Rw7G006990

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009222
Physical Location & Seq
Forward (+)
6032421 .. 6034908
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006990.1

Sequence Viewer

Length: 819 bp
ATGCTCGAAACCGTGAAGTACCTGATCGGCTCCGTCGGCACCAGCGGTTACGGCTCCAAGAGCACCGCGGAGCAAGTCACCGACAGCTGCCCCGATCTCCGCTCCATCACCGCCATCATCACAGGTGCTACGTCGGGGATCGGAGCAGAGACTGCGCGAGTGTTAGCGAAGCGCGGCGCCAAGCTAGTCCTCCCCGCTCGGAGCCTTAAAGCCGCCGAGGACGCCAAGGCGCGAATCCTCTCCGAGTTTCCGGACTCGGAGATCATTGTCATGGCGCTTGATCTCAGCTCCCTTGCTTCCGTTAGAAACTTCGTGTCGGAGTTCGAGTCCCTCCACCTACCTCTTAATCTCCTCATAAACAACGCCGGTAAGTTCGCGCACGAGCATGCGATTTCCGAAGACGGAATAGAAATGACTTTTGCTACTAATTATCTGGGTCATTTTCTGTTGACGAAGCTGCTGCTGAACAAGATGATCCAAACAGCGAAGGCCACCGGCGTCCAAGGGCGAATAGTGAACGTGTCGTCTGCTATTCACGGCTGGTTTTCCGGAGATACAATCCGATACCTCGGCGAGATAAGCCGGAGCAGAAGCAGCCAATACGACGAGACACGTGCGTATGCGCTCTCGAAGCTCGCCAACGTTTTGCACACGAAGGAACTCGGTCGCAGGCTCAGGGAAATGGAGGCCAACGTGACTGTGAACTGTGTGCATCCGGGGATTGTTAGGACCCGACTCACCAGAGAACGTGAAGGCTTTGCTACTGGTGTGGCTTATATTTTTAATTTGGGAAGAACAATGTTAATTTTGGGGTTTTAA

Protein Analysis

272

Amino Acids

29.62

Weight (kDa)

