Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009222

Physical Location & Seq

Genomic Coordinates Reverse (-)

6490717 .. 6493467

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11450.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCTCGAAACCGTGAAGTACCTGATCGGCTCGGTCGGTGCTAGCGGTTACGGCTCCAAGAGCACCGCCGAACAAGTCACCGAAAGCTGCCCCGATCTCAGCTCCATCACCGCCATCATCACAGGTGCTACGTCGGGGATTGGAGCGGAGACGGCGCGAGTGTTAGCCAAGCGCGGGGCAAGGCTGGTCCTCCCTGCTCGGAGCCTCAAAGCCGCCGAGGACGCTAAGGCAAGAATCGTCGCTGAGTTTCCGGGCTCCGAGATCGTCGTCATGGCGCTTGATCTCAGCTCTCTTACTTCAGTCAGAAACTTCGTCTCTGAGTTCGAATCCCTCAACGTATCTCTTAATCTCCTCATAAACAACGCCGGAAAGTTCGCGCACGAGCATGCGATTTCTGAAGACGGCATCGAACTGACCTTTGCTACTAATTATCTTGGTCATTTTCTGTTAACGAAGCTGCTGCTGAACAAAATAATCCAGACGGCGGAGGCCACCGGCGTCCAAGGTCGAATAGTGAACGTGTCGTCTGCCATTCACGGCTGGTTTTCCGGCGATACAATCCGATACCTCGGCGAGATAAGCCGGAACAGAAGCAGCCAATACGACGAGACACGTGCGTATGCCCTCTCGAAGCTCGCCAACGTTTTGCACACCAAGGAACTCGCTCGCAGGCTCAGGGAAATGGAGGCCAACGTGACTGTGAACTGTGTCCATCCGGGGATTGTTAGGACCCGACTCACCAGAGAACGTGAAGGCCTTGCTACAGATTTGGTGTTCCTCTTAGCTTCCAAGCTCTTGAAAACAATACCTCAGGCTGCAGCCACGACATGTTACGTTGCGACTCATCCGAAGATGATCGGTGTGTCCGGGAAGTATTTTGCGGATTGTAACGAGACATCGCCGTCGAAATTGGGGTCTAATTTGGTGGAAGCTGGTCGGTTATGGTCTGCCTCTGAAGTCATGGTGTCCAAAGATTCCGGTGCTATTTTTGCAGATCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

335

Amino Acids

35.94

Weight (kDa)

