MD14G1108900.v1.1

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012159
Physical Location & Seq
Reverse (-)
17071492 .. 17073214
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1108900.v1.1.491

Sequence Viewer

Length: 942 bp
ATGTCCTCCTCCGAAATGGCGGACCAGCAGTTCTTCTCCGAGCCATTCTCTCCCCTCTCGGACATTGACCTCCTCCAACTCCAAGCAATCTCCGACCAGCAAAGCCATCAAAACGCAACTGACCATAACTCTCCGTCTCTCCTCTCTTCTTCTCCCCCAAGTTACCAGCTCGAAACTCTAAGCCTTTACCGGCAAACCCAGTTGCACCAAACGGAACAAAATTGTCCAAATTTGCCAATTGGGTGGCCGAATTTATCTCTTTTTGATGCTCAGGAGGTTAAAACTGAAGAATTTCATCAAGTTCTTGAGCCTCATAGCTATGGCGGGGCGGAGAATGTCGCAAGGTTTATTCAGAGGAGCTACAGCAGCAAATGCTTTGATGGAAATAATAACAAGCCTAGATTTTACTTCCAGCCGAGCTTTGATTCTCTCATGGAGTCCCCAAGTTTTCAGGACCAAGCTTTGAGCTTGAGCTCTCCGGAAAGCCGCCTTTTGCCTGGTCAAATGAGAAGGGTATCCAGCACTGGTGATTTGCAAAATTTGCGAACAAATCGTGCTCCCAGAGAGAGCTCAGTGATGGAAGAAGCAGCTGCAAACTTCAAAACGGGGAGGTACAGTGCAGAAGAGAGGAAAGAGAGAATCTCAAAGTACAGAGCCAAAAGGTCACAGAGAAACTTCAACAAAACAATTAAGTATGCATGTCGAAAAACACTAGCAGACAAACGACCCCGCATACGTGGCAGATTTGCACGTAACGACGAGACCGGTGAGATTCTCAAAGCTGCATGTTCAAGTACCAGAGAAGAAGACGGAGATGAGCTCTGGGTTGAAGGGTTCAATGTAGAAGAGGAAGAGATGAATGCAACAGTAAGAGGAGGAGGAGGAGGAGGACAGTTTATGAGCAATTTTGGAGCTACCCAGCTTCAGTACTATGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

314

Amino Acids

35.47

Weight (kDa)

5.7

Isoelectric Point (pI)

