Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009222

Physical Location & Seq

Genomic Coordinates Forward (+)

23993477 .. 23995509

Gene Structure 2033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATTGAGACGGTTAAACACCTGATCGGCTCCGGTGGTCCCAGCGGATTCGGGTCAAGATCCACCGCCGATCATGTCACTTGTAATTCTGATCTCCGTTCTCTAACTGCCATCATCACTGGCGCGACGTCGGGGATAGGAGCTGAGACGGCGCGTGTTCTTGCTAAGCGTGGCGCAAGACTTGTGCTTCCGGCTAGAAGCGTCAAAACCGCCGAGGAAACAAAGGCTCGTATACTGTCGGAGTTTCCTGATGCGGAGATCATCGTTATGCATCTTGATCTCAGCTCACTTACCTCTGTTCGTCGATTCGTGGACGATTTCGAATCTCTCAATCTCCCACTCAACATCCTCATAAACAATGCTGGGAAATATGCGCATAAGCATGCCCTCTCTGAGGACGGTGTGGAGATGACCTTCGCTACTAATTATCTCGGCCATTTTCTGCTGACTAAACTGCTGTTAAAGAAGATGATTGAAACGGCGGCACAAACCGGCGTGCAAGGCCGTATCGTCAACGTCACGTCCGTCGTCCATAGCTGGTTTTCCGGTGATATGTTGCAATATCTCGCCGATATCTCACGAAACAATAGAAATTACGACGCGACTCGAGCCTACGCTCTCTCCAAGCTCGCCAACGTGCTCCACACTGTTGAGCTATCACGGCTTCTCCATAAAATGGATGCGAATGTGACGGCCAATTGTGTTCATCCTGGTATCGTGAAAACCCGTCTCACAAGAGATCGAGAAGGCGTCGTCACTGATTTAGTGTTTTTCTTGACATCCAAGCTATTGAAGTCTGTTCCTCAGGCAGCAGCTACGACATGTTACGTGGCAACAAGTCCAAGATTGAGGAACGTGTGTGGCAAGTACTTCTCCGACTGCAACGAAGCTAGGTCATCTAAATCCGGGTCATGCAATCTCAAAGCTCAGAGACTCTGGACTGCTTCTGACTTGTTGGTTTCTCCACCTAATTCCACTACCAATCTTTCTCATACCTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

334

Amino Acids

36.38

Weight (kDa)

