTGAAG 1 cut(s) 831
EcoICRI GAGCTC 2 cut(s) 519, 615
EcoRV GATATC 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 2 cut(s) 521, 617
FaeI CATG 3 cut(s) 481, 747, 834
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 469
FatI CATG 3 cut(s) 477, 743, 830
FauI CCCGC 1 cut(s) 782
FauNDI CATATG 1 cut(s) 381
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 370, 532, 633, 636, 828
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 2 cut(s) 521, 617
Fsp4HI GCNGC 5 cut(s) 370, 532, 633, 636, 828
GlaI GCGC 1 cut(s) 373
GluI GCNGC 5 cut(s) 370, 532, 633, 636, 828
GsaI CCCAGC 2 cut(s) 157, 167
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 355, 772
HapII CCGG 2 cut(s) 524, 769
HhaI GCGC 1 cut(s) 374
Hin1II CATG 3 cut(s) 481, 747, 834
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 2 cut(s) 345, 463
HinfI GANTC 5 cut(s) 32, 470, 482, 684, 958
HpaII CCGG 2 cut(s) 524, 769
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 28, 70
Hpy188I TCNGA 5 cut(s) 13, 88, 109, 142, 498
Hpy188III TCNNGA 2 cut(s) 320, 524
Hpy8I GTNNAC 2 cut(s) 28, 70
Hpy99I CGWCG 4 cut(s) 26, 29, 32, 806
HpyAV CCTTC 4 cut(s) 46, 112, 549, 869
HpyCH4III ACNGT 4 cut(s) 410, 662, 913, 930
HpyCH4IV ACGT 2 cut(s) 21, 781
HpyCH4V TGCA 8 cut(s) 397, 580, 638, 665, 743, 794, 830, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 411, 783
HpyF3I CTNAG 1 cut(s) 616
HpySE526I ACGT 2 cut(s) 21, 781
Hsp92II CATG 3 cut(s) 481, 747, 834
HspAI GCGC 1 cut(s) 372
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 402, 947
Lsp1109I GCAGC 4 cut(s) 543, 622, 644, 814
LweI GCATC 2 cut(s) 282, 304
MaeII ACGT 2 cut(s) 21, 781
MaeIII GTNAC 4 cut(s) 209, 434, 619, 708
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 9 cut(s) 73, 189, 680, 824, 860, 863, 869, 902, 908
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 521, 617
MluCI AATT 7 cut(s) 248, 277, 285, 298, 583, 732, 940
MlyI GAGTC 2 cut(s) 26, 491
MmeI TCCRAC 2 cut(s) 148, 165
Mph1103I ATGCAT 1 cut(s) 745
MroI TCCGGA 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 559
MseI TTAA 4 cut(s) 227, 456, 735, 882
MspA1I CMGCKG 2 cut(s) 167, 635
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 2 cut(s) 524, 769
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 910
MwoI GCNNNNNNNGC 3 cut(s) 154, 411, 783
NdeI CATATG 1 cut(s) 381
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 481, 747, 834
NlaIV GGNNCC 1 cut(s) 773
NmuCI GTSAC 2 cut(s) 619, 708
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 2 cut(s) 747, 834
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 910
PdmI GAANNNNTTC 1 cut(s) 559
PfeI GAWTC 3 cut(s) 470, 684, 958
PkrI GCNGC 5 cut(s) 371, 533, 634, 637, 829
PleI GAGTC 2 cut(s) 26, 490
PpsI GAGTC 2 cut(s) 26, 490
Ppu21I YACGTR 1 cut(s) 782
Psp124BI GAGCTC 2 cut(s) 521, 617
PspFI CCCAGC 2 cut(s) 153, 163
PspN4I GGNNCC 1 cut(s) 773
PspPI GGNCC 2 cut(s) 353, 771
PvuII CAGCTG 2 cut(s) 167, 635
RsaI GTAC 3 cut(s) 659, 695, 965
RsaNI GTAC 3 cut(s) 658, 694, 964
SacI GAGCTC 2 cut(s) 521, 617
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 4 cut(s) 227, 456, 735, 882
SatI GCNGC 5 cut(s) 370, 532, 633, 636, 828
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 353, 771
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 2 cut(s) 26, 491
SduI GDGCHC 2 cut(s) 521, 617
SfaNI GCATC 2 cut(s) 282, 304
SfcI CTRYAG 1 cut(s) 406
SgrDI CGTCGACG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 226, 514
SmoI CTYRAG 2 cut(s) 226, 514
Sse9I AATT 7 cut(s) 248, 277, 285, 298, 583, 732, 940
SsiI CCGC 4 cut(s) 43, 369, 761, 775
SstI GAGCTC 2 cut(s) 521, 617
TaaI ACNGT 4 cut(s) 410, 662, 913, 930
TaiI ACGT 2 cut(s) 24, 784
TaqI TCGA 4 cut(s) 27, 219, 261, 748
TasI AATT 7 cut(s) 248, 277, 285, 298, 583, 732, 940
TatI WGTACW 2 cut(s) 693, 963
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 3 cut(s) 470, 684, 958
Tru1I TTAA 4 cut(s) 227, 456, 735, 882
Tru9I TTAA 4 cut(s) 227, 456, 735, 882
TscAI CASTG 3 cut(s) 574, 624, 667
TseFI GTSAC 2 cut(s) 619, 708
TseI GCWGC 4 cut(s) 531, 632, 635, 827
Tsp45I GTSAC 2 cut(s) 619, 708
TspDTI ATGAA 2 cut(s) 917, 950
TspGWI ACGGA 2 cut(s) 441, 638
TspRI CASTG 3 cut(s) 574, 624, 667
Vha464I CTTAAG 1 cut(s) 226
XapI RAATTY 3 cut(s) 277, 298, 583
XceI RCATGY 2 cut(s) 747, 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 347
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 559
ZrmI AGTACT 1 cut(s) 965
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.