Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009222

Physical Location & Seq

Genomic Coordinates Reverse (-)

59650036 .. 59651155

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0473900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATATTAACCAACTAAAATCAGAGCAGCAGATGGAAATGATGATGATGATGCAAATGGATAAAATCTCCGAGCTCTGCGGCGCCTACAACGACGTCGTTTCCGACCTCCCTTCCTCTGAACAATTTCCTGGTAGTGCAACTTCCATGCCACAATACTGTCATGACCAAAACCCTCACAATGTTTCTTTACCTCCGCCCTCATTTCTTAACCTAAGCCCATCAACCATATCATTCACCAACTCACTTGAACAATCACCACAACCTCAACTGGCTTCCGACAAGCGTGCTTCAATGGCGGCGATGAGGGAGATGATATTCAGAATCGCCTCGATGCAGCCGATCCACATAGACCCGGAGTCGGTGAAGCCGCCGAAGAGAAGGAACGTGAAGATTTCCAAGGACCCTCAGAGCGTGGCGGCGCGTCACAGGAGGGAGAGGATTAGCGAGAGGATTAGAATACTCCAGAGACTAGTCCCCGGCGGGACTAAAATGGACACTGCGTCCATGCTGGACGAGGCTATTCACTACGTCAAGTTTTTGAAGTCTCAAGTTCAGACGCTGGAGAGAGCCGCCGTGAATAATAATAATAATAATAATAATACTAATAATAATAATAATAGGGTACCGCAAACCGGGATTGGTTTTCCTGTGGCCATGTCAAGTGGGAGTAATTACCTTTCTAATTCTATGGCCAAAGCGTACCAAGCTCATCCTCCGCAGCATCATCAGAATGTGCAGCATTTTGGAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

252

Amino Acids

28.32

Weight (kDa)

