Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012159

Physical Location & Seq

Genomic Coordinates Reverse (-)

11087568 .. 11089769

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G104100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCTTCCTCTGATCTCTACGTTCTTGATGACTCCTTCTTCCGCCATTCTTCAAGCTCAGAAATGGCTTCTTATGAACCAGACCAGTTCTTCTCCGAGCCATTCTCTCCCTTCTCAGACATTGACATCCTCCAAGCAATCTCAGATCACCAAAGCAACCAAAACCCAGTTGAAAACCAGTCTCATCATAATAATTCACTCGACCAAAGCTCTCCTACAATCCTCTCTTCTTCTCCCCCAAGTTACCAATTGGAAAGCTTGAGCCTTTGCCAAGCAACCCATCTGAACCCTCTGGATCAAAACTGCACAAATTTGGCAAATGGGTTGCCAAATTTCTCTGCTTTCGATGCTCTGGAAGTCAAAACTGAGCAATGCCATTTAGCTTTTGACCAAAACGCTTATAATAATAGCCAAGTTTTTGGTCCTCATAGCTACAGTGGTGCAGAGAATGTGGCAAAGTTTATGCAGAGGAGTTTTAGCAGCAACTCCTTCGATGGCAAGCCTGGTGTTGTCTTCCAACCTTGCTTTGATTCTCTCATGGAATCTTCAACTTTTCAAAACCAAGCCTTGAGCTCTCCTGAAAACAGCTTTTTAGCTGGCCAAATGAGAAGGGTTTCCAGCACTGGAGATTTGCAAAATTTTAGAACGGCTCGCAATCCGAGAGAGAGCTCAGTGATGGAGGAAGCTGCCGCAAACTTCAAAATGGGCAGGTACAGCGCAGAAGAGAGGAAAGAGAGAATTTCAAAGTACAGAGCCAAGAGGTCGCAGAGAAACTTCAACAAGACCATTAAGTATGCATGTCGAAAAACACTAGCGGATAACCGACCCCGCATACGTGGCAGATTTGCACGCAACGACGAAACTGGTGAGGTTCTCAAGGCTGCATGTTCAAGTAACAGAGAAGAAGACGGAGATGAACTCTGGGTCGAAGGGTTCAATGTGGAAGAAGAAGAGAATGGAACAGTGAGAGGAGGAGGAGGAGGACAGTTCATGAACAATTTTGGAGCAACTCAGTTTCAGTACTATGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

345

Amino Acids

38.6

Weight (kDa)

