MD06G1113700.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
25186122 .. 25189438
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1113700.v1.1.491

Sequence Viewer

Length: 1014 bp
ATGCTCGACACCGTCAAGTTCCTAATCGGCTCCCCCGGCGCCAGCGGCTACGGCTCAAAGAGTACAGCCGAACAAGTCACCGACGCCTCCCCCGATCTCCGCCACATCACCGCCATCATCACAGGTGCTACGTCAGGGATCGGAGCCGAGACGGCTCGAGTTTTAGCCAAGCGCGGGGCCAAGCTGGTCCTCCCGGCTCGAAGCCTCAAAGCTGCCGAGGATGCCAAGGCTCGAATCCTCTCCGAGTTTCCCGGCTCCGAGATAATCGTCATGGCTCTCGATCTCAGCTCCCTCGCTTCCGTCAGGAGCTTCGCTTCCGAGTTCGAGTCCCTCCGGCTGCCTCTCAATCTTCTCATAAATAATGCCGGAAAGTTCGCGCACGAGCACGCGATTTCCGAAGACGGAATCGAAATGACCTTTGCTACTAATTATCTCGGTCATTTTCTGTTGACGAAGCTGTTGCTCAACACAATGATTGAAACGGCTGCGGCTAGCGGCGTTCAAGGGCGAATCGTGAACGTGTCGTCGGCCATTCACGGCTGGTTTTCTGGCGATATGATCCGATATCTTGGCGAGATAAGCAGAAGTGGAAGCCAGTACGACGAGACACGTGCGTACGCGCTCTCGAAGCTTGCCAACGTCTTGCACACCAAGGAACTCGCTCGCAGACTCAAGGAAATGGAGGCAAACGTGACCGTTAACTGTGTGCATCCGGGTATTGTTAAGACCCGCCTCACCCGAGAACGTGAAGGTCTCGCCACAGATTTGGTGTTCCTGTTTGCTTCAAAGCTCTTGAAAACAATCCCTCAGGCTAGTGCGACGACATGTTATGTTGCGACTCATCCTAGGCTGGTGGGCGTGTCCGGGAAGTACTTTGCTGATTGCAACGAGACATTGCCGTCGAAGATGGGGTCGAACTTAAGCGAAGCTGCTGGATTATGGTCCGCCTCTGAAATCATGGTGTCCAAGGATTCCAGTGCTATCTTGGATCCAAGCCACCAGCTGGAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

36.15

Weight (kDa)

7.16

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 37 - 177 3.8e-26 short chain dehydrogenase
KR PF08659 37 - 154 3.7e-10 KR domain
adh_short_C2 PF13561 42 - 251 1.5e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 898
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 1003
AccII CGCG 4 cut(s) 174, 377, 389, 620
AciI CCGC 8 cut(s) 45, 100, 111, 174, 488, 495, 730, 945
AclWI GGATC 4 cut(s) 146, 553, 983, 996
AcoI YGGCCR 1 cut(s) 528
AcvI CACGTG 1 cut(s) 611
AcyI GRCGYC 2 cut(s) 39, 84
AfaI GTAC 4 cut(s) 64, 599, 617, 872
AfiI CCNNNNNNNGG 2 cut(s) 174, 1003
AflII CTTAAG 1 cut(s) 919
AflIII ACRYGT 3 cut(s) 519, 608, 824
AgsI TTSAA 4 cut(s) 479, 503, 786, 796
AluBI AGCT 9 cut(s) 184, 212, 288, 309, 457, 631, 790, 929, 1003
AluI AGCT 9 cut(s) 184, 212, 288, 309, 457, 631, 790, 929, 1003
Alw21I GWGCWC 2 cut(s) 387, 1011
Alw26I GTCTC 4 cut(s) 143, 599, 758, 884
AlwI GGATC 4 cut(s) 146, 553, 983, 996
Ama87I CYCGRG 2 cut(s) 156, 738
AoxI GGCC 2 cut(s) 177, 528
ApeKI GCWGC 4 cut(s) 212, 337, 485, 929
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspA2I CCTAGG 1 cut(s) 845
AspLEI GCGC 4 cut(s) 41, 174, 379, 622
AspS9I GGNCC 3 cut(s) 177, 187, 942
AsuC2I CCSGG 5 cut(s) 36, 194, 252, 714, 865
AsuHPI GGTGA 3 cut(s) 70, 100, 727
AsuNHI GCTAGC 1 cut(s) 491
AvaI CYCGRG 2 cut(s) 156, 738
AvaII GGWCC 2 cut(s) 187, 942
AvrII CCTAGG 1 cut(s) 845
AxyI CCTNAGG 1 cut(s) 807
BamHI GGATCC 1 cut(s) 988
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 387, 1011
BbvI GCAGC 4 cut(s) 199, 324, 472, 916
BccI CCATC 2 cut(s) 122, 901
BceAI ACGGC 5 cut(s) 67, 168, 498, 553, 883
BcgI CGANNNNNNTGC 4 cut(s) 442, 476, 593, 627
BcnI CCSGG 5 cut(s) 36, 194, 252, 714, 865
BcoDI GTCTC 4 cut(s) 143, 599, 758, 884
BfaI CTAG 3 cut(s) 492, 813, 846
BfoI RGCGCY 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 919
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
