RLG00000003963

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012159
Physical Location & Seq
Reverse (-)
54772949 .. 54775181
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003963

Sequence Viewer

Length: 864 bp
ATGTCTTCTGATCTCTTTGTTGACGATGCCTCCTTCTACCGCCATTCCTATGAAACAGACCTCTTGTCTGACCCCTTCTCTCCTTTCTCAGACTCAGCCCTTGACATCCTTCAAGCAATCTCTGACCACCGAAACGTACAAAACCCAGTTGAGGATCAGCCTCATTCTTTTGAGCAAAGCTCCCCAAATCCTGTTTCTCCTTCGCCCCCAAGTTATCAATCGGAAAGTTTGAGCCTTTACCAAGCAACCCATCCGGGCCCTCTTGAAAATGGTCCCAGTTTGGGAGATGCCTTGGGAAATTTCTCAGCTTTGGACATTTTAGGGGAGGTGAAAACTGAGCAATGTCATGTGGGTTTTGACCAGAATGCTTATAATTACAACACCCAACACGCTTTTTCTCCTCACAGTTACAGTGGTGGTGCTGAAAATGTGGCCAAATTTATGCAGAGGAGCTATAGCAGCAACTCCTTTGACGGAAAGCCTGGCTTTGTTTTCCAACCTCGCTTCGATTCTCTCATGGAATCCCCAAATTTCCAGAACCAAGCAGCCTCCTTGAGCTCACCTGAGAGCAGCTACCTGACTAGTCAAATGAGAAGGGTTTCCAGCACTGGAGATTTACAAAATTTCAAAACTGCTCGTAATCCTCGAGAGAGCTCGGCCATGGAGGAAGCTGGGAGCTTTAAGATGGGGAAGTACAGTGCAGAGGAGAGAAAAGAGAGGATTTCAAAGTACAGAGCTAAGAGATCACAGAGAAACTTCAACAAGACTATCAAGGTATGCTTTTTTCGAAGAACTGATTTTTCCTCAATAACCAAAAACGCCATTTTTTTTTTCTTCATAGTTTTATTACGTGTTGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

288

Amino Acids

32.27

Weight (kDa)

