FvH4_5g02850

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012159
Physical Location & Seq
Reverse (-)
1713411 .. 1715543
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02850.t1

Sequence Viewer

Length: 912 bp
ATGTCGACATATGATCTCTCTGTTGACGATGGCTCATTCTATTGCCATTCCTTTGAAGCTGACCCCTTCTCTGATCCTTTCACACCTTTCTCAGACTCAGCCCTTGATATCCTCCAAACACTCTCAGACTACCAAAACACACAAACCCTAGTTGAGGAGCAGCCTCATTCTCTTGAGCAAAGCTCCTCAAATCTTGTTTCTTCTTCACCCCCGAGTTTCCAATTGGAAAGTTTGAACCTCTACCAAGCAACCCATTTAAGCTCGGTTGAAAATGATCCCAATTTGGGAAATGTGTTGGAAGATTTCTTAGTTTTGGAAAATTTGTTGGCGGAAAGTGAGCAATGTCTTGTCGGTTCTGAGCAAAATGCATGCGACACCCAAGTTTCCCAACAAGCTTTTGCTCCTCATAGTTGTAGTGGTGGTGCTGAAAATGTGGCCGAGTATATGCAAAGTAGCTATAGCAGCAACTCCTTCGATGGACAACCTGGTTTTGTTTTCCGACCTTGCTTTGACCCTCTCCTGGAATCCCCAAATTTTCAAACCCAAGAAGCCTCCTTGAGCTCACCTGAGAGCAGTTACTTGACTAGTCACATGAAGAGGGTTTCCAGCACCGAAGATATGCAAAACATCGAAATAGCTCGTGATCCTCAAGAGAGCTCGGCCATGGAGATTGCTAAGAAATTCAAGATGACTAGGTACACTGCAGAAGAGAGGAAAGAAAGGATTTCGAAGTACAGATCGAGGAAAGCGCAAAGAAACTTCAACAAGACTATTAAGTATGCATGCCGGAAGACAGTAGCAGACAGGCGTCCACGCATAGGTGGACGATTTGTAAGATATGGGCAAGCTGGTGAGACTCACAGACCTGCATGTTCAACCAGAGAAGAAGACGAAGATGATCTGTGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

304

Amino Acids

34.15

Weight (kDa)

4.7

Isoelectric Point (pI)

