RchiOBHm_Chr7g0197051

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012159
Physical Location & Seq
Forward (+)
14983056 .. 14985043
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17627

Sequence Viewer

Length: 1020 bp
ATGTCTTCTGATCTCTTTGTTGACGATGCCTCCTTATACCGCCATTCCTATGAAACAGACCTCTTGTCTGACCCCTTCTCTCCTTTCTCAGACTCAGCTCTTGACCTCCTTCAAGCAATCTCTGACCACCGAAACGTACAAAACCCAGTTGAGGATCAGTCTCATTCTTTTGAGCAAAGCTCCCCAAATCCTGTTTCTTCTTCACCCCCAAGTTATCAATCGGGAAGTTTGAGCCATTACCAAGCAACCCATCTGGGCCCTCTTGAAAATGGTCCCAGTTTGGGAGATGCCTTGGGAAATTTCTCAGCTTTGGACATTTTAGGGGAGGTGAAAACTGAGCAATGTCATGTGGGTTTTGACCAGAATGCTCATAATTACAACACCCAACACGCTTTTTCTCCTCACAGTTACAGTGGTGGTGCTGAAAATGTGGCCAAATTTATGCAGAGGAGCTATAGCAGCAACTCCTTTGACGGAAAGCCTGGCTTTGTTTTCCAACCTCGCTTCGATTCTCACATGGAATCCCCAAAATTTCAGAACCAAGCAGCCTCCTTGAGCTCACCTGAGAGCAGCTACTTGACAAGTCAAATGAGAAGGGTTTCCAGCACTGGAGATTTACAAAATTTCAAAACTGCTCGTAATCCTCGAGAGAGCTCGGCCATGGAGGAAGCTGGGAGCTTCAAGATGGGGAAGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAGTACAGAGCTAAGAGATCACAGAGAAACTTCAACAAGACTATCAAGTATGCATGCCGAAAGACACTAGCAGACAACCGTCCACGCATACGTGGAAGATTTGCACGAAATGATGAAACTGGTGATCTCACCAAACCTGCATGTTCAACCAGAGAAGAGGACGAAGATGATCTCTGGATTGAAGGGTTGAATGTAGATGAGGAATTAGGGGATAGGACAGTAAGAGGAGGACAGCAGTTTATGAACAACAACTTTGCACCCCCGCAGTTCCAGTACTATGGCTATTATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

339

Amino Acids

38.19

Weight (kDa)

