Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012159

Physical Location & Seq

Genomic Coordinates Reverse (-)

17137537 .. 17138124

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1109100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAAGACCTGCAGTTCTTCTCCGAGCCATTCTCTCCCTTCTCGGACATTGACCTCCTTCAACTCCAAGCAATCTCTAACCAGCAAACCTATCAAAACGCAACTGACCCAAACTCTCCATCTCTCATCTCTTCTTCTCCCCCAAGTTACCAGTTCGAAACATTAAGTCTATACCAGCAAACCCAGTTGTACCAAATGGAACAAAAATGTCCAAATTTGCCAATTGGGTGGCCGAATTTCTCGCTTTTTGATGCTCTGGAGGTCAAAGCTGAAGAATCTCATCAAGCTTTTGAGCCTCATAGCTATGGCAGCACGGAGAATGCGGTAAAGTTTATGCAGATGAGCTACAGCAGTAACTGCTTTGATGGAAATAATAACAAGCCTGGTTTTTACTTCCAACCAAGCTTTGATTCTCTCATGAAGTCCCCAAGTTTTCAGAACCAAGCTTTGAACTTAAGCTCTCCGGAAAGCAGCTTTCTGGACGGTCAAATGAGAAGGATTTCCAGCACTGGTGATTTGCAAATCATATTACTCTCCAGAATTTTAATTAATCTGCTCTGCGTTTGTTTTGATTTAATCCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

196

Amino Acids

22.13

Weight (kDa)

4.35

Isoelectric Point (pI)

65.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63820 AT5G41380
fragaria_vesca	FvH4_1g29660 FvH4_5g02850
malus_domestica	MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica	Prupe.5G104100_v2.0.a1
pyrus_communis	pycom06g08410
rosa_chinensis	RchiOBHm_Chr7g0197051
rosa_laevigata	RLG00000003963
rosa_multiflora	Rmu_sc0003411.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258700
rosa_rugosa	Rorug07G0037300
rosa_samantha	Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana	Rw7G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	463
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	3 cut(s)	214, 235, 540
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	191
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	62, 451
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	8 cut(s)	269, 287, 303, 345, 405, 446, 459, 474
AluI	AGCT	8 cut(s)	269, 287, 303, 345, 405, 446, 459, 474
AlwNI	CAGNNNCTG	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	463
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	309, 471
ApoI	RAATTY	3 cut(s)	214, 235, 540
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	321, 483
BccI	CCATC	2 cut(s)	127, 359
BciT130I	CCWGG	1 cut(s)	384
BfmI	CTRYAG	2 cut(s)	11, 346
BfrI	CTTAAG	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	310, 472
BlsI	GCNGC	2 cut(s)	311, 473
Bme1390I	CCNGG	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	2 cut(s)	278, 520
Bpu14I	TTCGAA	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	151, 184, 514
BseAI	TCCGGA	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	151, 184, 514
BseXI	GCAGC	2 cut(s)	321, 483
BshFI	GGCC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	463
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	151, 184, 514
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	136
BstAFI	CTTAAG	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 357
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	11, 346
BstV1I	GCAGC	2 cut(s)	321, 483
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	357
CciI	TCATGA	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	418, 581
CviQI	GTAC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	421, 584
FaiI	YATR	7 cut(s)	172, 300, 306, 335, 419, 527, 582
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	417, 580
Fnu4HI	GCNGC	2 cut(s)	310, 472
Fsp4HI	GCNGC	2 cut(s)	310, 472
GluI	GCNGC	2 cut(s)	310, 472
GsuI	CTGGAG	2 cut(s)	278, 520
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	2 cut(s)	421, 584
HindIII	AAGCTT	3 cut(s)	285, 403, 444
HinfI	GANTC	2 cut(s)	275, 410
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	25, 46, 438
Hpy188III	TCNNGA	5 cut(s)	257, 418, 464, 479, 537
HpyAV	CCTTC	3 cut(s)	49, 68, 489
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	3 cut(s)	13, 337, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 357
Hsp92II	CATG	2 cut(s)	421, 584
Kpn2I	TCCGGA	1 cut(s)	463
Lsp1109I	GCAGC	2 cut(s)	321, 483
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	2 cut(s)	146, 353
MboII	GAAGA	5 cut(s)	10, 17, 123, 126, 284
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	5 cut(s)	214, 222, 235, 540, 546
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	3 cut(s)	65, 253, 306
MroI	TCCGGA	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	6 cut(s)	164, 455, 545, 549, 575, 586
MslI	CAYNNNNRTG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	309, 357
NlaIII	CATG	2 cut(s)	421, 584
NspV	TTCGAA	1 cut(s)	156
PacI	TTAATTAA	1 cut(s)	549
PagI	TCATGA	1 cut(s)	417
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	275, 410
PkrI	GCNGC	2 cut(s)	311, 473
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	357
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	6 cut(s)	164, 455, 545, 549, 575, 586
SatI	GCNGC	2 cut(s)	310, 472
ScrFI	CCNGG	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	11, 346
SfuI	TTCGAA	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	5 cut(s)	214, 222, 235, 540, 546
SsiI	CCGC	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	156
TasI	AATT	5 cut(s)	214, 222, 235, 540, 546
TfiI	GAWTC	2 cut(s)	275, 410
Tru1I	TTAA	6 cut(s)	164, 455, 545, 549, 575, 586
Tru9I	TTAA	6 cut(s)	164, 455, 545, 549, 575, 586
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	2 cut(s)	309, 471
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	3 cut(s)	214, 235, 540
XmnI	GAANNNNTTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.