68.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 210 - 252 5.3e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 5 cut(s) 20, 324, 329, 487, 730
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 4 cut(s) 229, 250, 290, 538
AcuI CTGAAG 2 cut(s) 306, 908
AfaI GTAC 4 cut(s) 614, 650, 796, 929
AgeI ACCGGT 1 cut(s) 764
AgsI TTSAA 5 cut(s) 601, 679, 792, 830, 838
AjnI CCWGG 1 cut(s) 496
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
Alw21I GWGCWC 4 cut(s) 476, 559, 572, 822
Alw26I GTCTC 2 cut(s) 141, 755
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 4 cut(s) 366, 587, 590, 782
ApoI RAATTY 4 cut(s) 229, 250, 290, 538
AsiGI ACCGGT 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 22, 454
AsuHPI GGTGA 2 cut(s) 539, 779
AvaII GGWCC 2 cut(s) 22, 454
BanII GRGCYC 3 cut(s) 476, 572, 822
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 4 cut(s) 476, 559, 572, 822
BbvI GCAGC 4 cut(s) 378, 577, 599, 769
BccI CCATC 3 cut(s) 114, 374, 571
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 141, 755
BfaI CTAG 2 cut(s) 399, 713
BfmI CTRYAG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 5 cut(s) 367, 487, 588, 591, 783
BlsI GCNGC 5 cut(s) 368, 488, 589, 592, 784
BmcAI AGTACT 1 cut(s) 929
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 22, 454
BmgT120I GGNCC 2 cut(s) 22, 454
BmrFI CCNGG 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 6 cut(s) 32, 64, 626, 658, 804, 836
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 326, 490
BsaAI YACGTR 2 cut(s) 737, 752
BsaI GGTCTC 1 cut(s) 755
BsaWI WCCGGW 2 cut(s) 478, 764
BsaXI ACNNNNNCTCC 2 cut(s) 601, 631
Bse118I RCCGGY 2 cut(s) 189, 764
Bse1I ACTGG 2 cut(s) 199, 529
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 941
BseMII CTCAG 2 cut(s) 284, 585
BseNI ACTGG 2 cut(s) 199, 529
BseRI GAGGAG 8 cut(s) 62, 131, 370, 888, 891, 894, 897, 900
BseXI GCAGC 4 cut(s) 378, 577, 599, 769
BseYI CCCAGC 1 cut(s) 918
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 1 cut(s) 247
BshTI ACCGGT 1 cut(s) 764
BsiHKAI GWGCWC 4 cut(s) 476, 559, 572, 822
BsiSI CCGG 3 cut(s) 190, 479, 765
BslFI GGGAC 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 141, 755
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 755
Bsp1286I GDGCHC 4 cut(s) 476, 559, 572, 822
Bsp13I TCCGGA 1 cut(s) 478
BspACI CCGC 5 cut(s) 20, 324, 329, 487, 730
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 283, 584
BspEI TCCGGA 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 755
BsrFI RCCGGY 2 cut(s) 189, 764
BsrI ACTGG 2 cut(s) 199, 529
BssAI RCCGGY 2 cut(s) 189, 764
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 3 cut(s) 617, 868, 894
Bst6I CTCTTC 4 cut(s) 151, 618, 840, 846
BstAPI GCANNNNNTGC 2 cut(s) 372, 541
BstBAI YACGTR 2 cut(s) 737, 752
BstDEI CTNAG 3 cut(s) 179, 270, 571
BstF5I GGATG 1 cut(s) 941
BstMAI GTCTC 2 cut(s) 141, 755
BstMWI GCNNNNNNNGC 4 cut(s) 366, 372, 541, 738
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 2 cut(s) 702, 789
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 361
BstV1I GCAGC 4 cut(s) 378, 577, 599, 769
BstV2I GAAGAC 1 cut(s) 813
BstXI CCANNNNNNTGG 1 cut(s) 243
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 941
BtsIMutI CAGTG 3 cut(s) 522, 579, 622
Cfr10I RCCGGY 2 cut(s) 189, 764
Cfr13I GGNCC 2 cut(s) 22, 454
Csp6I GTAC 4 cut(s) 613, 649, 795, 928
CspAI ACCGGT 1 cut(s) 764
CviAII CATG 3 cut(s) 433, 699, 786
CviQI GTAC 4 cut(s) 613, 649, 795, 928
DdeI CTNAG 3 cut(s) 179, 270, 571
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 4 cut(s) 151, 618, 840, 846
EarI CTCTTC 4 cut(s) 151, 618, 840, 846
EciI GGCGGA 2 cut(s) 35, 344
Ecl136II GAGCTC 3 cut(s) 474, 570, 820
Eco24I GRGCYC 3 cut(s) 476, 572, 822
Eco31I GGTCTC 1 cut(s) 755
Eco47I GGWCC 2 cut(s) 22, 454
Eco53kI GAGCTC 3 cut(s) 474, 570, 820
Eco57I CTGAAG 2 cut(s) 306, 908
EcoICRI GAGCTC 3 cut(s) 474, 570, 820
EcoRII CCWGG 1 cut(s) 496
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 3 cut(s) 476, 572, 822