9.22

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 37 - 177 2.1e-27 short chain dehydrogenase
KR PF08659 37 - 129 4.8e-10 KR domain
Epimerase PF01370 39 - 225 8.3e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 42 - 254 1.1e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 176
AccBSI CCGCTC 2 cut(s) 102, 197
AccII CGCG 5 cut(s) 68, 157, 174, 232, 377
AccIII TCCGGA 2 cut(s) 250, 548
AciI CCGC 8 cut(s) 45, 66, 68, 100, 111, 174, 195, 213
AclI AACGTT 1 cut(s) 642
AclWI GGATC 2 cut(s) 146, 469
AcvI CACGTG 1 cut(s) 614
AcyI GRCGYC 3 cut(s) 177, 222, 498
AfaI GTAC 1 cut(s) 20
AflIII ACRYGT 2 cut(s) 519, 611
AluBI AGCT 5 cut(s) 87, 184, 288, 457, 634
AluI AGCT 5 cut(s) 87, 184, 288, 457, 634
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 143, 602
AlwI GGATC 2 cut(s) 146, 469
AlwNI CAGNNNCTG 1 cut(s) 152
Aor13HI TCCGGA 2 cut(s) 250, 548
AoxI GGCC 2 cut(s) 489, 687
ApeKI GCWGC 4 cut(s) 87, 457, 460, 594
AspLEI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 625
AspS9I GGNCC 1 cut(s) 729
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 3 cut(s) 70, 100, 730
AvaII GGWCC 1 cut(s) 729
BanI GGYRCC 2 cut(s) 38, 176
BauI CACGAG 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 74, 444, 447, 606
BccI CCATC 2 cut(s) 113, 122
BceAI ACGGC 2 cut(s) 67, 553
BcgI CGANNNNNNTGC 4 cut(s) 442, 476, 596, 630
BcnI CCSGG 1 cut(s) 717
BcoDI GTCTC 2 cut(s) 143, 602
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 2 cut(s) 180, 278
BisI GCNGC 6 cut(s) 88, 175, 213, 458, 461, 595
BlsI GCNGC 6 cut(s) 89, 176, 214, 459, 462, 596
Bme1390I CCNGG 1 cut(s) 717
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 729
BmiI GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 731
BmrFI CCNGG 1 cut(s) 717
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 717
BsaAI YACGTR 1 cut(s) 614
BsaHI GRCGYC 3 cut(s) 177, 222, 498
BsaJI CCNNGG 6 cut(s) 66, 216, 225, 502, 568, 716
BsaWI WCCGGW 2 cut(s) 250, 548
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse118I RCCGGY 2 cut(s) 365, 494
Bse1I ACTGG 1 cut(s) 769
BseAI TCCGGA 2 cut(s) 250, 548
BseDI CCNNGG 6 cut(s) 66, 216, 225, 502, 568, 716
BseGI GGATG 1 cut(s) 712
BseMII CTCAG 2 cut(s) 298, 688
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 4 cut(s) 74, 444, 447, 606
Bsh1236I CGCG 5 cut(s) 68, 157, 174, 232, 377
Bsh1285I CGRYCG 1 cut(s) 667
BshFI GGCC 2 cut(s) 491, 689
BshNI GGYRCC 2 cut(s) 38, 176
BsiEI CGRYCG 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 6 cut(s) 251, 366, 495, 549, 583, 716
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 143, 602
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 2 cut(s) 491, 689
Bsp1286I GDGCHC 1 cut(s) 65
Bsp13I TCCGGA 2 cut(s) 250, 548
Bsp143I GATC 6 cut(s) 24, 94, 138, 261, 280, 474
BspACI CCGC 8 cut(s) 45, 66, 68, 100, 111, 174, 195, 213
BspANI GGCC 2 cut(s) 491, 689
BspCNI CTCAG 2 cut(s) 297, 687
BspEI TCCGGA 2 cut(s) 250, 548
BspFNI CGCG 5 cut(s) 68, 157, 174, 232, 377
BspLI GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 731
BspPI GGATC 2 cut(s) 146, 469
BspT107I GGYRCC 2 cut(s) 38, 176
BsrBI CCGCTC 2 cut(s) 102, 197
BsrFI RCCGGY 2 cut(s) 365, 494
BsrI ACTGG 1 cut(s) 769
BssAI RCCGGY 2 cut(s) 365, 494
BssECI CCNNGG 6 cut(s) 66, 216, 225, 502, 568, 716