9.39

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	36 - 177	3.1e-27	short chain dehydrogenase
KR	PF08659	36 - 152	3.4e-10	KR domain
adh_short_C2	PF13561	41 - 251	1.6e-17	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64590 AT4G24050 AT4G24050
fragaria_vesca	FvH4_5g11450 FvH4_5g11450 FvH4_5g11450
malus_domestica	MD06G1113700.v1.1 MD14G1134700.v1.1
prunus_persica	Prupe.5G126400_v2.0.a1 Prupe.5G126400_v2.0.a1
pyrus_communis	pycom06g10620
rosa_chinensis	RchiOBHm_Chr7g0186391
rosa_laevigata	RLG00000004847
rosa_multiflora	Rmu_sc0000645.1_g000045
rosa_roxburghii	Rroxscaffold_3G00268170
rosa_rugosa	Rorug06G0473800 Rorug06G0473900
rosa_samantha	Rh7AG067500 Rh7CG080500 Rh7DG081100
rosa_wichuraiana	Rw7G006760 Rw7G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	232
AccII	CGCG	3 cut(s)	125, 154, 602
AciI	CCGC	5 cut(s)	45, 66, 210, 254, 482
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	2 cut(s)	433, 693
AcyI	GRCGYC	2 cut(s)	128, 750
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	2 cut(s)	394, 676
AflIII	ACRYGT	2 cut(s)	821, 855
AgsI	TTSAA	2 cut(s)	476, 793
AjiI	CACGTC	1 cut(s)	522
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	9 cut(s)	143, 285, 537, 628, 655, 787, 815, 890, 926
AluI	AGCT	9 cut(s)	143, 285, 537, 628, 655, 787, 815, 890, 926
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	4 cut(s)	2, 140, 734, 925
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	433, 502, 693
ApeKI	GCWGC	2 cut(s)	809, 812
AspLEI	GCGC	4 cut(s)	125, 154, 176, 376
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	907
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	321
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	821, 824
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	5 cut(s)	165, 489, 495, 677, 708
BciT130I	CCWGG	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	907
BcoDI	GTCTC	4 cut(s)	2, 140, 734, 925
BfaI	CTAG	2 cut(s)	195, 891
BisI	GCNGC	3 cut(s)	483, 810, 813
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	484, 811, 814
BmcAI	AGTACT	1 cut(s)	869
Bme1390I	CCNGG	2 cut(s)	711, 907
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	606
BmgBI	CACGTC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	31, 40
BmrFI	CCNGG	2 cut(s)	711, 907
BmsI	GCATC	3 cut(s)	241, 280, 670
Bpu1102I	GCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	907
BsaAI	YACGTR	1 cut(s)	829
BsaHI	GRCGYC	2 cut(s)	128, 750
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	2 cut(s)	32, 545
BsaXI	ACNNNNNCTCC	4 cut(s)	605, 635, 651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 676
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	124
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	345, 685, 706, 779
BseLI	CCNNNNNNNGG	2 cut(s)	394, 676
BseMII	CTCAG	5 cut(s)	135, 295, 384, 818, 941
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	821, 824
BseYI	CCCAGC	2 cut(s)	41, 362
Bsh1236I	CGCG	3 cut(s)	125, 154, 602
BshFI	GGCC	3 cut(s)	435, 504, 695
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	5 cut(s)	33, 191, 492, 546, 906
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	394, 676
BsmAI	GTCTC	4 cut(s)	2, 140, 734, 925
BsmBI	CGTCTC	3 cut(s)	2, 140, 734
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	435, 504, 695
BsoBI	CYCGRG	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	5 cut(s)	45, 66, 210, 254, 482
BspANI	GGCC	3 cut(s)	435, 504, 695
BspCNI	CTCAG	5 cut(s)	136, 294, 385, 817, 940
BspFNI	CGCG	3 cut(s)	125, 154, 602
BspLI	GGNNCC	2 cut(s)	31, 40
BspPI	GGATC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
BssNAI	GTATAC	1 cut(s)	233
BssNI	GRCGYC	2 cut(s)	128, 750
Bst1107I	GTATAC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	4 cut(s)	13, 237, 401, 649
BstACI	GRCGYC	2 cut(s)	128, 750
BstBAI	YACGTR	1 cut(s)	829
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	384, 497, 630
BstDEI	CTNAG	6 cut(s)	144, 165, 281, 393, 804, 927
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	4 cut(s)	345, 685, 706, 779
BstFNI	CGCG	3 cut(s)	125, 154, 602
BstHHI	GCGC	4 cut(s)	125, 154, 176, 376
BstKTI	GATC	7 cut(s)	27, 62, 73, 94, 261, 280, 742
BstMAI	GTCTC	4 cut(s)	2, 140, 734, 925
BstMBI	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 501, 608, 661
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	386, 825
BstSCI	CCNGG	2 cut(s)	709, 905
BstUI	CGCG	3 cut(s)	125, 154, 602
BstV1I	GCAGC	2 cut(s)	821, 824
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	435, 504, 695
BtrI	CACGTC	1 cut(s)	522
BtsCI	GGATG	4 cut(s)	345, 685, 706, 779
BtsIMutI	CAGTG	3 cut(s)	117, 645, 756
Cac8I	GCNNGC	3 cut(s)	384, 497, 630
CfoI	GCGC	4 cut(s)	125, 154, 176, 376
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	3 cut(s)	190, 608, 739
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	4 cut(s)	74, 383, 822, 912
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	6 cut(s)	144, 165, 281, 393, 804, 927
DpnI	GATC	7 cut(s)	26, 61, 72, 93, 260, 279, 741
DpnII	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
EaeI	YGGCCR	2 cut(s)	433, 693
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	273
