RchiOBHm_Chr7g0186391

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
6331568 .. 6333970
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16636

Sequence Viewer

Length: 1008 bp
ATGCTCGAAACCGTGAAGTACCTGATCGGCTCCGTCGGCACCAGCGGTTACGGCTCCAAGAGCACCGCGGAGCAAGTCACCGACAGCTGCCCCGATCTCCGCTCCATCACCGCCATCATCACAGGTGCTACGTCGGGGATCGGAGCAGAGACTGCGCGAGTGTTAGCGAAGCGCGGCGCCAAGCTAGTCCTCCCCGCTCGGAGCCTTAAAGCCGCCGAGGACGCCAAGGCGCGAATCCTCTCCGAGTTTCCGGACTCGGAGATCATTGTCATGGCGCTTGATCTCAGCTCCCTTGCTTCCGTTAGAAACTTCGTGTCGGAGTTCGAGTCCCTCCACCTACCTCTTAATCTCCTCATAAACAACGCCGGTAAGTTCGCGCACGAGCATGCGATTTCCGAAGACGGAATAGAAATGACTTTTGCTACTAATTATCTGGGTCATTTTCTGTTGACGAAGCTGCTGCTGAACAAGATGATCCAAACAGCGAAGGCCACCGGCGTCCAAGGGCGAATAGTGAACGTGTCGTCTGCTATTCACGGCTGGTTTTCCGGAGATACAATCCGATACCTCGGCGAGATAAGCCGGAGCAGAAGCCAATACGACGAGACACGTGCGTATGCGCTCTCGAAGCTCGCCAACGTTTTGCACACGAAGGAACTCGGTCGCAGGCTCAGGGAAATGGAGGCCAACGTGACTGTGAACTGTGTGCATCCGGGGATTGTTAGGACCCGACTCACCAGAGAACGTGAAGGCTTTGCTACTGATATGGTGTTCCTCTTTGCTTCCAAGCTCTTGAAAACAATACCTCAGGCTGCAGCCACGACATGTTACGTTGCGACTCATCCACGGCTGATCGGTGTGTCCGGGAAGTATTTTGCGGATTGCAACGAGACATCGCCGTCAAAATTGGGGTCTAATTTGGTGGAAGCTAGTCGGTTATGGTCCGCTTCTGAAGTCATGGTGTCCAAAGATTCCGGTGCTATTTTTGCAGATCAATTGAAGGACTAG

Protein Analysis

335

Amino Acids

36.35

Weight (kDa)