69.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 238 - 279 2e-15 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 874
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 329
AclWI GGATC 3 cut(s) 68, 269, 638
AcoI YGGCCR 2 cut(s) 435, 660
AcsI RAATTY 3 cut(s) 319, 532, 680
AcyI GRCGYC 1 cut(s) 808
AfaI GTAC 2 cut(s) 698, 734
AfiI CCNNNNNNNGG 4 cut(s) 154, 284, 520, 818
AgsI TTSAA 7 cut(s) 56, 235, 269, 539, 685, 763, 876
AhlI ACTAGT 1 cut(s) 584
AjnI CCWGG 2 cut(s) 484, 519
AluBI AGCT 9 cut(s) 59, 183, 261, 395, 456, 561, 638, 657, 848
AluI AGCT 9 cut(s) 59, 183, 261, 395, 456, 561, 638, 657, 848
Alw21I GWGCWC 2 cut(s) 563, 659
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 3 cut(s) 68, 269, 638
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 2 cut(s) 435, 660
ApeKI GCWGC 2 cut(s) 160, 462
ApoI RAATTY 3 cut(s) 319, 532, 680
AspLEI GCGC 1 cut(s) 751
AsuHPI GGTGA 3 cut(s) 198, 555, 863
AsuII TTCGAA 1 cut(s) 728
AvaI CYCGRG 1 cut(s) 211
BanII GRGCYC 2 cut(s) 563, 659
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 2 cut(s) 797, 894
Bbv12I GWGCWC 2 cut(s) 563, 659
BbvI GCAGC 2 cut(s) 172, 474
BccI CCATC 2 cut(s) 23, 470
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciT130I CCWGG 2 cut(s) 486, 521
BcoDI GTCTC 1 cut(s) 848
BcuI ACTAGT 1 cut(s) 584
BfaI CTAG 3 cut(s) 149, 585, 693
BfmI CTRYAG 2 cut(s) 457, 702
BfuAI ACCTGC 1 cut(s) 874
BisI GCNGC 2 cut(s) 161, 463
BlsI GCNGC 2 cut(s) 162, 464
Bme1390I CCNGG 2 cut(s) 486, 521
BmeT110I CYCGRG 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 486, 521
BoxI GACNNNNGTC 1 cut(s) 807
BpiI GAAGAC 2 cut(s) 797, 894
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu14I TTCGAA 1 cut(s) 728
BpuEI CTTGAG 3 cut(s) 194, 577, 633
BsaHI GRCGYC 1 cut(s) 808
BsaJI CCNNGG 1 cut(s) 663
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 284, 520, 818
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 2 cut(s) 486, 521
BseDI CCNNGG 1 cut(s) 663
BseLI CCNNNNNNNGG 4 cut(s) 154, 284, 520, 818
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 5 cut(s) 105, 111, 138, 348, 558
BseRI GAGGAG 3 cut(s) 170, 175, 393
BseXI GCAGC 2 cut(s) 172, 474
BshFI GGCC 2 cut(s) 437, 662
BsiHKAI GWGCWC 2 cut(s) 563, 659
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 787
BslI CCNNNNNNNGG 4 cut(s) 154, 284, 520, 818
BsmAI GTCTC 1 cut(s) 848
BsnI GGCC 2 cut(s) 437, 662
BsoBI CYCGRG 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 728
Bsp1286I GDGCHC 2 cut(s) 563, 659
Bsp143I GATC 6 cut(s) 13, 73, 274, 643, 737, 898
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 1 cut(s) 329
BspANI GGCC 2 cut(s) 437, 662
BspCNI CTCAG 5 cut(s) 104, 110, 137, 349, 559
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 3 cut(s) 68, 269, 638
BspT104I TTCGAA 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 6 cut(s) 13, 73, 274, 643, 737, 898
BssNI GRCGYC 1 cut(s) 808
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 663
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 2 cut(s) 486, 521
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 2 cut(s) 590, 702
BstACI GRCGYC 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 728
BstC8I GCNNGC 3 cut(s) 370, 784, 846
BstDEI CTNAG 7 cut(s) 91, 97, 124, 307, 357, 567, 675
BstDSI CCRYGG 1 cut(s) 663
BstENI CCTNNNNNAGG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 6 cut(s) 16, 76, 277, 646, 740, 901
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 6 cut(s) 13, 73, 274, 643, 737, 898
BstMWI GCNNNNNNNGC 1 cut(s) 462
BstNI CCWGG 2 cut(s) 486, 521
BstNSI RCATGY 3 cut(s) 372, 786, 873
BstPAI GACNNNNGTC 1 cut(s) 807
BstSCI CCNGG 2 cut(s) 484, 519
BstSFI CTRYAG 2 cut(s) 457, 702
BstV1I GCAGC 2 cut(s) 172, 474
BstV2I GAAGAC 2 cut(s) 797, 894
BsuRI GGCC 2 cut(s) 437, 662
BtgI CCRYGG 1 cut(s) 663
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 1 cut(s) 699
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 3 cut(s) 370, 784, 846
CfoI GCGC 1 cut(s) 751
CseI GACGC 1 cut(s) 797
CsiI ACCWGGT 1 cut(s) 484
Csp6I GTAC 2 cut(s) 697, 733
CviAII CATG 5 cut(s) 369, 592, 664, 783, 870
CviQI GTAC 2 cut(s) 697, 733
DdeI CTNAG 7 cut(s) 91, 97, 124, 307, 357, 567, 675
DpnI GATC 6 cut(s) 15, 75, 276, 645, 739, 900
DpnII GATC 6 cut(s) 13, 73, 274, 643, 737, 898
EaeI YGGCCR 2 cut(s) 435, 660
Eam1104I CTCTTC 2 cut(s) 590, 702
EarI CTCTTC 2 cut(s) 590, 702