Esp3I	CGTCTC	3 cut(s)	2, 140, 734
FaeI	CATG	4 cut(s)	77, 386, 825, 915
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	73, 382, 821, 911
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	483, 810, 813
FokI	GGATG	4 cut(s)	332, 692, 693, 766
Fsp4HI	GCNGC	3 cut(s)	483, 810, 813
FspAI	RTGCGCAY	1 cut(s)	375
FspBI	CTAG	2 cut(s)	195, 891
FspI	TGCGCA	1 cut(s)	375
GlaI	GCGC	4 cut(s)	124, 153, 175, 375
GluI	GCNGC	3 cut(s)	483, 810, 813
GsaI	CCCAGC	2 cut(s)	45, 366
HaeIII	GGCC	3 cut(s)	435, 504, 695
HapII	CCGG	5 cut(s)	33, 191, 492, 546, 906
HgaI	GACGC	3 cut(s)	190, 608, 739
HhaI	GCGC	4 cut(s)	125, 154, 176, 376
Hin1I	GRCGYC	2 cut(s)	128, 750
Hin1II	CATG	4 cut(s)	77, 386, 825, 915
Hin6I	GCGC	4 cut(s)	123, 152, 174, 374
HinP1I	GCGC	4 cut(s)	123, 152, 174, 374
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	48, 306, 323, 604, 933
HpaII	CCGG	5 cut(s)	33, 191, 492, 546, 906
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	3 cut(s)	233, 313, 514
Hpy188I	TCNGA	6 cut(s)	91, 241, 394, 877, 930, 949
Hpy188III	TCNNGA	8 cut(s)	57, 248, 275, 579, 718, 743, 775, 937
Hpy8I	GTNNAC	3 cut(s)	233, 313, 514
Hpy99I	CGWCG	6 cut(s)	130, 133, 306, 530, 602, 755
HpyAV	CCTTC	2 cut(s)	424, 740
HpyCH4III	ACNGT	4 cut(s)	13, 237, 401, 649
HpyCH4IV	ACGT	6 cut(s)	128, 516, 521, 636, 828, 855
HpyCH4V	TGCA	5 cut(s)	271, 499, 559, 882, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 501, 608, 661
HpyF3I	CTNAG	6 cut(s)	144, 165, 281, 393, 804, 927
HpySE526I	ACGT	6 cut(s)	128, 516, 521, 636, 828, 855
Hsp92I	GRCGYC	2 cut(s)	128, 750
Hsp92II	CATG	4 cut(s)	77, 386, 825, 915
HspAI	GCGC	4 cut(s)	123, 152, 174, 374
Kzo9I	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
LmnI	GCTCC	3 cut(s)	35, 140, 645
Lsp1109I	GCAGC	2 cut(s)	821, 824
LweI	GCATC	3 cut(s)	241, 280, 670
MaeI	CTAG	2 cut(s)	195, 891
MaeII	ACGT	6 cut(s)	128, 516, 521, 636, 828, 855
MaeIII	GTNAC	5 cut(s)	76, 517, 688, 754, 824
MalI	GATC	7 cut(s)	26, 61, 72, 93, 260, 279, 741
MboI	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
MboII	GAAGA	1 cut(s)	478
MfeI	CAATTG	1 cut(s)	697
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	5 cut(s)	85, 424, 592, 697, 970
MlyI	GAGTC	2 cut(s)	598, 927
MmeI	TCCRAC	2 cut(s)	219, 900
MnlI	CCTC	7 cut(s)	208, 304, 359, 388, 398, 813, 843
Mph1103I	ATGCAT	1 cut(s)	273
MseI	TTAA	3 cut(s)	15, 461, 1003
MslI	CAYNNNNRTG	2 cut(s)	266, 381
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	5 cut(s)	33, 191, 492, 546, 906
MspR9I	CCNGG	2 cut(s)	711, 907
MunI	CAATTG	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	3 cut(s)	125, 154, 602
MwoI	GCNNNNNNNGC	4 cut(s)	149, 501, 608, 661
NciI	CCSGG	1 cut(s)	907
NdeII	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
NlaIII	CATG	4 cut(s)	77, 386, 825, 915
NlaIV	GGNNCC	2 cut(s)	31, 40
NmeAIII	GCCGAG	2 cut(s)	238, 411
NmuCI	GTSAC	4 cut(s)	76, 517, 688, 754
NsbI	TGCGCA	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	2 cut(s)	386, 825
NspV	TTCGAA	1 cut(s)	321
PaeI	GCATGC	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	606
PciI	ACATGT	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PfeI	GAWTC	3 cut(s)	48, 306, 323
PflMI	CCANNNNNTGG	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	484, 811, 814
PleI	GAGTC	2 cut(s)	598, 927
PpsI	GAGTC	2 cut(s)	598, 927
Ppu21I	YACGTR	1 cut(s)	829
PscI	ACATGT	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	709
PspFI	CCCAGC	2 cut(s)	41, 362
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	2 cut(s)	31, 40
PspPI	GGNCC	1 cut(s)	38
PspXI	VCTCGAGB	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
RseI	CAYNNNNRTG	2 cut(s)	266, 381
SaqAI	TTAA	3 cut(s)	15, 461, 1003
SatI	GCNGC	3 cut(s)	483, 810, 813
Sau3AI	GATC	7 cut(s)	24, 59, 70, 91, 258, 277, 739
Sau96I	GGNCC	1 cut(s)	38
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	2 cut(s)	598, 927
ScrFI	CCNGG	2 cut(s)	711, 907
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	3 cut(s)	241, 280, 670
Sfr274I	CTCGAG	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	2 cut(s)	266, 381
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	5 cut(s)	85, 424, 592, 697, 970
SsiI	CCGC	5 cut(s)	45, 66, 210, 254, 482
SspMI	CTAG	2 cut(s)	195, 891
StyD4I	CCNGG	2 cut(s)	709, 905
TaaI	ACNGT	4 cut(s)	13, 237, 401, 649
TaiI	ACGT	6 cut(s)	131, 519, 524, 639, 831, 858
TaqI	TCGA	4 cut(s)	304, 321, 607, 742
TasI	AATT	5 cut(s)	85, 424, 592, 697, 970
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	48, 306, 323
Tru1I	TTAA	3 cut(s)	15, 461, 1003
Tru9I	TTAA	3 cut(s)	15, 461, 1003
TscAI	CASTG	3 cut(s)	124, 652, 763
TseFI	GTSAC	4 cut(s)	76, 517, 688, 754
TseI	GCWGC	2 cut(s)	809, 812
Tsp45I	GTSAC	4 cut(s)	76, 517, 688, 754
TspDTI	ATGAA	1 cut(s)	695
TspGWI	ACGGA	2 cut(s)	86, 514
TspRI	CASTG	3 cut(s)	124, 652, 763
Van91I	CCANNNNNTGG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	392
XceI	RCATGY	2 cut(s)	386, 825
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	232
XspI	CTAG	2 cut(s)	195, 891
ZraI	GACGTC	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	869
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.