8.54

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	141 - 182	3.5e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	143 - 196	9.9e-13	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64590 AT4G24050 AT4G24050
fragaria_vesca	FvH4_5g11450 FvH4_5g11450 FvH4_5g11450
malus_domestica	MD06G1113700.v1.1 MD14G1134700.v1.1
prunus_persica	Prupe.5G126400_v2.0.a1 Prupe.5G126400_v2.0.a1
pyrus_communis	pycom06g10620
rosa_chinensis	RchiOBHm_Chr7g0186391
rosa_laevigata	RLG00000004847
rosa_multiflora	Rmu_sc0000645.1_g000045
rosa_roxburghii	Rroxscaffold_3G00268170
rosa_rugosa	Rorug06G0473800 Rorug06G0473900
rosa_samantha	Rh7AG067500 Rh7CG080500 Rh7DG081100
rosa_wichuraiana	Rw7G006760 Rw7G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	2 cut(s)	83, 625
AccII	CGCG	1 cut(s)	424
AciI	CCGC	9 cut(s)	81, 197, 299, 371, 419, 483, 573, 629, 719
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	2 cut(s)	654, 693
AcyI	GRCGYC	2 cut(s)	84, 96
AfaI	GTAC	2 cut(s)	627, 704
AfiI	CCNNNNNNNGG	2 cut(s)	361, 635
AgsI	TTSAA	3 cut(s)	251, 294, 544
AhdI	GACNNNNNGTC	2 cut(s)	358, 502
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	76, 710
AluI	AGCT	2 cut(s)	76, 710
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	463, 552
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	654, 693
ApeKI	GCWGC	4 cut(s)	28, 337, 721, 739
Asp700I	GAANNNNTTC	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	86, 424
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	3 cut(s)	356, 480, 637
AsuHPI	GGTGA	3 cut(s)	229, 249, 376
AvaII	GGWCC	1 cut(s)	403
BalI	TGGCCA	2 cut(s)	656, 695
BanI	GGYRCC	2 cut(s)	83, 625
BanII	GRGCYC	1 cut(s)	78
BarI	GAAGNNNNNNTAC	2 cut(s)	127, 159
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	40, 349, 733, 751
BccI	CCATC	2 cut(s)	28, 229
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	3 cut(s)	356, 480, 637
BcoDI	GTCTC	2 cut(s)	463, 552
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	9 cut(s)	29, 82, 300, 338, 371, 420, 573, 722, 740
BlsI	GCNGC	9 cut(s)	30, 83, 301, 339, 372, 421, 574, 723, 741
Bme1390I	CCNGG	4 cut(s)	132, 356, 480, 637
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	2 cut(s)	358, 502
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	85, 405, 627
BmrFI	CCNGG	4 cut(s)	132, 356, 480, 637
BmsI	GCATC	3 cut(s)	42, 324, 733
BpmI	CTGGAG	2 cut(s)	449, 584
Bpu10I	CCTNAGC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	534
BpuMI	CCSGG	3 cut(s)	356, 480, 637
BsaHI	GRCGYC	2 cut(s)	84, 96
BsaJI	CCNNGG	2 cut(s)	399, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 635
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	399, 478
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	361, 635
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	4 cut(s)	40, 349, 733, 751
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	656, 695
BshNI	GGYRCC	2 cut(s)	83, 625
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	356, 480, 636
BslFI	GGGAC	2 cut(s)	461, 499
BslI	CCNNNNNNNGG	2 cut(s)	361, 635
BsmAI	GTCTC	2 cut(s)	463, 552
BsmFI	GGGAC	2 cut(s)	461, 499
BsnI	GGCC	2 cut(s)	656, 695
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	9 cut(s)	81, 197, 299, 371, 419, 483, 573, 629, 719
BspANI	GGCC	2 cut(s)	656, 695
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	85, 405, 627
BspPI	GGATC	1 cut(s)	337
BspT107I	GGYRCC	2 cut(s)	83, 625
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	399, 478
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	2 cut(s)	84, 96
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	84, 96
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	215, 408
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 424
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	2 cut(s)	463, 552
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 707
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	4 cut(s)	130, 354, 478, 635
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	40, 349, 733, 751
BsuRI	GGCC	2 cut(s)	656, 695
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	562
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	2 cut(s)	86, 424
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	3 cut(s)	413, 492, 568
Csp6I	GTAC	2 cut(s)	626, 703
CviAII	CATG	4 cut(s)	148, 164, 508, 658
CviQI	GTAC	2 cut(s)	626, 703
DdeI	CTNAG	2 cut(s)	215, 408
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DriI	GACNNNNNGTC	2 cut(s)	358, 502
EaeI	YGGCCR	2 cut(s)	654, 693
Eam1104I	CTCTTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	2 cut(s)	358, 502
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	4 cut(s)	151, 167, 511, 661
FaiI	YATR	7 cut(s)	149, 165, 230, 350, 509, 659, 692
FaqI	GGGAC	2 cut(s)	461, 499
FatI	CATG	4 cut(s)	147, 163, 507, 657
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	9 cut(s)	29, 82, 300, 338, 371, 420, 573, 722, 740
FokI	GGATG	1 cut(s)	699
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	9 cut(s)	29, 82, 300, 338, 371, 420, 573, 722, 740
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	2 cut(s)	85, 423
GluI	GCNGC	9 cut(s)	29, 82, 300, 338, 371, 420, 573, 722, 740
GsuI	CTGGAG	2 cut(s)	449, 584
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	656, 695
HapII	CCGG	3 cut(s)	356, 480, 636
HgaI	GACGC	3 cut(s)	413, 492, 568
HhaI	GCGC	2 cut(s)	86, 424
Hin1I	GRCGYC	2 cut(s)	84, 96
Hin1II	CATG	4 cut(s)	151, 167, 511, 661
Hin6I	GCGC	2 cut(s)	84, 422
HinP1I	GCGC	2 cut(s)	84, 422
HinfI	GANTC	2 cut(s)	324, 359
HpaII	CCGG	3 cut(s)	356, 480, 636
HphI	GGTGA	3 cut(s)	229, 249, 376
Hpy188I	TCNGA	9 cut(s)	25, 73, 106, 121, 280, 323, 411, 558, 732
Hpy188III	TCNNGA	2 cut(s)	164, 466
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	123, 375
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	3 cut(s)	96, 387, 531
HpyCH4V	TGCA	4 cut(s)	55, 140, 337, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 707
HpyF3I	CTNAG	2 cut(s)	215, 408
HpySE526I	ACGT	3 cut(s)	96, 387, 531
Hsp92I	GRCGYC	2 cut(s)	84, 96
Hsp92II	CATG	4 cut(s)	151, 167, 511, 661
HspAI	GCGC	2 cut(s)	84, 422
KasI	GGCGCC	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	629
Kzo9I	GATC	1 cut(s)	342
Lsp1109I	GCAGC	4 cut(s)	40, 349, 733, 751
LweI	GCATC	3 cut(s)	42, 324, 733
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	96, 387, 531
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	2 cut(s)	388, 403
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	2 cut(s)	656, 695
MluCI	AATT	3 cut(s)	125, 673, 685
MluNI	TGGCCA	2 cut(s)	656, 695
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	129, 303
Mox20I	TGGCCA	2 cut(s)	656, 695
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	2 cut(s)	656, 695
MseI	TTAA	2 cut(s)	9, 210
MslI	CAYNNNNRTG	1 cut(s)	732
Msp20I	TGGCCA	2 cut(s)	656, 695
MspI	CCGG	3 cut(s)	356, 480, 636
MspR9I	CCNGG	4 cut(s)	132, 356, 480, 637
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	296, 707
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	3 cut(s)	356, 480, 637
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	4 cut(s)	151, 167, 511, 661
NlaIV	GGNNCC	3 cut(s)	85, 405, 627
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 338
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	9 cut(s)	30, 83, 301, 339, 372, 421, 574, 723, 741
PleI	GAGTC	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	85, 405, 627
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	562
RsaI	GTAC	2 cut(s)	627, 704
RsaNI	GTAC	2 cut(s)	626, 703
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	9, 210
SatI	GCNGC	9 cut(s)	29, 82, 300, 338, 371, 420, 573, 722, 740
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	132, 356, 480, 637
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	3 cut(s)	42, 324, 733
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	3 cut(s)	125, 673, 685
SsiI	CCGC	9 cut(s)	81, 197, 299, 371, 419, 483, 573, 629, 719
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	473
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	4 cut(s)	130, 354, 478, 635
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	3 cut(s)	99, 390, 534
TaqI	TCGA	1 cut(s)	332
TasI	AATT	3 cut(s)	125, 673, 685
TauI	GCSGC	5 cut(s)	84, 302, 373, 422, 575
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	9, 210
Tru9I	TTAA	2 cut(s)	9, 210
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	4 cut(s)	28, 337, 721, 739
Tsp45I	GTSAC	1 cut(s)	425
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	473
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.