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 2 cut(s) 561, 657
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 563, 659
Eco32I GATATC 1 cut(s) 109
Eco53kI GAGCTC 2 cut(s) 561, 657
Eco88I CYCGRG 1 cut(s) 211
EcoICRI GAGCTC 2 cut(s) 561, 657
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 484, 519
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 663
EcoT22I ATGCAT 2 cut(s) 370, 784
EcoT38I GRGCYC 2 cut(s) 563, 659
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 5 cut(s) 372, 595, 667, 786, 873
FatI CATG 5 cut(s) 368, 591, 663, 782, 869
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 161, 463
FriOI GRGCYC 2 cut(s) 563, 659
Fsp4HI GCNGC 2 cut(s) 161, 463
FspBI CTAG 3 cut(s) 149, 585, 693
GlaI GCGC 1 cut(s) 750
GluI GCNGC 2 cut(s) 161, 463
HaeIII GGCC 2 cut(s) 437, 662
HapII CCGG 1 cut(s) 787
HgaI GACGC 1 cut(s) 797
HhaI GCGC 1 cut(s) 751
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 5 cut(s) 372, 595, 667, 786, 873
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 2 cut(s) 6, 25
HindII GTYRAC 2 cut(s) 6, 25
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 95, 524, 856
HpaII CCGG 1 cut(s) 787
HphI GGTGA 3 cut(s) 198, 555, 863
Hpy166II GTNNAC 5 cut(s) 6, 25, 699, 812, 824
Hpy188I TCNGA 5 cut(s) 73, 94, 127, 358, 500
Hpy188III TCNNGA 4 cut(s) 173, 641, 650, 685
Hpy8I GTNNAC 5 cut(s) 6, 25, 699, 812, 824
HpyAV CCTTC 2 cut(s) 76, 481
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4V TGCA 6 cut(s) 368, 448, 622, 704, 782, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 462
HpyF3I CTNAG 7 cut(s) 91, 97, 124, 307, 357, 567, 675
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 5 cut(s) 372, 595, 667, 786, 873
HspAI GCGC 1 cut(s) 749
Kzo9I GATC 6 cut(s) 13, 73, 274, 643, 737, 898
LmnI GCTCC 3 cut(s) 157, 188, 406
Lsp1109I GCAGC 2 cut(s) 172, 474
MabI ACCWGGT 1 cut(s) 484
MaeI CTAG 3 cut(s) 149, 585, 693
MaeIII GTNAC 2 cut(s) 575, 587
MalI GATC 6 cut(s) 15, 75, 276, 645, 739, 900
MboI GATC 6 cut(s) 13, 73, 274, 643, 737, 898
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 563, 659
MluCI AATT 5 cut(s) 221, 280, 319, 532, 680
MlyI GAGTC 2 cut(s) 89, 850
MmeI TCCRAC 2 cut(s) 276, 523
Mph1103I ATGCAT 2 cut(s) 370, 784
MseI TTAA 3 cut(s) 257, 774, 910
MspI CCGG 1 cut(s) 787
MspR9I CCNGG 2 cut(s) 486, 521
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 2 cut(s) 486, 521
MwoI GCNNNNNNNGC 1 cut(s) 462
NcoI CCATGG 1 cut(s) 663
NdeI CATATG 1 cut(s) 10
NdeII GATC 6 cut(s) 13, 73, 274, 643, 737, 898
NlaIII CATG 5 cut(s) 372, 595, 667, 786, 873
NmeAIII GCCGAG 2 cut(s) 463, 638
NmuCI GTSAC 1 cut(s) 587
NsiI ATGCAT 2 cut(s) 370, 784
NspI RCATGY 3 cut(s) 372, 786, 873
NspV TTCGAA 1 cut(s) 728
PaeI GCATGC 2 cut(s) 372, 786
PfeI GAWTC 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 2 cut(s) 162, 464
PleI GAGTC 2 cut(s) 89, 850
PpsI GAGTC 2 cut(s) 89, 850
PshAI GACNNNNGTC 1 cut(s) 807
Psp124BI GAGCTC 2 cut(s) 563, 659
Psp6I CCWGG 2 cut(s) 484, 519
PspGI CCWGG 2 cut(s) 484, 519
PstI CTGCAG 1 cut(s) 706
RsaI GTAC 2 cut(s) 698, 734
RsaNI GTAC 2 cut(s) 697, 733
SacI GAGCTC 2 cut(s) 563, 659
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 257, 774, 910
SatI GCNGC 2 cut(s) 161, 463
Sau3AI GATC 6 cut(s) 13, 73, 274, 643, 737, 898
SchI GAGTC 2 cut(s) 89, 850
ScrFI CCNGG 2 cut(s) 486, 521
SduI GDGCHC 2 cut(s) 563, 659
SexAI ACCWGGT 1 cut(s) 484
SfcI CTRYAG 2 cut(s) 457, 702
SfuI TTCGAA 1 cut(s) 728
SmlI CTYRAG 3 cut(s) 173, 556, 648
SmoI CTYRAG 3 cut(s) 173, 556, 648
SpeI ACTAGT 1 cut(s) 584
SphI GCATGC 2 cut(s) 372, 786
Sse9I AATT 5 cut(s) 221, 280, 319, 532, 680
SsiI CCGC 1 cut(s) 329
SspMI CTAG 3 cut(s) 149, 585, 693
SstI GAGCTC 2 cut(s) 563, 659
StyD4I CCNGG 2 cut(s) 484, 519
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 796
TaqI TCGA 5 cut(s) 5, 474, 630, 728, 740
TasI AATT 5 cut(s) 221, 280, 319, 532, 680
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 257, 774, 910
Tru9I TTAA 3 cut(s) 257, 774, 910
TscAI CASTG 1 cut(s) 706
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 2 cut(s) 160, 462
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 608
TspRI CASTG 1 cut(s) 706
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 3 cut(s) 319, 532, 680
XceI RCATGY 3 cut(s) 372, 786, 873
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 149, 585, 693
Zsp2I ATGCAT 2 cut(s) 370, 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.