5.68

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 237 - 279 5.2e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 871
AciI CCGC 2 cut(s) 40, 989
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 432, 657
AcsI RAATTY 4 cut(s) 298, 437, 530, 622
AfaI GTAC 4 cut(s) 138, 695, 731, 1001
AfiI CCNNNNNNNGG 2 cut(s) 151, 281
AgsI TTSAA 9 cut(s) 113, 266, 628, 682, 726, 760, 873, 908, 916
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
Alw21I GWGCWC 2 cut(s) 560, 656
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 3 cut(s) 256, 432, 657
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 459, 545, 570
ApoI RAATTY 4 cut(s) 298, 437, 530, 622
Asp700I GAANNNNTTC 1 cut(s) 598
AspS9I GGNCC 3 cut(s) 256, 257, 272
AsuHPI GGTGA 5 cut(s) 195, 340, 552, 847, 860
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 3 cut(s) 260, 560, 656
Bbv12I GWGCWC 2 cut(s) 560, 656
BbvI GCAGC 3 cut(s) 471, 557, 582
BccI CCATC 2 cut(s) 258, 679
BciT130I CCWGG 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 871
BisI GCNGC 3 cut(s) 460, 546, 571
BlsI GCNGC 3 cut(s) 461, 547, 572
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 256, 257, 272
BmiI GGNNCC 2 cut(s) 258, 274
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 140, 270
BmsI GCATC 2 cut(s) 16, 277
BmuI ACTGGG 2 cut(s) 140, 270
BoxI GACNNNNGTC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 291, 660
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 281
Bse1I ACTGG 5 cut(s) 146, 276, 613, 850, 997
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 291, 660
BseLI CCNNNNNNNGG 2 cut(s) 151, 281
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 5 cut(s) 102, 108, 318, 327, 555
BseNI ACTGG 5 cut(s) 146, 276, 613, 850, 997
BseRI GAGGAG 4 cut(s) 390, 463, 719, 966
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 3 cut(s) 471, 557, 582
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 3 cut(s) 258, 434, 659
BsiHKAI GWGCWC 2 cut(s) 560, 656
BsiHKCI CYCGRG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 151, 281
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 3 cut(s) 258, 434, 659
BsoBI CYCGRG 1 cut(s) 645
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 260, 560, 656
Bsp143I GATC 5 cut(s) 10, 154, 743, 850, 895
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 2 cut(s) 40, 989
BspANI GGCC 3 cut(s) 258, 434, 659
BspCNI CTCAG 5 cut(s) 101, 107, 317, 328, 556
BspLI GGNNCC 2 cut(s) 258, 274
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 5 cut(s) 146, 276, 613, 850, 997
BssECI CCNNGG 2 cut(s) 291, 660
BssMI GATC 5 cut(s) 10, 154, 743, 850, 895
BssT1I CCWWGG 2 cut(s) 291, 660
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 5 cut(s) 407, 413, 698, 806, 946
Bst6I CTCTTC 1 cut(s) 876
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
BstDSI CCRYGG 1 cut(s) 660
BstKTI GATC 5 cut(s) 13, 157, 746, 853, 898
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 5 cut(s) 10, 154, 743, 850, 895
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 2 cut(s) 783, 870
BstPAI GACNNNNGTC 1 cut(s) 804
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 471, 557, 582
BstXI CCANNNNNNTGG 1 cut(s) 1004
BsuRI GGCC 3 cut(s) 258, 434, 659
BtgI CCRYGG 1 cut(s) 660
BtsIMutI CAGTG 3 cut(s) 418, 606, 703
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 1 cut(s) 781
Cfr13I GGNCC 3 cut(s) 256, 257, 272
Csp6I GTAC 4 cut(s) 137, 694, 730, 1000
CviAII CATG 5 cut(s) 347, 517, 661, 780, 867
CviQI GTAC 4 cut(s) 137, 694, 730, 1000
DdeI CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
DpnI GATC 5 cut(s) 12, 156, 745, 852, 897
DpnII GATC 5 cut(s) 10, 154, 743, 850, 895
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 432, 657
Eam1104I CTCTTC 1 cut(s) 876
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 876
Ecl136II GAGCTC 2 cut(s) 558, 654
Eco130I CCWWGG 2 cut(s) 291, 660
Eco24I GRGCYC 3 cut(s) 260, 560, 656
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 558, 654