8.27

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 177	2.2e-25	short chain dehydrogenase
KR	PF08659	37 - 128	7e-10	KR domain
adh_short_C2	PF13561	42 - 252	3.6e-19	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64590 AT4G24050 AT4G24050
fragaria_vesca	FvH4_5g11450 FvH4_5g11450 FvH4_5g11450
malus_domestica	MD06G1113700.v1.1 MD14G1134700.v1.1
prunus_persica	Prupe.5G126400_v2.0.a1 Prupe.5G126400_v2.0.a1
pyrus_communis	pycom06g10620
rosa_chinensis	RchiOBHm_Chr7g0186391
rosa_laevigata	RLG00000004847
rosa_multiflora	Rmu_sc0000645.1_g000045
rosa_roxburghii	Rroxscaffold_3G00268170
rosa_rugosa	Rorug06G0473800 Rorug06G0473900
rosa_samantha	Rh7AG067500 Rh7CG080500 Rh7DG081100
rosa_wichuraiana	Rw7G006760 Rw7G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	901
AccBSI	CCGCTC	1 cut(s)	146
AccII	CGCG	3 cut(s)	157, 174, 377
AciI	CCGC	8 cut(s)	45, 66, 111, 146, 174, 213, 485, 881
AclI	AACGTT	1 cut(s)	642
AcuI	CTGAAG	3 cut(s)	282, 417, 975
AcvI	CACGTG	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	174, 484
AflIII	ACRYGT	3 cut(s)	519, 611, 827
AgsI	TTSAA	1 cut(s)	799
AluBI	AGCT	8 cut(s)	87, 102, 288, 457, 634, 785, 793, 932
AluI	AGCT	8 cut(s)	87, 102, 288, 457, 634, 785, 793, 932
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	4 cut(s)	143, 319, 602, 887
AoxI	GGCC	3 cut(s)	489, 687, 754
ApeKI	GCWGC	6 cut(s)	87, 457, 460, 594, 815, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	899, 931
AspLEI	GCGC	4 cut(s)	157, 174, 277, 379
AspS9I	GGNCC	2 cut(s)	187, 729
AsuC2I	CCSGG	3 cut(s)	252, 717, 868
AsuHPI	GGTGA	3 cut(s)	70, 100, 730
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	187, 729
AxyI	CCTNAGG	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	257
BauI	CACGAG	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	6 cut(s)	74, 444, 447, 606, 802, 830
BccI	CCATC	3 cut(s)	113, 122, 720
BceAI	ACGGC	6 cut(s)	67, 168, 418, 498, 553, 886
BcgI	CGANNNNNNTGC	4 cut(s)	442, 476, 596, 630
BcnI	CCSGG	3 cut(s)	252, 717, 868
BcoDI	GTCTC	4 cut(s)	143, 319, 602, 887
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	762, 816
BfoI	RGCGCY	1 cut(s)	278
BisI	GCNGC	7 cut(s)	88, 213, 458, 461, 595, 816, 819
BlsI	GCNGC	7 cut(s)	89, 214, 459, 462, 596, 817, 820
Bme1390I	CCNGG	3 cut(s)	252, 717, 868
Bme18I	GGWCC	2 cut(s)	187, 729
BmgT120I	GGNCC	2 cut(s)	187, 729
BmiI	GGNNCC	4 cut(s)	55, 203, 256, 731
BmrFI	CCNGG	3 cut(s)	252, 717, 868
BmsI	GCATC	1 cut(s)	414
BmtI	GCTAGC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	225, 674
Bpu14I	TTCGAA	1 cut(s)	324
BpuMI	CCSGG	3 cut(s)	252, 717, 868
BsaAI	YACGTR	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	5 cut(s)	216, 502, 568, 654, 716
BsaWI	WCCGGW	1 cut(s)	977
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 484
Bse118I	RCCGGY	1 cut(s)	494
Bse21I	CCTNAGG	1 cut(s)	810
BseDI	CCNNGG	5 cut(s)	216, 502, 568, 654, 716
BseGI	GGATG	2 cut(s)	712, 844
BseLI	CCNNNNNNNGG	2 cut(s)	174, 484
BseMII	CTCAG	6 cut(s)	112, 234, 298, 309, 688, 824
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	6 cut(s)	74, 444, 447, 606, 802, 830
Bsh1236I	CGCG	3 cut(s)	157, 174, 377
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	491, 689, 756
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
BslI	CCNNNNNNNGG	2 cut(s)	174, 484
BsmAI	GTCTC	4 cut(s)	143, 319, 602, 887
BsmBI	CGTCTC	2 cut(s)	143, 319
BsnI	GGCC	3 cut(s)	491, 689, 756
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	65, 257
Bsp143I	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