8.79

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 37 - 177 3.5e-27 short chain dehydrogenase
KR PF08659 37 - 129 7.2e-10 KR domain
adh_short_C2 PF13561 42 - 254 5.2e-19 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 898
AccB1I GGYRCC 2 cut(s) 38, 176
AccBSI CCGCTC 2 cut(s) 102, 197
AccII CGCG 5 cut(s) 68, 157, 174, 232, 377
AccIII TCCGGA 2 cut(s) 250, 548
AclI AACGTT 1 cut(s) 639
AclWI GGATC 2 cut(s) 146, 469
AcuI CTGAAG 1 cut(s) 972
AcvI CACGTG 1 cut(s) 611
AcyI GRCGYC 3 cut(s) 177, 222, 498
AfaI GTAC 1 cut(s) 20
AflIII ACRYGT 3 cut(s) 519, 608, 824
AgsI TTSAA 2 cut(s) 796, 1000
AluBI AGCT 7 cut(s) 87, 184, 288, 457, 631, 790, 929
AluI AGCT 7 cut(s) 87, 184, 288, 457, 631, 790, 929
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 143, 599, 884
AlwI GGATC 2 cut(s) 146, 469
AlwNI CAGNNNCTG 1 cut(s) 152
Aor13HI TCCGGA 2 cut(s) 250, 548
AoxI GGCC 2 cut(s) 489, 684
ApeKI GCWGC 5 cut(s) 87, 457, 460, 812, 815
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspLEI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 622
AspS9I GGNCC 2 cut(s) 726, 942
AsuC2I CCSGG 2 cut(s) 714, 865
AsuHPI GGTGA 3 cut(s) 70, 100, 727
AvaII GGWCC 2 cut(s) 726, 942
AxyI CCTNAGG 1 cut(s) 807
BanI GGYRCC 2 cut(s) 38, 176
BauI CACGAG 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 5 cut(s) 74, 444, 447, 799, 827
BccI CCATC 2 cut(s) 113, 122
BceAI ACGGC 4 cut(s) 67, 553, 863, 883
BcgI CGANNNNNNTGC 4 cut(s) 442, 476, 593, 627
BcnI CCSGG 2 cut(s) 714, 865
BcoDI GTCTC 3 cut(s) 143, 599, 884
BfaI CTAG 3 cut(s) 185, 930, 1006
BfmI CTRYAG 1 cut(s) 813
BfoI RGCGCY 2 cut(s) 180, 278
BisI GCNGC 7 cut(s) 88, 175, 213, 458, 461, 813, 816
BlsI GCNGC 7 cut(s) 89, 176, 214, 459, 462, 814, 817
Bme1390I CCNGG 2 cut(s) 714, 865
Bme18I GGWCC 2 cut(s) 726, 942
BmgT120I GGNCC 2 cut(s) 726, 942
BmiI GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 728
BmrFI CCNGG 2 cut(s) 714, 865
BmsI GCATC 1 cut(s) 718
BpiI GAAGAC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 714, 865
BsaAI YACGTR 1 cut(s) 611
BsaHI GRCGYC 3 cut(s) 177, 222, 498
BsaJI CCNNGG 7 cut(s) 66, 216, 225, 502, 568, 713, 845
BsaWI WCCGGW 3 cut(s) 250, 548, 974
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse118I RCCGGY 2 cut(s) 365, 494
Bse21I CCTNAGG 1 cut(s) 807
BseAI TCCGGA 2 cut(s) 250, 548
BseDI CCNNGG 7 cut(s) 66, 216, 225, 502, 568, 713, 845
BseGI GGATG 2 cut(s) 709, 841
BseMII CTCAG 3 cut(s) 298, 685, 821
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 5 cut(s) 74, 444, 447, 799, 827
Bsh1236I CGCG 5 cut(s) 68, 157, 174, 232, 377
Bsh1285I CGRYCG 1 cut(s) 664
BshFI GGCC 2 cut(s) 491, 686
BshNI GGYRCC 2 cut(s) 38, 176
BsiEI CGRYCG 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 8 cut(s) 251, 366, 495, 549, 583, 713, 864, 975
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 3 cut(s) 143, 599, 884
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 2 cut(s) 491, 686
Bsp1286I GDGCHC 1 cut(s) 65
Bsp13I TCCGGA 2 cut(s) 250, 548
Bsp143I GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
BspANI GGCC 2 cut(s) 491, 686
BspCNI CTCAG 3 cut(s) 297, 684, 820
BspEI TCCGGA 2 cut(s) 250, 548
BspFNI CGCG 5 cut(s) 68, 157, 174, 232, 377
BspLI GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 728
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 2 cut(s) 146, 469
BspT107I GGYRCC 2 cut(s) 38, 176
BsrBI CCGCTC 2 cut(s) 102, 197
BsrFI RCCGGY 2 cut(s) 365, 494
BssAI RCCGGY 2 cut(s) 365, 494
BssECI CCNNGG 7 cut(s) 66, 216, 225, 502, 568, 713, 845
BssMI GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
BssNI GRCGYC 3 cut(s) 177, 222, 498