Eco88I CYCGRG 1 cut(s) 645
EcoICRI GAGCTC 2 cut(s) 558, 654
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 291, 660
EcoT22I ATGCAT 1 cut(s) 781
EcoT38I GRGCYC 3 cut(s) 260, 560, 656
ErhI CCWWGG 2 cut(s) 291, 660
FaeI CATG 5 cut(s) 350, 520, 664, 783, 870
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 258
FatI CATG 5 cut(s) 346, 516, 660, 779, 866
FauI CCCGC 1 cut(s) 996
Fnu4HI GCNGC 3 cut(s) 460, 546, 571
FriOI GRGCYC 3 cut(s) 260, 560, 656
Fsp4HI GCNGC 3 cut(s) 460, 546, 571
FspBI CTAG 1 cut(s) 794
GluI GCNGC 3 cut(s) 460, 546, 571
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 3 cut(s) 258, 434, 659
Hin1II CATG 5 cut(s) 350, 520, 664, 783, 870
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 92, 509, 521
HphI GGTGA 5 cut(s) 195, 340, 552, 847, 860
Hpy166II GTNNAC 2 cut(s) 22, 809
Hpy188I TCNGA 5 cut(s) 10, 70, 91, 124, 537
Hpy188III TCNNGA 6 cut(s) 101, 222, 263, 647, 682, 901
Hpy8I GTNNAC 2 cut(s) 22, 809
HpyAV CCTTC 4 cut(s) 85, 119, 588, 902
HpyCH4III ACNGT 5 cut(s) 407, 413, 698, 806, 946
HpyCH4IV ACGT 2 cut(s) 135, 817
HpyCH4V TGCA 6 cut(s) 445, 701, 779, 830, 866, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
HpySE526I ACGT 2 cut(s) 135, 817
Hsp92II CATG 5 cut(s) 350, 520, 664, 783, 870
Kzo9I GATC 5 cut(s) 10, 154, 743, 850, 895
LmnI GCTCC 3 cut(s) 185, 450, 675
Lsp1109I GCAGC 3 cut(s) 471, 557, 582
LweI GCATC 2 cut(s) 16, 277
MaeI CTAG 1 cut(s) 794
MaeII ACGT 2 cut(s) 135, 817
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 12, 156, 745, 852, 897
MboI GATC 5 cut(s) 10, 154, 743, 850, 895
MboII GAAGA 5 cut(s) 189, 192, 834, 893, 902
MhlI GDGCHC 3 cut(s) 260, 560, 656
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 6 cut(s) 298, 373, 437, 530, 622, 929
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 520
Mox20I TGGCCA 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 598
MscI TGGCCA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 459
NcoI CCATGG 1 cut(s) 660
NdeII GATC 5 cut(s) 10, 154, 743, 850, 895
NlaIII CATG 5 cut(s) 350, 520, 664, 783, 870
NlaIV GGNNCC 2 cut(s) 258, 274
NmeAIII GCCGAG 1 cut(s) 635
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 2 cut(s) 783, 870
PaeI GCATGC 1 cut(s) 783
PaeR7I CTCGAG 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 643
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 509, 521
PkrI GCNGC 3 cut(s) 461, 547, 572
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 804
Psp124BI GAGCTC 2 cut(s) 560, 656
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 258, 274
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 256, 257, 272
RsaI GTAC 4 cut(s) 138, 695, 731, 1001
RsaNI GTAC 4 cut(s) 137, 694, 730, 1000
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 2 cut(s) 560, 656
SatI GCNGC 3 cut(s) 460, 546, 571
Sau3AI GATC 5 cut(s) 10, 154, 743, 850, 895
Sau96I GGNCC 3 cut(s) 256, 257, 272
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 3 cut(s) 260, 560, 656
SfaNI GCATC 2 cut(s) 16, 277
SfcI CTRYAG 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 553, 645
SmoI CTYRAG 2 cut(s) 553, 645
SphI GCATGC 1 cut(s) 783
Sse9I AATT 6 cut(s) 298, 373, 437, 530, 622, 929
SsiI CCGC 2 cut(s) 40, 989
SspMI CTAG 1 cut(s) 794
SstI GAGCTC 2 cut(s) 560, 656
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 291, 660
TaaI ACNGT 5 cut(s) 407, 413, 698, 806, 946
TaiI ACGT 2 cut(s) 138, 820
TaqI TCGA 2 cut(s) 507, 646
TasI AATT 6 cut(s) 298, 373, 437, 530, 622, 929
TatI WGTACW 3 cut(s) 693, 729, 999
TfiI GAWTC 2 cut(s) 509, 521
TscAI CASTG 3 cut(s) 418, 613, 703
TseI GCWGC 3 cut(s) 459, 545, 570
TspDTI ATGAA 3 cut(s) 66, 855, 983
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 3 cut(s) 418, 613, 703
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 4 cut(s) 298, 437, 530, 622
XceI RCATGY 2 cut(s) 783, 870
XhoI CTCGAG 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 1 cut(s) 794
ZrmI AGTACT 1 cut(s) 1001
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.