BlnI CCTAGG 1 cut(s) 845
BlsI GCNGC 7 cut(s) 47, 214, 339, 487, 490, 497, 931
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 5 cut(s) 36, 194, 252, 714, 865
Bme18I GGWCC 2 cut(s) 187, 942
BmeT110I CYCGRG 2 cut(s) 156, 738
BmgT120I GGNCC 3 cut(s) 177, 187, 942
BmiI GGNNCC 6 cut(s) 31, 40, 145, 178, 256, 990
BmrFI CCNGG 5 cut(s) 36, 194, 252, 714, 865
BmsI GCATC 2 cut(s) 211, 718
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 5 cut(s) 36, 194, 252, 714, 865
BsaAI YACGTR 1 cut(s) 611
BsaHI GRCGYC 2 cut(s) 39, 84
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 6 cut(s) 34, 216, 225, 651, 845, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 1003
Bse1I ACTGG 2 cut(s) 595, 975
Bse21I CCTNAGG 1 cut(s) 807
Bse3DI GCAATG 1 cut(s) 893
BseDI CCNNGG 6 cut(s) 34, 216, 225, 651, 845, 966
BseGI GGATG 3 cut(s) 226, 709, 841
BseLI CCNNNNNNNGG 2 cut(s) 174, 1003
BseMI GCAATG 1 cut(s) 893
BseMII CTCAG 2 cut(s) 298, 821
BseNI ACTGG 2 cut(s) 595, 975
BseXI GCAGC 4 cut(s) 199, 324, 472, 916
Bsh1236I CGCG 4 cut(s) 174, 377, 389, 620
BshFI GGCC 2 cut(s) 179, 530
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 387, 1011
BsiHKCI CYCGRG 2 cut(s) 156, 738
BsiSI CCGG 7 cut(s) 36, 194, 252, 334, 366, 713, 864
BsiWI CGTACG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 174, 1003
BsmAI GTCTC 4 cut(s) 143, 599, 758, 884
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 2 cut(s) 179, 530
Bso31I GGTCTC 1 cut(s) 758
BsoBI CYCGRG 2 cut(s) 156, 738
Bsp1286I GDGCHC 2 cut(s) 387, 1011
Bsp143I GATC 5 cut(s) 94, 138, 280, 558, 988
BspACI CCGC 8 cut(s) 45, 100, 111, 174, 488, 495, 730, 945
BspANI GGCC 2 cut(s) 179, 530
BspCNI CTCAG 2 cut(s) 297, 820
BspFNI CGCG 4 cut(s) 174, 377, 389, 620
BspLI GGNNCC 6 cut(s) 31, 40, 145, 178, 256, 990
BspOI GCTAGC 1 cut(s) 495
BspPI GGATC 4 cut(s) 146, 553, 983, 996
BspT107I GGYRCC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 919
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 893
BsrI ACTGG 2 cut(s) 595, 975
BssECI CCNNGG 6 cut(s) 34, 216, 225, 651, 845, 966
BssMI GATC 5 cut(s) 94, 138, 280, 558, 988
BssNI GRCGYC 2 cut(s) 39, 84
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 4 cut(s) 225, 651, 845, 966
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 13, 697, 704
BstACI GRCGYC 2 cut(s) 39, 84
BstAFI CTTAAG 1 cut(s) 919
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 5 cut(s) 43, 387, 493, 633, 664
BstDEI CTNAG 2 cut(s) 284, 807
BstF5I GGATG 3 cut(s) 226, 709, 841
BstFNI CGCG 4 cut(s) 174, 377, 389, 620
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 4 cut(s) 41, 174, 379, 622
BstKTI GATC 5 cut(s) 97, 141, 283, 561, 991
BstMAI GTCTC 4 cut(s) 143, 599, 758, 884
BstMBI GATC 5 cut(s) 94, 138, 280, 558, 988
BstMWI GCNNNNNNNGC 7 cut(s) 36, 45, 51, 152, 221, 579, 628
BstNSI RCATGY 1 cut(s) 828
BstSCI CCNGG 5 cut(s) 34, 192, 250, 712, 863
BstUI CGCG 4 cut(s) 174, 377, 389, 620
BstV1I GCAGC 4 cut(s) 199, 324, 472, 916
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 988
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 988
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 2 cut(s) 179, 530
BtsCI GGATG 3 cut(s) 226, 709, 841
BtsIMutI CAGTG 1 cut(s) 982
