AT5G41380

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012159
Physical Location & Seq
Reverse (-)
16561278 .. 16563732
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41380.1

Sequence Viewer

Length: 924 bp
ATGGATTCTTCTACAGATTTCTATATCTTTGATGGTTCGTCTTCATCTTCTTCCTCAGTGTTCAGAAATTCGAGTCCAGATATGTTTTCTTCAGACACAACAACAACTACAGATTTGTTCTGCAACAATGAACTTTACTCTGTTGAAGAATCACTCAACATTTTTGACCATTTTACCCCTCAACACATTCTCTCTTCATCACCTCCAAGTGATCTTCTCGGAACCCTAAGTCTCTCTCAGCATATTCCCACCGGATTATATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCGTCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGGCGGCAACAATGGCACGAAGCTACAGTACCATAGAGAATTCAGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCGAGGGGAAACAAACTCAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAACCTTAGTTACAATAACTTGAGCTCCCCGGAAAATGCTTTCTTTTCCAGTCAGATGCGACGTGTCTACAGCACCGGAGATTTGCAGAATAATATGGAAATGCAGAGATCGTCTGAAAACTCAACGATGCCGTTTTCAGAGGAACAGAACTTCAAGGTGGGACGTTACAGTGCAGAAGAACGTAAAGAGAAAATATCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACCAAAACTATTAAGTATGCATGCCGGAAAACATTGGCGGACAGTAGACCTCGAATACGTGGTAGATTTGCACGCAATGACGAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGGGCTCCATGAGAAAGAGGAAGCTTCTGTGAGCAGCTTTGTGGTGCAACAACCTCTCTTGCACTACACAACTTCCTCTTCCTTTTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

307

Amino Acids

35.08

Weight (kDa)

5.26

Isoelectric Point (pI)