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 3 cut(s) 436, 702, 789
FaqI GGGAC 1 cut(s) 424
FatI CATG 3 cut(s) 432, 698, 785
FauI CCCGC 2 cut(s) 317, 737
Fnu4HI GCNGC 5 cut(s) 367, 487, 588, 591, 783
FriOI GRGCYC 3 cut(s) 476, 572, 822
Fsp4HI GCNGC 5 cut(s) 367, 487, 588, 591, 783
FspBI CTAG 2 cut(s) 399, 713
GluI GCNGC 5 cut(s) 367, 487, 588, 591, 783
GsaI CCCAGC 1 cut(s) 922
HaeIII GGCC 1 cut(s) 247
HapII CCGG 3 cut(s) 190, 479, 765
Hin1II CATG 3 cut(s) 436, 702, 789
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 4 cut(s) 425, 437, 639, 772
HpaII CCGG 3 cut(s) 190, 479, 765
HphI GGTGA 2 cut(s) 539, 779
Hpy188I TCNGA 5 cut(s) 13, 40, 61, 94, 354
Hpy188III TCNNGA 4 cut(s) 272, 305, 452, 479
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 2 cut(s) 504, 824
HpyCH4III ACNGT 3 cut(s) 617, 868, 894
HpyCH4IV ACGT 2 cut(s) 736, 751
HpyCH4V TGCA 8 cut(s) 205, 535, 593, 620, 698, 749, 785, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 366, 372, 541, 738
HpyF3I CTNAG 3 cut(s) 179, 270, 571
HpySE526I ACGT 2 cut(s) 736, 751
Hsp92II CATG 3 cut(s) 436, 702, 789
Kpn2I TCCGGA 1 cut(s) 478
LmnI GCTCC 3 cut(s) 357, 562, 911
Lsp1109I GCAGC 4 cut(s) 378, 577, 599, 769
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 399, 713
MaeII ACGT 2 cut(s) 736, 751
MaeIII GTNAC 3 cut(s) 161, 663, 752
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 4 cut(s) 476, 559, 572, 822
MluCI AATT 8 cut(s) 220, 229, 237, 250, 290, 538, 687, 904
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 100, 117
Mph1103I ATGCAT 1 cut(s) 700
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 279, 690
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 3 cut(s) 190, 479, 765
MspR9I CCNGG 1 cut(s) 498
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 366, 372, 541, 738
NlaIII CATG 3 cut(s) 436, 702, 789
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 663
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 2 cut(s) 702, 789
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 425, 639, 772
PinAI ACCGGT 1 cut(s) 764
PkrI GCNGC 5 cut(s) 368, 488, 589, 592, 784
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 2 cut(s) 737, 752
Psp124BI GAGCTC 3 cut(s) 476, 572, 822
Psp6I CCWGG 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 918
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 2 cut(s) 22, 454
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 4 cut(s) 614, 650, 796, 929
RsaNI GTAC 4 cut(s) 613, 649, 795, 928
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 3 cut(s) 476, 572, 822
SaqAI TTAA 2 cut(s) 279, 690
SatI GCNGC 5 cut(s) 367, 487, 588, 591, 783
Sau96I GGNCC 2 cut(s) 22, 454
ScaI AGTACT 1 cut(s) 929
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 4 cut(s) 476, 559, 572, 822
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 2 cut(s) 22, 454
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 305, 469
SmoI CTYRAG 2 cut(s) 305, 469
Sse9I AATT 8 cut(s) 220, 229, 237, 250, 290, 538, 687, 904
SsiI CCGC 5 cut(s) 20, 324, 329, 487, 730
SspMI CTAG 2 cut(s) 399, 713
SstI GAGCTC 3 cut(s) 476, 572, 822
StyD4I CCNGG 1 cut(s) 496
TaaI ACNGT 3 cut(s) 617, 868, 894
TaiI ACGT 2 cut(s) 739, 754
TaqI TCGA 2 cut(s) 171, 703
TasI AATT 8 cut(s) 220, 229, 237, 250, 290, 538, 687, 904
TatI WGTACW 2 cut(s) 648, 927
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 3 cut(s) 425, 639, 772
Tru1I TTAA 2 cut(s) 279, 690
Tru9I TTAA 2 cut(s) 279, 690
TscAI CASTG 3 cut(s) 529, 579, 622
TseFI GTSAC 1 cut(s) 663
TseI GCWGC 4 cut(s) 366, 587, 590, 782
Tsp45I GTSAC 1 cut(s) 663
TspDTI ATGAA 2 cut(s) 284, 872
TspGWI ACGGA 3 cut(s) 123, 227, 825
TspRI CASTG 3 cut(s) 529, 579, 622
VpaK11BI GGWCC 2 cut(s) 22, 454
XapI RAATTY 4 cut(s) 229, 250, 290, 538
XceI RCATGY 2 cut(s) 702, 789
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 399, 713
ZrmI AGTACT 1 cut(s) 929
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.