Cac8I GCNNGC 5 cut(s) 43, 387, 493, 633, 664
CfoI GCGC 4 cut(s) 41, 174, 379, 622
Cfr13I GGNCC 3 cut(s) 177, 187, 942
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 63, 598, 616, 871
CviAII CATG 3 cut(s) 271, 825, 958
CviQI GTAC 4 cut(s) 63, 598, 616, 871
DdeI CTNAG 2 cut(s) 284, 807
DinI GGCGCC 1 cut(s) 40
DpnI GATC 5 cut(s) 96, 140, 282, 560, 990
DpnII GATC 5 cut(s) 94, 138, 280, 558, 988
DrdI GACNNNNNNGTC 1 cut(s) 898
DseDI GACNNNNNNGTC 1 cut(s) 898
EaeI YGGCCR 1 cut(s) 528
EciI GGCGGA 2 cut(s) 89, 934
Eco130I CCWWGG 4 cut(s) 225, 651, 845, 966
Eco31I GGTCTC 1 cut(s) 758
Eco32I GATATC 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 187, 942
Eco72I CACGTG 1 cut(s) 611
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 2 cut(s) 156, 738
EcoRV GATATC 1 cut(s) 566
EcoT14I CCWWGG 4 cut(s) 225, 651, 845, 966
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 4 cut(s) 225, 651, 845, 966
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 274, 828, 961
FaiI YATR 7 cut(s) 272, 356, 557, 826, 831, 940, 959
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 270, 824, 957
FauI CCCGC 2 cut(s) 167, 737
Fnu4HI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
FokI GGATG 3 cut(s) 233, 696, 828
Fsp4HI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
FspBI CTAG 3 cut(s) 492, 813, 846
GlaI GCGC 4 cut(s) 40, 173, 378, 621
GluI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 2 cut(s) 179, 530
HapII CCGG 7 cut(s) 36, 194, 252, 334, 366, 713, 864
HgaI GACGC 1 cut(s) 92
HhaI GCGC 4 cut(s) 41, 174, 379, 622
Hin1I GRCGYC 2 cut(s) 39, 84
Hin1II CATG 3 cut(s) 274, 828, 961
Hin6I GCGC 4 cut(s) 39, 172, 377, 620
HinP1I GCGC 4 cut(s) 39, 172, 377, 620
HincII GTYRAC 2 cut(s) 450, 700
HindII GTYRAC 2 cut(s) 450, 700
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 7 cut(s) 234, 326, 405, 510, 669, 838, 971
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 7 cut(s) 36, 194, 252, 334, 366, 713, 864
HphI GGTGA 3 cut(s) 70, 100, 727
Hpy166II GTNNAC 3 cut(s) 450, 517, 700
Hpy188I TCNGA 7 cut(s) 143, 244, 259, 319, 397, 563, 952
Hpy188III TCNNGA 5 cut(s) 278, 304, 514, 625, 793
Hpy8I GTNNAC 3 cut(s) 450, 517, 700
Hpy99I CGWCG 5 cut(s) 86, 529, 605, 823, 904
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 3 cut(s) 13, 697, 704
HpyCH4IV ACGT 6 cut(s) 131, 519, 610, 639, 690, 745
HpyCH4V TGCA 3 cut(s) 646, 709, 885
HpyF10VI GCNNNNNNNGC 7 cut(s) 36, 45, 51, 152, 221, 579, 628
HpyF3I CTNAG 2 cut(s) 284, 807
HpySE526I ACGT 6 cut(s) 131, 519, 610, 639, 690, 745
Hsp92I GRCGYC 2 cut(s) 39, 84
Hsp92II CATG 3 cut(s) 274, 828, 961
HspAI GCGC 4 cut(s) 39, 172, 377, 620
KasI GGCGCC 1 cut(s) 38
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 5 cut(s) 94, 138, 280, 558, 988
LmnI GCTCC 6 cut(s) 35, 143, 260, 293, 306, 1006
Lsp1109I GCAGC 4 cut(s) 199, 324, 472, 916
LweI GCATC 2 cut(s) 211, 718
MaeI CTAG 3 cut(s) 492, 813, 846
MaeII ACGT 6 cut(s) 131, 519, 610, 639, 690, 745
MaeIII GTNAC 2 cut(s) 76, 691
MalI GATC 5 cut(s) 96, 140, 282, 560, 990
MboI GATC 5 cut(s) 94, 138, 280, 558, 988
MboII GAAGA 3 cut(s) 341, 410, 916
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 2 cut(s) 387, 1011