BspACI	CCGC	8 cut(s)	45, 66, 111, 146, 174, 213, 485, 881
BspANI	GGCC	3 cut(s)	491, 689, 756
BspCNI	CTCAG	6 cut(s)	111, 235, 297, 310, 687, 823
BspFNI	CGCG	3 cut(s)	157, 174, 377
BspLI	GGNNCC	4 cut(s)	55, 203, 256, 731
BspMAI	CTGCAG	1 cut(s)	820
BspOI	GCTAGC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	5 cut(s)	216, 502, 568, 654, 716
BssMI	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
BssNI	GRCGYC	1 cut(s)	498
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	502, 654
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	13, 700, 707
BstACI	GRCGYC	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	5 cut(s)	43, 387, 636, 667, 671
BstDEI	CTNAG	8 cut(s)	98, 225, 243, 284, 318, 674, 781, 810
BstF5I	GGATG	2 cut(s)	712, 844
BstFNI	CGCG	3 cut(s)	157, 174, 377
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	4 cut(s)	157, 174, 277, 379
BstKTI	GATC	6 cut(s)	27, 97, 264, 283, 858, 997
BstMAI	GTCTC	4 cut(s)	143, 319, 602, 887
BstMBI	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 60, 152, 221, 579, 989
BstNSI	RCATGY	2 cut(s)	389, 831
BstSCI	CCNGG	3 cut(s)	250, 715, 866
BstSFI	CTRYAG	2 cut(s)	762, 816
BstUI	CGCG	3 cut(s)	157, 174, 377
BstV1I	GCAGC	6 cut(s)	74, 444, 447, 606, 802, 830
BstV2I	GAAGAC	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	491, 689, 756
BtgZI	GCGATG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	712, 844
Cac8I	GCNNGC	5 cut(s)	43, 387, 636, 667, 671
CfoI	GCGC	4 cut(s)	157, 174, 277, 379
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	187, 729
CseI	GACGC	2 cut(s)	230, 487
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	271, 386, 828, 961
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	8 cut(s)	98, 225, 243, 284, 318, 674, 781, 810
DpnI	GATC	6 cut(s)	26, 96, 263, 282, 857, 996
DpnII	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
DrdI	GACNNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	901
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	2 cut(s)	502, 654
Eco147I	AGGCCT	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	187, 729
Eco57I	CTGAAG	3 cut(s)	282, 417, 975
Eco72I	CACGTG	1 cut(s)	614
Eco81I	CCTNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	502, 654
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	2 cut(s)	502, 654
Esp3I	CGTCTC	2 cut(s)	143, 319
FaeI	CATG	4 cut(s)	274, 389, 831, 964
FaiI	YATR	7 cut(s)	272, 356, 387, 621, 829, 943, 962
FatI	CATG	4 cut(s)	270, 385, 827, 960
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	7 cut(s)	88, 213, 458, 461, 595, 816, 819
FokI	GGATG	2 cut(s)	699, 831
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	7 cut(s)	88, 213, 458, 461, 595, 816, 819
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	4 cut(s)	156, 173, 276, 378
GluI	GCNGC	7 cut(s)	88, 213, 458, 461, 595, 816, 819
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	491, 689, 756
HapII	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
HgaI	GACGC	2 cut(s)	230, 487
HhaI	GCGC	4 cut(s)	157, 174, 277, 379
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	274, 389, 831, 964
Hin6I	GCGC	4 cut(s)	155, 172, 275, 377
HinP1I	GCGC	4 cut(s)	155, 172, 275, 377
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	5 cut(s)	234, 326, 735, 841, 974
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
HphI	GGTGA	3 cut(s)	70, 100, 730
Hpy166II	GTNNAC	3 cut(s)	450, 517, 703
Hpy188I	TCNGA	8 cut(s)	201, 259, 305, 319, 397, 563, 849, 955
Hpy188III	TCNNGA	3 cut(s)	478, 628, 796
Hpy8I	GTNNAC	3 cut(s)	450, 517, 703