BssMI GATC 6 cut(s) 24, 94, 138, 261, 280, 474
BssNI GRCGYC 3 cut(s) 177, 222, 498
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 225, 502
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 13, 700, 707
BstACI GRCGYC 3 cut(s) 177, 222, 498
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 3 cut(s) 387, 636, 671
BstDEI CTNAG 2 cut(s) 284, 674
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 712
BstFNI CGCG 5 cut(s) 68, 157, 174, 232, 377
BstH2I RGCGCY 2 cut(s) 180, 278
BstHHI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 625
BstKTI GATC 6 cut(s) 27, 97, 141, 264, 283, 477
BstMAI GTCTC 2 cut(s) 143, 602
BstMBI GATC 6 cut(s) 24, 94, 138, 261, 280, 474
BstMCI CGRYCG 1 cut(s) 667
BstMWI GCNNNNNNNGC 8 cut(s) 36, 51, 60, 152, 221, 579, 594, 631
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 715
BstUI CGCG 5 cut(s) 68, 157, 174, 232, 377
BstV1I GCAGC 4 cut(s) 74, 444, 447, 606
BstV2I GAAGAC 1 cut(s) 405
BsuRI GGCC 2 cut(s) 491, 689
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 712
Cac8I GCNNGC 3 cut(s) 387, 636, 671
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 625
Cfr10I RCCGGY 2 cut(s) 365, 494
Cfr13I GGNCC 1 cut(s) 729
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 2 cut(s) 230, 487
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 271, 386
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 2 cut(s) 284, 674
DinI GGCGCC 1 cut(s) 178
DpnI GATC 6 cut(s) 26, 96, 140, 263, 282, 476
DpnII GATC 6 cut(s) 24, 94, 138, 261, 280, 474
Eco130I CCWWGG 2 cut(s) 225, 502
Eco47I GGWCC 1 cut(s) 729
Eco72I CACGTG 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 729
EcoT14I CCWWGG 2 cut(s) 225, 502
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 225, 502
FaeI CATG 2 cut(s) 274, 389
FaiI YATR 5 cut(s) 272, 356, 387, 621, 777
FaqI GGGAC 1 cut(s) 313
FatI CATG 2 cut(s) 270, 385
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 6 cut(s) 88, 175, 213, 458, 461, 595
FokI GGATG 1 cut(s) 699
Fsp4HI GCNGC 6 cut(s) 88, 175, 213, 458, 461, 595
FspBI CTAG 1 cut(s) 185
GlaI GCGC 7 cut(s) 156, 173, 178, 231, 276, 378, 624
GluI GCNGC 6 cut(s) 88, 175, 213, 458, 461, 595
HaeII RGCGCY 2 cut(s) 180, 278
HaeIII GGCC 2 cut(s) 491, 689
HapII CCGG 6 cut(s) 251, 366, 495, 549, 583, 716
HgaI GACGC 2 cut(s) 230, 487
HhaI GCGC 7 cut(s) 157, 174, 179, 232, 277, 379, 625
Hin1I GRCGYC 3 cut(s) 177, 222, 498
Hin1II CATG 2 cut(s) 274, 389
Hin6I GCGC 7 cut(s) 155, 172, 177, 230, 275, 377, 623
HinP1I GCGC 7 cut(s) 155, 172, 177, 230, 275, 377, 623
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 4 cut(s) 234, 254, 326, 735
HpaII CCGG 6 cut(s) 251, 366, 495, 549, 583, 716
HphI GGTGA 3 cut(s) 70, 100, 730
Hpy166II GTNNAC 3 cut(s) 450, 517, 703
Hpy188I TCNGA 7 cut(s) 143, 201, 244, 259, 319, 397, 563
Hpy188III TCNNGA 3 cut(s) 251, 549, 628
Hpy8I GTNNAC 3 cut(s) 450, 517, 703
Hpy99I CGWCG 3 cut(s) 38, 136, 608
HpyAV CCTTC 3 cut(s) 481, 649, 746
HpyCH4III ACNGT 3 cut(s) 13, 700, 707
HpyCH4IV ACGT 6 cut(s) 131, 519, 613, 642, 693, 748
HpyCH4V TGCA 2 cut(s) 649, 712
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 51, 60, 152, 221, 579, 594, 631
HpyF3I CTNAG 2 cut(s) 284, 674
HpySE526I ACGT 6 cut(s) 131, 519, 613, 642, 693, 748
Hsp92I GRCGYC 3 cut(s) 177, 222, 498