67.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 215 - 257 1.8e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 528, 739
AciI CCGC 2 cut(s) 332, 731
AcsI RAATTY 3 cut(s) 67, 265, 367
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 358, 665
AfiI CCNNNNNNNGG 2 cut(s) 819, 918
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 5 cut(s) 146, 439, 462, 616, 800
AjiI CACGTC 1 cut(s) 524
AluBI AGCT 7 cut(s) 351, 393, 486, 671, 817, 854, 867
AluI AGCT 7 cut(s) 351, 393, 486, 671, 817, 854, 867
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 399, 864
ApoI RAATTY 3 cut(s) 67, 265, 367
Asp700I GAANNNNTTC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 192
BanII GRGCYC 2 cut(s) 488, 837
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 411, 876
BccI CCATC 3 cut(s) 26, 445, 824
BceAI ACGGC 2 cut(s) 278, 577
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 1 cut(s) 236
BfmI CTRYAG 4 cut(s) 12, 108, 352, 529
BisI GCNGC 3 cut(s) 333, 400, 865
BlsI GCNGC 3 cut(s) 334, 401, 866
Bme1390I CCNGG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 524
BmiI GGNNCC 3 cut(s) 223, 432, 836
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 2 cut(s) 507, 579
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 2 cut(s) 251, 536
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 819, 918
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 775
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 835
BseLI CCNNNNNNNGG 2 cut(s) 819, 918
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 4 cut(s) 69, 251, 285, 440
BseNI ACTGG 1 cut(s) 510
BseXI GCAGC 2 cut(s) 411, 876
BsgI GTGCAG 1 cut(s) 654
Bsh1285I CGRYCG 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 4 cut(s) 252, 491, 537, 718
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 2 cut(s) 819, 918
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 488, 837
Bsp143I GATC 2 cut(s) 211, 569
BspACI CCGC 2 cut(s) 332, 731
BspCNI CTCAG 4 cut(s) 68, 250, 284, 439
BspLI GGNNCC 3 cut(s) 223, 432, 836
BsrDI GCAATG 1 cut(s) 775
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 2 cut(s) 211, 569
BssNI GRCGYC 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 320, 356, 632, 737
Bst6I CTCTTC 2 cut(s) 199, 913
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 715, 766
BstDEI CTNAG 6 cut(s) 55, 227, 237, 271, 426, 467
BstF5I GGATG 1 cut(s) 835
BstKTI GATC 2 cut(s) 214, 572
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 211, 569
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 2 cut(s) 341, 399
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 4 cut(s) 12, 108, 352, 529
BstV1I GCAGC 2 cut(s) 411, 876
BstV2I GAAGAC 1 cut(s) 33
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 835
BtsIMutI CAGTG 2 cut(s) 63, 637
Cac8I GCNNGC 2 cut(s) 715, 766
CseI GACGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 357, 664
CviAII CATG 2 cut(s) 714, 839
CviJI RGCY 8 cut(s) 351, 393, 486, 671, 817, 835, 854, 867
CviKI_1 RGCY 8 cut(s) 351, 393, 486, 671, 817, 835, 854, 867
CviQI GTAC 2 cut(s) 357, 664
DdeI CTNAG 6 cut(s) 55, 227, 237, 271, 426, 467
DpnI GATC 2 cut(s) 213, 571
DpnII GATC 2 cut(s) 211, 569
Eam1104I CTCTTC 2 cut(s) 199, 913
EarI CTCTTC 2 cut(s) 199, 913
EciI GGCGGA 1 cut(s) 746
Ecl136II GAGCTC 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 488, 837
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 2 cut(s) 488, 837
FaeI CATG 2 cut(s) 717, 842
FaqI GGGAC 1 cut(s) 636
FatI CATG 2 cut(s) 713, 838
FblI GTMKAC 2 cut(s) 528, 739
Fnu4HI GCNGC 3 cut(s) 333, 400, 865
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 2 cut(s) 488, 837
Fsp4HI GCNGC 3 cut(s) 333, 400, 865
GluI GCNGC 3 cut(s) 333, 400, 865
HapII CCGG 4 cut(s) 252, 491, 537, 718
HgaI GACGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 2 cut(s) 717, 842
HindIII AAGCTT 2 cut(s) 391, 852
HinfI GANTC 5 cut(s) 5, 73, 149, 455, 809
HpaII CCGG 4 cut(s) 252, 491, 537, 718
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 529, 740
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 2 cut(s) 529, 740
Hpy99I CGWCG 3 cut(s) 293, 320, 525
HpyCH4III ACNGT 4 cut(s) 320, 356, 632, 737
HpyCH4IV ACGT 4 cut(s) 523, 625, 643, 751
HpyCH4V TGCA 9 cut(s) 123, 385, 547, 565, 635, 713, 764, 877, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 399
HpyF3I CTNAG 6 cut(s) 55, 227, 237, 271, 426, 467
HpySE526I ACGT 4 cut(s) 523, 625, 643, 751
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 2 cut(s) 717, 842
Kzo9I GATC 2 cut(s) 211, 569
LmnI GCTCC 2 cut(s) 491, 840
Lsp1109I GCAGC 2 cut(s) 411, 876
LweI GCATC 2 cut(s) 507, 579
MaeII ACGT 4 cut(s) 523, 625, 643, 751
MaeIII GTNAC 2 cut(s) 470, 626
MalI GATC 2 cut(s) 213, 571
MboI GATC 2 cut(s) 211, 569
MhlI GDGCHC 2 cut(s) 488, 837
MluCI AATT 5 cut(s) 67, 265, 367, 403, 824
MlyI GAGTC 2 cut(s) 82, 803
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 9 cut(s) 64, 189, 213, 406, 595, 753, 841, 894, 916
Mph1103I ATGCAT 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 4 cut(s) 252, 491, 537, 718
MspR9I CCNGG 1 cut(s) 491
MwoI GCNNNNNNNGC 2 cut(s) 341, 399
NciI CCSGG 1 cut(s) 491
NdeII GATC 2 cut(s) 211, 569
NlaIII CATG 2 cut(s) 717, 842
NlaIV GGNNCC 3 cut(s) 223, 432, 836
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 717
PaeI GCATGC 1 cut(s) 717
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 5, 149, 455
PflFI GACNNNGTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 334, 401, 866
PleI GAGTC 2 cut(s) 81, 803
PpsI GAGTC 2 cut(s) 81, 803
Ppu21I YACGTR 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 488
PspN4I GGNNCC 3 cut(s) 223, 432, 836
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 2 cut(s) 358, 665
RsaNI GTAC 2 cut(s) 357, 664
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 333, 400, 865
Sau3AI GATC 2 cut(s) 211, 569
SchI GAGTC 2 cut(s) 82, 803
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 2 cut(s) 488, 837
SfaNI GCATC 2 cut(s) 507, 579
SfcI CTRYAG 4 cut(s) 12, 108, 352, 529
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
SphI GCATGC 1 cut(s) 717
Sse9I AATT 5 cut(s) 67, 265, 367, 403, 824
SsiI CCGC 2 cut(s) 332, 731
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 320, 356, 632, 737
TaiI ACGT 4 cut(s) 526, 628, 646, 754
TaqI TCGA 4 cut(s) 71, 315, 411, 745
TaqII GACCGA 1 cut(s) 397
TasI AATT 5 cut(s) 67, 265, 367, 403, 824
TatI WGTACW 1 cut(s) 663
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 3 cut(s) 5, 149, 455
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 63, 637
TseI GCWGC 2 cut(s) 399, 864
TspDTI ATGAA 3 cut(s) 33, 144, 186
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 63, 637
Tth111I GACNNNGTC 1 cut(s) 293
XapI RAATTY 3 cut(s) 67, 265, 367
XceI RCATGY 1 cut(s) 717
XmiI GTMKAC 2 cut(s) 528, 739
XmnI GAANNNNTTC 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.