Hpy99I	CGWCG	5 cut(s)	136, 242, 269, 608, 907
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	3 cut(s)	13, 700, 707
HpyCH4IV	ACGT	8 cut(s)	131, 336, 519, 613, 642, 693, 748, 834
HpyCH4V	TGCA	3 cut(s)	649, 818, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 60, 152, 221, 579, 989
HpyF3I	CTNAG	8 cut(s)	98, 225, 243, 284, 318, 674, 781, 810
HpySE526I	ACGT	8 cut(s)	131, 336, 519, 613, 642, 693, 748, 834
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	274, 389, 831, 964
HspAI	GCGC	4 cut(s)	155, 172, 275, 377
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
LmnI	GCTCC	5 cut(s)	59, 107, 143, 201, 260
Lsp1109I	GCAGC	6 cut(s)	74, 444, 447, 606, 802, 830
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	8 cut(s)	131, 336, 519, 613, 642, 693, 748, 834
MaeIII	GTNAC	5 cut(s)	47, 76, 694, 830, 887
MalI	GATC	6 cut(s)	26, 96, 263, 282, 857, 996
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
MboII	GAAGA	2 cut(s)	410, 862
MhlI	GDGCHC	2 cut(s)	65, 257
MluCI	AATT	3 cut(s)	427, 908, 919
MlyI	GAGTC	2 cut(s)	729, 835
MseI	TTAA	2 cut(s)	345, 449
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
MspR9I	CCNGG	3 cut(s)	252, 717, 868
MvnI	CGCG	3 cut(s)	157, 174, 377
MwoI	GCNNNNNNNGC	6 cut(s)	51, 60, 152, 221, 579, 989
NciI	CCSGG	3 cut(s)	252, 717, 868
NdeII	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	274, 389, 831, 964
NlaIV	GGNNCC	4 cut(s)	55, 203, 256, 731
NmeAIII	GCCGAG	2 cut(s)	241, 549
NmuCI	GTSAC	2 cut(s)	76, 694
NspI	RCATGY	2 cut(s)	389, 831
NspV	TTCGAA	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	756
PciI	ACATGT	1 cut(s)	827
PfeI	GAWTC	3 cut(s)	234, 326, 974
PfoI	TCCNGGA	1 cut(s)	866
PkrI	GCNGC	7 cut(s)	89, 214, 459, 462, 596, 817, 820
PleI	GAGTC	2 cut(s)	729, 835
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
PpsI	GAGTC	2 cut(s)	729, 835
Ppu21I	YACGTR	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	729
PscI	ACATGT	1 cut(s)	827
Psp1406I	AACGTT	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	729
PspCI	CACGTG	1 cut(s)	614
PspN4I	GGNNCC	4 cut(s)	55, 203, 256, 731
PspPI	GGNCC	2 cut(s)	187, 729
PspPPI	RGGWCCY	1 cut(s)	729
PstI	CTGCAG	1 cut(s)	820
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	345, 449
SatI	GCNGC	7 cut(s)	88, 213, 458, 461, 595, 816, 819
Sau3AI	GATC	6 cut(s)	24, 94, 261, 280, 855, 994
Sau96I	GGNCC	2 cut(s)	187, 729
SchI	GAGTC	2 cut(s)	729, 835
ScrFI	CCNGG	3 cut(s)	252, 717, 868
SduI	GDGCHC	2 cut(s)	65, 257
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	2 cut(s)	762, 816
SfuI	TTCGAA	1 cut(s)	324
SgrAI	CRCCGGYG	1 cut(s)	494
SinI	GGWCC	2 cut(s)	187, 729
SmiMI	CAYNNNNRTG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	427, 908, 919
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	8 cut(s)	45, 66, 111, 146, 174, 213, 485, 881
SspI	AATATT	1 cut(s)	1001
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	3 cut(s)	250, 715, 866
StyI	CCWWGG	2 cut(s)	502, 654
TaaI	ACNGT	3 cut(s)	13, 700, 707
TaiI	ACGT	8 cut(s)	134, 339, 522, 616, 645, 696, 751, 837
TaqI	TCGA	6 cut(s)	6, 324, 408, 508, 629, 905
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	427, 908, 919
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	3 cut(s)	234, 326, 974
Tru1I	TTAA	2 cut(s)	345, 449
Tru9I	TTAA	2 cut(s)	345, 449
TseFI	GTSAC	2 cut(s)	76, 694
TseI	GCWGC	6 cut(s)	87, 457, 460, 594, 815, 818
Tsp45I	GTSAC	2 cut(s)	76, 694
VpaK11BI	GGWCC	2 cut(s)	187, 729
XceI	RCATGY	2 cut(s)	389, 831
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.