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 225, 502
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 13, 697, 704
BstACI GRCGYC 3 cut(s) 177, 222, 498
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 3 cut(s) 387, 633, 668
BstDEI CTNAG 3 cut(s) 284, 671, 807
BstDSI CCRYGG 2 cut(s) 66, 845
BstF5I GGATG 2 cut(s) 709, 841
BstFNI CGCG 5 cut(s) 68, 157, 174, 232, 377
BstH2I RGCGCY 2 cut(s) 180, 278
BstHHI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 622
BstKTI GATC 8 cut(s) 27, 97, 141, 264, 283, 477, 855, 994
BstMAI GTCTC 3 cut(s) 143, 599, 884
BstMBI GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
BstMCI CGRYCG 1 cut(s) 664
BstMWI GCNNNNNNNGC 8 cut(s) 36, 51, 60, 152, 221, 579, 628, 986
BstNSI RCATGY 2 cut(s) 389, 828
BstSCI CCNGG 2 cut(s) 712, 863
BstSFI CTRYAG 1 cut(s) 813
BstUI CGCG 5 cut(s) 68, 157, 174, 232, 377
BstV1I GCAGC 5 cut(s) 74, 444, 447, 799, 827
BstV2I GAAGAC 1 cut(s) 405
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 2 cut(s) 491, 686
BtgI CCRYGG 2 cut(s) 66, 845
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 2 cut(s) 709, 841
Cac8I GCNNGC 3 cut(s) 387, 633, 668
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 622
Cfr10I RCCGGY 2 cut(s) 365, 494
Cfr13I GGNCC 2 cut(s) 726, 942
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 2 cut(s) 230, 487
Csp6I GTAC 1 cut(s) 19
CviAII CATG 4 cut(s) 271, 386, 825, 958
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 284, 671, 807
DinI GGCGCC 1 cut(s) 178
DpnI GATC 8 cut(s) 26, 96, 140, 263, 282, 476, 854, 993
DpnII GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
DrdI GACNNNNNNGTC 1 cut(s) 898
DseDI GACNNNNNNGTC 1 cut(s) 898
Eco130I CCWWGG 2 cut(s) 225, 502
Eco47I GGWCC 2 cut(s) 726, 942
Eco57I CTGAAG 1 cut(s) 972
Eco72I CACGTG 1 cut(s) 611
Eco81I CCTNAGG 1 cut(s) 807
EcoO109I RGGNCCY 1 cut(s) 726
EcoT14I CCWWGG 2 cut(s) 225, 502
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 225, 502
FaeI CATG 4 cut(s) 274, 389, 828, 961
FaiI YATR 8 cut(s) 272, 356, 387, 618, 767, 826, 940, 959
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 270, 385, 824, 957
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 7 cut(s) 88, 175, 213, 458, 461, 813, 816
FokI GGATG 2 cut(s) 696, 828
Fsp4HI GCNGC 7 cut(s) 88, 175, 213, 458, 461, 813, 816
FspBI CTAG 3 cut(s) 185, 930, 1006
GlaI GCGC 7 cut(s) 156, 173, 178, 231, 276, 378, 621
GluI GCNGC 7 cut(s) 88, 175, 213, 458, 461, 813, 816
HaeII RGCGCY 2 cut(s) 180, 278
HaeIII GGCC 2 cut(s) 491, 686
HapII CCGG 8 cut(s) 251, 366, 495, 549, 583, 713, 864, 975
HgaI GACGC 2 cut(s) 230, 487
HhaI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 622
Hin1I GRCGYC 3 cut(s) 177, 222, 498
Hin1II CATG 4 cut(s) 274, 389, 828, 961
Hin6I GCGC 7 cut(s) 155, 172, 177, 230, 275, 377, 620
HinP1I GCGC 7 cut(s) 155, 172, 177, 230, 275, 377, 620
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 6 cut(s) 234, 254, 326, 732, 838, 971
HpaII CCGG 8 cut(s) 251, 366, 495, 549, 583, 713, 864, 975
HphI GGTGA 3 cut(s) 70, 100, 727
Hpy166II GTNNAC 3 cut(s) 450, 517, 700
Hpy188I TCNGA 8 cut(s) 143, 201, 244, 259, 319, 397, 563, 952
Hpy188III TCNNGA 4 cut(s) 251, 549, 625, 793
Hpy8I GTNNAC 3 cut(s) 450, 517, 700
Hpy99I CGWCG 3 cut(s) 38, 136, 605
HpyAV CCTTC 4 cut(s) 481, 646, 743, 994
HpyCH4III ACNGT 3 cut(s) 13, 697, 704
HpyCH4IV ACGT 7 cut(s) 131, 519, 610, 639, 690, 745, 831
HpyCH4V TGCA 5 cut(s) 646, 709, 815, 885, 989
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 51, 60, 152, 221, 579, 628, 986
HpyF3I CTNAG 3 cut(s) 284, 671, 807
HpySE526I ACGT 7 cut(s) 131, 519, 610, 639, 690, 745, 831