MluCI AATT 1 cut(s) 427
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 3 cut(s) 335, 663, 832
MseI TTAA 3 cut(s) 699, 723, 920
MspA1I CMGCKG 2 cut(s) 45, 1003
MspCI CTTAAG 1 cut(s) 919
MspI CCGG 7 cut(s) 36, 194, 252, 334, 366, 713, 864
MspR9I CCNGG 5 cut(s) 36, 194, 252, 714, 865
MvnI CGCG 4 cut(s) 174, 377, 389, 620
MwoI GCNNNNNNNGC 7 cut(s) 36, 45, 51, 152, 221, 579, 628
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 5 cut(s) 36, 194, 252, 714, 865
NdeII GATC 5 cut(s) 94, 138, 280, 558, 988
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 3 cut(s) 274, 828, 961
NlaIV GGNNCC 6 cut(s) 31, 40, 145, 178, 256, 990
NmeAIII GCCGAG 2 cut(s) 172, 241
NmuCI GTSAC 2 cut(s) 76, 691
NspI RCATGY 1 cut(s) 828
PaeR7I CTCGAG 1 cut(s) 156
PciI ACATGT 1 cut(s) 824
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 393
PfeI GAWTC 4 cut(s) 234, 405, 510, 971
Pfl23II CGTACG 1 cut(s) 615
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 1003
PfoI TCCNGGA 1 cut(s) 863
PkrI GCNGC 7 cut(s) 47, 214, 339, 487, 490, 497, 931
PleI GAGTC 3 cut(s) 334, 663, 832
PluTI GGCGCC 1 cut(s) 42
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 3 cut(s) 334, 663, 832
Ppu21I YACGTR 1 cut(s) 611
PscI ACATGT 1 cut(s) 824
PspCI CACGTG 1 cut(s) 611
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 6 cut(s) 31, 40, 145, 178, 256, 990
PspPI GGNCC 3 cut(s) 177, 187, 942
PspXI VCTCGAGB 1 cut(s) 156
PsuI RGATCY 1 cut(s) 988
PsyI GACNNNGTC 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 4 cut(s) 64, 599, 617, 872
RsaNI GTAC 4 cut(s) 63, 598, 616, 871
SaqAI TTAA 3 cut(s) 699, 723, 920
SatI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
Sau3AI GATC 5 cut(s) 94, 138, 280, 558, 988
Sau96I GGNCC 3 cut(s) 177, 187, 942
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 3 cut(s) 335, 663, 832
ScrFI CCNGG 5 cut(s) 36, 194, 252, 714, 865
SduI GDGCHC 2 cut(s) 387, 1011
SfaNI GCATC 2 cut(s) 211, 718
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 2 cut(s) 187, 942
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 3 cut(s) 156, 671, 919
SmoI CTYRAG 3 cut(s) 156, 671, 919
Sse9I AATT 1 cut(s) 427
SsiI CCGC 8 cut(s) 45, 100, 111, 174, 488, 495, 730, 945
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 3 cut(s) 492, 813, 846
StyD4I CCNGG 5 cut(s) 34, 192, 250, 712, 863
StyI CCWWGG 4 cut(s) 225, 651, 845, 966
TaaI ACNGT 3 cut(s) 13, 697, 704
TaiI ACGT 6 cut(s) 134, 522, 613, 642, 693, 748
TaqII GACCGA 1 cut(s) 425
TasI AATT 1 cut(s) 427
TatI WGTACW 2 cut(s) 62, 870
TauI GCSGC 3 cut(s) 48, 491, 498
TfiI GAWTC 4 cut(s) 234, 405, 510, 971
Tru1I TTAA 3 cut(s) 699, 723, 920
Tru9I TTAA 3 cut(s) 699, 723, 920
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 2 cut(s) 76, 691
TseI GCWGC 4 cut(s) 212, 337, 485, 929
Tsp45I GTSAC 2 cut(s) 76, 691
TspGWI ACGGA 2 cut(s) 289, 417
TspRI CASTG 1 cut(s) 982
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 1003
Vha464I CTTAAG 1 cut(s) 919
VpaK11BI GGWCC 2 cut(s) 187, 942
XceI RCATGY 1 cut(s) 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XhoI CTCGAG 1 cut(s) 156
XmaJI CCTAGG 1 cut(s) 845
XspI CTAG 3 cut(s) 492, 813, 846
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.