5.99

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AciI CCGC 1 cut(s) 40
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 432, 657
AcsI RAATTY 4 cut(s) 298, 437, 529, 622
AfaI GTAC 3 cut(s) 138, 695, 731
AfiI CCNNNNNNNGG 2 cut(s) 151, 281
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 5 cut(s) 113, 266, 628, 726, 760
AhdI GACNNNNNGTC 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 9 cut(s) 180, 308, 453, 558, 573, 654, 671, 678, 737
AluI AGCT 9 cut(s) 180, 308, 453, 558, 573, 654, 671, 678, 737
Alw21I GWGCWC 2 cut(s) 560, 656
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 3 cut(s) 256, 432, 657
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 459, 545, 570
ApoI RAATTY 4 cut(s) 298, 437, 529, 622
Asp700I GAANNNNTTC 1 cut(s) 598
AspS9I GGNCC 3 cut(s) 256, 257, 272
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 340, 552
AsuII TTCGAA 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 3 cut(s) 260, 560, 656
Bbv12I GWGCWC 2 cut(s) 560, 656
BbvI GCAGC 3 cut(s) 471, 557, 582
BccI CCATC 2 cut(s) 258, 679
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 3 cut(s) 460, 546, 571
BlsI GCNGC 3 cut(s) 461, 547, 572
Bme1390I CCNGG 2 cut(s) 255, 483
Bme18I GGWCC 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 256, 257, 272
BmiI GGNNCC 2 cut(s) 258, 274
BmrFI CCNGG 2 cut(s) 255, 483
BmrI ACTGGG 2 cut(s) 140, 270
BmsI GCATC 2 cut(s) 16, 277
BmuI ACTGGG 2 cut(s) 140, 270
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 787
BpuEI CTTGAG 1 cut(s) 574
BpuMI CCSGG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 851
BsaJI CCNNGG 2 cut(s) 291, 660
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 281
Bse1I ACTGG 3 cut(s) 146, 276, 613
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 291, 660
BseGI GGATG 2 cut(s) 105, 250
BseLI CCNNNNNNNGG 2 cut(s) 151, 281
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 5 cut(s) 102, 108, 318, 327, 555
BseNI ACTGG 3 cut(s) 146, 276, 613
BseRI GAGGAG 3 cut(s) 390, 463, 719
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 3 cut(s) 471, 557, 582
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 3 cut(s) 258, 434, 659
BsiHKAI GWGCWC 2 cut(s) 560, 656
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 151, 281
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 3 cut(s) 258, 434, 659
BsoBI CYCGRG 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 787
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 260, 560, 656
Bsp143I GATC 3 cut(s) 10, 154, 743
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 258, 434, 659
BspCNI CTCAG 5 cut(s) 101, 107, 317, 328, 556
BspLI GGNNCC 2 cut(s) 258, 274
BspPI GGATC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 3 cut(s) 146, 276, 613
BssECI CCNNGG 2 cut(s) 291, 660
BssMI GATC 3 cut(s) 10, 154, 743
BssT1I CCWWGG 2 cut(s) 291, 660
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 407, 413, 698
BstBAI YACGTR 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 787
BstDEI CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 105, 250
BstKTI GATC 3 cut(s) 13, 157, 746
BstMBI GATC 3 cut(s) 10, 154, 743
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 253, 481
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 471, 557, 582
BsuRI GGCC 3 cut(s) 258, 434, 659
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 2 cut(s) 105, 250
BtsIMutI CAGTG 3 cut(s) 418, 606, 703
Cfr13I GGNCC 3 cut(s) 256, 257, 272
Csp6I GTAC 3 cut(s) 137, 694, 730
CviAII CATG 3 cut(s) 347, 517, 661
CviQI GTAC 3 cut(s) 137, 694, 730
DdeI CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
DpnI GATC 3 cut(s) 12, 156, 745
DpnII GATC 3 cut(s) 10, 154, 743
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 432, 657
Eam1105I GACNNNNNGTC 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 558, 654
Eco130I CCWWGG 2 cut(s) 291, 660
Eco24I GRGCYC 3 cut(s) 260, 560, 656
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 558, 654
Eco88I CYCGRG 1 cut(s) 645
EcoICRI GAGCTC 2 cut(s) 558, 654
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 291, 660
EcoT38I GRGCYC 3 cut(s) 260, 560, 656
ErhI CCWWGG 2 cut(s) 291, 660
FaeI CATG 3 cut(s) 350, 520, 664
FaiI YATR 9 cut(s) 51, 348, 372, 443, 456, 518, 662, 778, 839
FalI AAGNNNNNCTT 4 cut(s) 470, 502, 764, 796
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 346, 516, 660
Fnu4HI GCNGC 3 cut(s) 460, 546, 571
FokI GGATG 2 cut(s) 92, 237
FriOI GRGCYC 3 cut(s) 260, 560, 656
Fsp4HI GCNGC 3 cut(s) 460, 546, 571
FspBI CTAG 1 cut(s) 582
GluI GCNGC 3 cut(s) 460, 546, 571
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 3 cut(s) 258, 434, 659
HapII CCGG 1 cut(s) 254
Hin1II CATG 3 cut(s) 350, 520, 664
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 4 cut(s) 92, 509, 521, 858
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 340, 552
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 6 cut(s) 10, 70, 91, 124, 223, 863
Hpy188III TCNNGA 3 cut(s) 263, 535, 647
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 43, 85, 119, 210, 588
HpyCH4III ACNGT 3 cut(s) 407, 413, 698
HpyCH4IV ACGT 2 cut(s) 135, 850
HpyCH4V TGCA 2 cut(s) 445, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 6 cut(s) 88, 94, 304, 336, 564, 738
HpySE526I ACGT 2 cut(s) 135, 850
Hsp92II CATG 3 cut(s) 350, 520, 664
Kzo9I GATC 3 cut(s) 10, 154, 743
LmnI GCTCC 3 cut(s) 185, 450, 675
Lsp1109I GCAGC 3 cut(s) 471, 557, 582
LweI GCATC 2 cut(s) 16, 277
MaeI CTAG 1 cut(s) 582
MaeII ACGT 2 cut(s) 135, 850
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 12, 156, 745
MboI GATC 3 cut(s) 10, 154, 743
MboII GAAGA 2 cut(s) 801, 826
MhlI GDGCHC 3 cut(s) 260, 560, 656
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 5 cut(s) 298, 373, 437, 529, 622
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 520, 835
Mox20I TGGCCA 1 cut(s) 434
MroXI GAANNNNTTC 1 cut(s) 598
MscI TGGCCA 1 cut(s) 434
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 434
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 255, 483
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 459
NciI CCSGG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 660
NdeII GATC 3 cut(s) 10, 154, 743
NlaIII CATG 3 cut(s) 350, 520, 664
NlaIV GGNNCC 2 cut(s) 258, 274
NmeAIII GCCGAG 1 cut(s) 635
NspV TTCGAA 1 cut(s) 787
PaeR7I CTCGAG 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 643
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 3 cut(s) 509, 521, 858
PkrI GCNGC 3 cut(s) 461, 547, 572
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 851
PsiI TTATAA 1 cut(s) 372
Psp124BI GAGCTC 2 cut(s) 560, 656
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 258, 274
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 256, 257, 272
RsaI GTAC 3 cut(s) 138, 695, 731
RsaNI GTAC 3 cut(s) 137, 694, 730
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 2 cut(s) 560, 656
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 3 cut(s) 460, 546, 571
Sau3AI GATC 3 cut(s) 10, 154, 743
Sau96I GGNCC 3 cut(s) 256, 257, 272
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 255, 483
SduI GDGCHC 3 cut(s) 260, 560, 656
SfaNI GCATC 2 cut(s) 16, 277
SfcI CTRYAG 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 645
SfuI TTCGAA 1 cut(s) 787
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 553, 645
SmoI CTYRAG 2 cut(s) 553, 645
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 5 cut(s) 298, 373, 437, 529, 622
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 2 cut(s) 560, 656
StyD4I CCNGG 2 cut(s) 253, 481
StyI CCWWGG 2 cut(s) 291, 660
TaaI ACNGT 3 cut(s) 407, 413, 698
TaiI ACGT 2 cut(s) 138, 853
TaqI TCGA 3 cut(s) 507, 646, 787
TasI AATT 5 cut(s) 298, 373, 437, 529, 622
TatI WGTACW 2 cut(s) 693, 729
TfiI GAWTC 3 cut(s) 509, 521, 858
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 3 cut(s) 418, 613, 703
TseI GCWGC 3 cut(s) 459, 545, 570
TspDTI ATGAA 2 cut(s) 66, 826
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 3 cut(s) 418, 613, 703
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 4 cut(s) 298, 437, 529, 622
XhoI CTCGAG 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.