Hsp92I GRCGYC 3 cut(s) 177, 222, 498
Hsp92II CATG 4 cut(s) 274, 389, 828, 961
HspAI GCGC 7 cut(s) 155, 172, 177, 230, 275, 377, 620
KasI GGCGCC 1 cut(s) 176
Kpn2I TCCGGA 2 cut(s) 250, 548
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
LmnI GCTCC 8 cut(s) 35, 59, 70, 107, 143, 201, 293, 585
Lsp1109I GCAGC 5 cut(s) 74, 444, 447, 799, 827
LweI GCATC 1 cut(s) 718
MaeI CTAG 3 cut(s) 185, 930, 1006
MaeII ACGT 7 cut(s) 131, 519, 610, 639, 690, 745, 831
MaeIII GTNAC 4 cut(s) 47, 76, 691, 827
MalI GATC 8 cut(s) 26, 96, 140, 263, 282, 476, 854, 993
MbiI CCGCTC 2 cut(s) 102, 197
MboI GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
MboII GAAGA 1 cut(s) 410
MfeI CAATTG 1 cut(s) 995
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 4 cut(s) 427, 905, 916, 995
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 4 cut(s) 248, 335, 726, 832
MmeI TCCRAC 1 cut(s) 297
MroI TCCGGA 2 cut(s) 250, 548
MseI TTAA 2 cut(s) 207, 345
MslI CAYNNNNRTG 2 cut(s) 269, 384
MspA1I CMGCKG 3 cut(s) 45, 68, 87
MspI CCGG 8 cut(s) 251, 366, 495, 549, 583, 713, 864, 975
MspR9I CCNGG 2 cut(s) 714, 865
MteI GCGCNGCGC 1 cut(s) 175
MunI CAATTG 1 cut(s) 995
MvnI CGCG 5 cut(s) 68, 157, 174, 232, 377
MwoI GCNNNNNNNGC 8 cut(s) 36, 51, 60, 152, 221, 579, 628, 986
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 2 cut(s) 714, 865
NdeII GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
NlaIII CATG 4 cut(s) 274, 389, 828, 961
NlaIV GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 728
NmeAIII GCCGAG 2 cut(s) 241, 549
NmuCI GTSAC 2 cut(s) 76, 691
NspI RCATGY 2 cut(s) 389, 828
PaeI GCATGC 1 cut(s) 389
PciI ACATGT 1 cut(s) 824
PfeI GAWTC 2 cut(s) 234, 971
PfoI TCCNGGA 1 cut(s) 863
PkrI GCNGC 7 cut(s) 89, 176, 214, 459, 462, 814, 817
PleI GAGTC 4 cut(s) 248, 334, 726, 832
PluTI GGCGCC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 4 cut(s) 248, 334, 726, 832
Ppu21I YACGTR 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 726
PscI ACATGT 1 cut(s) 824
Psp1406I AACGTT 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 726
PspCI CACGTG 1 cut(s) 611
PspN4I GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 728
PspPI GGNCC 2 cut(s) 726, 942
PspPPI RGGWCCY 1 cut(s) 726
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 269, 384
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 207, 345
SatI GCNGC 7 cut(s) 88, 175, 213, 458, 461, 813, 816
Sau3AI GATC 8 cut(s) 24, 94, 138, 261, 280, 474, 852, 991
Sau96I GGNCC 2 cut(s) 726, 942
SchI GAGTC 4 cut(s) 248, 335, 726, 832
ScrFI CCNGG 2 cut(s) 714, 865
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 813
SfoI GGCGCC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 494
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 2 cut(s) 726, 942
SmiMI CAYNNNNRTG 2 cut(s) 269, 384
SphI GCATGC 1 cut(s) 389
Sse9I AATT 4 cut(s) 427, 905, 916, 995
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 3 cut(s) 185, 930, 1006
StyD4I CCNGG 2 cut(s) 712, 863
StyI CCWWGG 2 cut(s) 225, 502
TaaI ACNGT 3 cut(s) 13, 697, 704
TaiI ACGT 7 cut(s) 134, 522, 613, 642, 693, 748, 834
TaqI TCGA 3 cut(s) 6, 324, 626
TaqII GACCGA 1 cut(s) 650
TasI AATT 4 cut(s) 427, 905, 916, 995
TauI GCSGC 2 cut(s) 177, 215
TfiI GAWTC 2 cut(s) 234, 971
Tru1I TTAA 2 cut(s) 207, 345
Tru9I TTAA 2 cut(s) 207, 345
TseFI GTSAC 2 cut(s) 76, 691
TseI GCWGC 5 cut(s) 87, 457, 460, 812, 815
Tsp45I GTSAC 2 cut(s) 76, 691
TspGWI ACGGA 3 cut(s) 22, 289, 417
VpaK11BI GGWCC 2 cut(s) 726, 942
XceI RCATGY 2 cut(s) 389, 828
XspI CTAG 3 cut(s) 185, 930, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.