5.13

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63820 AT5G41380
fragaria_vesca	FvH4_1g29660 FvH4_5g02850
malus_domestica	MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica	Prupe.5G104100_v2.0.a1
pyrus_communis	pycom06g08410
rosa_chinensis	RchiOBHm_Chr7g0197051
rosa_laevigata	RLG00000003963
rosa_multiflora	Rmu_sc0003411.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258700
rosa_rugosa	Rorug07G0037300
rosa_samantha	Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana	Rw7G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	699
AciI	CCGC	4 cut(s)	43, 690, 815, 829
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	4 cut(s)	310, 331, 637, 738
AfaI	GTAC	3 cut(s)	713, 749, 1022
AgsI	TTSAA	9 cut(s)	54, 173, 549, 557, 700, 744, 778, 891, 937
AjnI	CCWGG	1 cut(s)	502
Alw21I	GWGCWC	2 cut(s)	575, 671
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	3 cut(s)	480, 686, 881
ApoI	RAATTY	4 cut(s)	310, 331, 637, 738
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	140, 878
AvaII	GGWCC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	575, 671
BbsI	GAAGAC	2 cut(s)	505, 912
Bbv12I	GWGCWC	2 cut(s)	575, 671
BbvI	GCAGC	3 cut(s)	492, 673, 868
BccI	CCATC	3 cut(s)	288, 488, 670
BceAI	ACGGC	1 cut(s)	663
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	699
BisI	GCNGC	4 cut(s)	481, 687, 690, 882
BlsI	GCNGC	4 cut(s)	482, 688, 691, 883
BmcAI	AGTACT	1 cut(s)	1022
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	505, 912
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 903, 935
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	3 cut(s)	280, 589, 860
BsaAI	YACGTR	1 cut(s)	836
Bse1I	ACTGG	5 cut(s)	85, 167, 178, 628, 868
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	6 cut(s)	72, 129, 156, 357, 684, 1025
BseNI	ACTGG	5 cut(s)	85, 167, 178, 628, 868
BseRI	GAGGAG	5 cut(s)	484, 984, 987, 990, 993
BseXI	GCAGC	3 cut(s)	492, 673, 868
BsgI	GTGCAG	2 cut(s)	289, 462
BshFI	GGCC	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	575, 671
BsmAI	GTCTC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	575, 671
Bsp143I	GATC	3 cut(s)	13, 145, 295
BspACI	CCGC	4 cut(s)	43, 690, 815, 829
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	6 cut(s)	71, 128, 155, 358, 683, 1024
BspHI	TCATGA	1 cut(s)	990
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	5 cut(s)	85, 167, 178, 628, 868
BssMI	GATC	3 cut(s)	13, 145, 295
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	437, 964, 987
Bst6I	CTCTTC	3 cut(s)	232, 717, 945
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	4 cut(s)	500, 598, 652, 850
BstDEI	CTNAG	6 cut(s)	58, 115, 142, 366, 670, 1011
BstF5I	GGATG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	3 cut(s)	16, 148, 298
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	13, 145, 295
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 714, 837
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	2 cut(s)	801, 888
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	492, 673, 868
BstV2I	GAAGAC	2 cut(s)	505, 912
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	4 cut(s)	442, 621, 678, 969
BveI	ACCTGC	1 cut(s)	699
Cac8I	GCNNGC	4 cut(s)	500, 598, 652, 850
CciI	TCATGA	1 cut(s)	990
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	3 cut(s)	712, 748, 1021
CviAII	CATG	4 cut(s)	538, 798, 885, 991
CviQI	GTAC	3 cut(s)	712, 748, 1021
DdeI	CTNAG	6 cut(s)	58, 115, 142, 366, 670, 1011
DpnI	GATC	3 cut(s)	15, 147, 297
DpnII	GATC	3 cut(s)	13, 145, 295
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	232, 717, 945
EarI	CTCTTC	3 cut(s)	232, 717, 945
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	2 cut(s)	573, 669
Eco24I	GRGCYC	2 cut(s)	575, 671
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	2 cut(s)	573, 669
EcoICRI	GAGCTC	2 cut(s)	573, 669
EcoRII	CCWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	799
EcoT38I	GRGCYC	2 cut(s)	575, 671
FaeI	CATG	4 cut(s)	541, 801, 888, 994
FatI	CATG	4 cut(s)	537, 797, 884, 990
FauI	CCCGC	1 cut(s)	836
Fnu4HI	GCNGC	4 cut(s)	481, 687, 690, 882
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	575, 671
Fsp4HI	GCNGC	4 cut(s)	481, 687, 690, 882
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	4 cut(s)	481, 687, 690, 882
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	600
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	4 cut(s)	541, 801, 888, 994
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	3 cut(s)	32, 530, 542
HphI	GGTGA	2 cut(s)	140, 878
Hpy188I	TCNGA	7 cut(s)	13, 61, 97, 118, 145, 285, 660
Hpy188III	TCNNGA	5 cut(s)	26, 293, 353, 578, 991
Hpy99I	CGWCG	1 cut(s)	860
HpyAV	CCTTC	5 cut(s)	46, 121, 499, 603, 923
HpyCH4III	ACNGT	3 cut(s)	437, 964, 987
HpyCH4IV	ACGT	2 cut(s)	21, 835
HpyCH4V	TGCA	7 cut(s)	306, 443, 466, 634, 797, 848, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 714, 837
HpyF3I	CTNAG	6 cut(s)	58, 115, 142, 366, 670, 1011
HpySE526I	ACGT	2 cut(s)	21, 835
Hsp92II	CATG	4 cut(s)	541, 801, 888, 994
HspAI	GCGC	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	13, 145, 295
LmnI	GCTCC	1 cut(s)	1004
Lsp1109I	GCAGC	3 cut(s)	492, 673, 868
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	2 cut(s)	21, 835
MaeIII	GTNAC	2 cut(s)	242, 893
MalI	GATC	3 cut(s)	15, 147, 297
MboI	GATC	3 cut(s)	13, 145, 295
MfeI	CAATTG	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	575, 671
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	7 cut(s)	193, 248, 310, 331, 637, 738, 997
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	541
Mox20I	TGGCCA	1 cut(s)	600
Mph1103I	ATGCAT	1 cut(s)	799
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	1 cut(s)	789
Msp20I	TGGCCA	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	347, 714, 837
NdeII	GATC	3 cut(s)	13, 145, 295
NlaIII	CATG	4 cut(s)	541, 801, 888, 994
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	2 cut(s)	801, 888
PagI	TCATGA	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	530, 542
PkrI	GCNGC	4 cut(s)	482, 688, 691, 883
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	836
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	2 cut(s)	575, 671
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	422
RsaI	GTAC	3 cut(s)	713, 749, 1022
RsaNI	GTAC	3 cut(s)	712, 748, 1021
SacI	GAGCTC	2 cut(s)	575, 671
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	4 cut(s)	481, 687, 690, 882
Sau3AI	GATC	3 cut(s)	13, 145, 295
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	1022
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	575, 671
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	3 cut(s)	259, 568, 875
SmoI	CTYRAG	3 cut(s)	259, 568, 875
Sse9I	AATT	7 cut(s)	193, 248, 310, 331, 637, 738, 997
SsiI	CCGC	4 cut(s)	43, 690, 815, 829
SspMI	CTAG	1 cut(s)	812
SstI	GAGCTC	2 cut(s)	575, 671
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	437, 964, 987
TaiI	ACGT	2 cut(s)	24, 838
TaqI	TCGA	5 cut(s)	201, 345, 492, 802, 927
TasI	AATT	7 cut(s)	193, 248, 310, 331, 637, 738, 997
TatI	WGTACW	2 cut(s)	747, 1020
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	2 cut(s)	530, 542
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	4 cut(s)	442, 628, 678, 969
TseI	GCWGC	3 cut(s)	480, 686, 881
TspDTI	ATGAA	4 cut(s)	90, 930, 979, 1007
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	4 cut(s)	442, 628, 678, 969
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	4 cut(s)	310, 331, 637, 738
XceI	RCATGY	2 cut(s)	801, 888
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	1 cut(s)	812
ZrmI	AGTACT	1 cut(s)	1022
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.