Hsp92II CATG 2 cut(s) 274, 389
HspAI GCGC 7 cut(s) 155, 172, 177, 230, 275, 377, 623
KasI GGCGCC 1 cut(s) 176
Kpn2I TCCGGA 2 cut(s) 250, 548
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 6 cut(s) 24, 94, 138, 261, 280, 474
LmnI GCTCC 8 cut(s) 35, 59, 70, 107, 143, 201, 293, 585
Lsp1109I GCAGC 4 cut(s) 74, 444, 447, 606
LweI GCATC 1 cut(s) 721
MaeI CTAG 1 cut(s) 185
MaeII ACGT 6 cut(s) 131, 519, 613, 642, 693, 748
MaeIII GTNAC 3 cut(s) 47, 76, 694
MalI GATC 6 cut(s) 26, 96, 140, 263, 282, 476
MbiI CCGCTC 2 cut(s) 102, 197
MboI GATC 6 cut(s) 24, 94, 138, 261, 280, 474
MboII GAAGA 2 cut(s) 410, 804
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 3 cut(s) 427, 784, 804
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 3 cut(s) 248, 335, 729
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 8 cut(s) 200, 211, 248, 341, 351, 362, 578, 679
MroI TCCGGA 2 cut(s) 250, 548
MseI TTAA 5 cut(s) 207, 345, 783, 803, 817
MslI CAYNNNNRTG 2 cut(s) 269, 384
MspA1I CMGCKG 3 cut(s) 45, 68, 87
MspI CCGG 6 cut(s) 251, 366, 495, 549, 583, 716
MspR9I CCNGG 1 cut(s) 717
MteI GCGCNGCGC 1 cut(s) 175
MvnI CGCG 5 cut(s) 68, 157, 174, 232, 377
MwoI GCNNNNNNNGC 8 cut(s) 36, 51, 60, 152, 221, 579, 594, 631
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 1 cut(s) 717
NdeII GATC 6 cut(s) 24, 94, 138, 261, 280, 474
NlaIII CATG 2 cut(s) 274, 389
NlaIV GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 731
NmeAIII GCCGAG 2 cut(s) 241, 549
NmuCI GTSAC 2 cut(s) 76, 694
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 6 cut(s) 89, 176, 214, 459, 462, 596
PleI GAGTC 3 cut(s) 248, 334, 729
PluTI GGCGCC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 614
PmlI CACGTG 1 cut(s) 614
PpsI GAGTC 3 cut(s) 248, 334, 729
Ppu21I YACGTR 1 cut(s) 614
PpuMI RGGWCCY 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 729
PspCI CACGTG 1 cut(s) 614
PspN4I GGNNCC 6 cut(s) 31, 40, 55, 178, 203, 731
PspPI GGNCC 1 cut(s) 729
PspPPI RGGWCCY 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 269, 384
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 5 cut(s) 207, 345, 783, 803, 817
SatI GCNGC 6 cut(s) 88, 175, 213, 458, 461, 595
Sau3AI GATC 6 cut(s) 24, 94, 138, 261, 280, 474
Sau96I GGNCC 1 cut(s) 729
SchI GAGTC 3 cut(s) 248, 335, 729
ScrFI CCNGG 1 cut(s) 717
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 1 cut(s) 721
SfoI GGCGCC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 494
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 269, 384
SphI GCATGC 1 cut(s) 389
Sse9I AATT 3 cut(s) 427, 784, 804
SsiI CCGC 8 cut(s) 45, 66, 68, 100, 111, 174, 195, 213
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 715
StyI CCWWGG 2 cut(s) 225, 502
TaaI ACNGT 3 cut(s) 13, 700, 707
TaiI ACGT 6 cut(s) 134, 522, 616, 645, 696, 751
TaqI TCGA 3 cut(s) 6, 324, 629
TaqII GACCGA 1 cut(s) 653
TasI AATT 3 cut(s) 427, 784, 804
TauI GCSGC 2 cut(s) 177, 215
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 5 cut(s) 207, 345, 783, 803, 817
Tru9I TTAA 5 cut(s) 207, 345, 783, 803, 817
TseFI GTSAC 2 cut(s) 76, 694
TseI GCWGC 4 cut(s) 87, 457, 460, 594
Tsp45I GTSAC 2 cut(s) 76, 694
TspGWI ACGGA 3 cut(s) 22, 289, 417
VpaK11BI GGWCC 1 cut(s) 729
XceI RCATGY 1 cut(s) 389
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.