pycom06g10620

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009222
Physical Location & Seq
Forward (+)
15908838 .. 15910941
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10620.5

Sequence Viewer

Length: 1014 bp
ATGCTCGACACCGTCAAGTACCTAATCGGCTCCCCCGGCGCCAGCGGCTACGGCTCAAAGAGTACAGCCGAGCAAGTCACCGACGCCTCCCCCGATCTCCGCCACATCACCGCCATCATTACAGGTGCTACGTCAGGGATCGGAGCTGAGACGGCTCGAGTTTTAGCCAAGCGCGGGGCCAAGCTGGTCCTCCCGGCTCGAAGCCTCAAAGCCGCCGAGGACGCTAAGGCTCGAATCCTTTCCGAGTTTCCCGGCTCCGAGATCATCGTCATGGCTCTCGATCTCAGCTCCCTCGCTTCCGTCAGGAGCTTCGCCTCCGAGTTCGAGTCCCTCCGGCTGCCTTTCAATCTCCTCGTAAATAATGCCGGAAAGTTCGCGCACGAGCACGCGATTTCCGAAGACGGAATCGAAATGACCTTTGCTACTAATTATCTCGGTCATTTTCTCTTGACGAAGCTGTTGCTCAACACAATGATTGAAACGGCTGCGGCTAGCGGCGTTCAAGGGCGAATCGTGAACGTGTCGTCGGCCATTCACGGCTGGTTTTCCGGCGATATGATCCGATATCTTGGCGAGATAAGCAGAAGTGGAAGCCAGTACGACGAGACGCGTGCGTACGCACTCTCGAAGCTCGCCAACGTCTTGCACACCAAGGAACTCGCTCGCAGACTCAAGGAAACGGAGGCCAACGTGACCGTCAACTGCGTACATCCGGGTATTGTTAAGACCCGCCTCACCCGAGAACGTGAAGGTCTTGCCACAGATTTGGTGTTCCTGTTCGCTTCAAAGCTCTTGAAAACAATCCCTCAGGCTAGTGCGACGACATGTTATGTTGCGACTCATCCTAGGCTGGTGGGCGTGTCTGGGAAGTACTTTGCTGATTGCAACGAGACATCACCGTCGAAGATGGGGTCGAACTTAAGCGAAGCTGCTGGATTATGGTCCGCCTCTGAAATCATGGTGTCCAAGGATTCCAGTGCTATCTTGGATCCAAGCCACCAGCTGGAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

338

Amino Acids

36.13

Weight (kDa)

7.16

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 898
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 1003
AccII CGCG 4 cut(s) 174, 377, 389, 610
AciI CCGC 9 cut(s) 45, 100, 111, 174, 213, 488, 495, 730, 945
AclWI GGATC 4 cut(s) 146, 553, 983, 996
AcoI YGGCCR 1 cut(s) 528
AcyI GRCGYC 2 cut(s) 39, 84
AfaI GTAC 6 cut(s) 20, 64, 599, 617, 708, 872
AfiI CCNNNNNNNGG 2 cut(s) 174, 1003
AflII CTTAAG 1 cut(s) 919
AflIII ACRYGT 3 cut(s) 519, 608, 824
AgsI TTSAA 5 cut(s) 346, 479, 503, 786, 796
AluBI AGCT 9 cut(s) 146, 184, 288, 309, 457, 631, 790, 929, 1003
AluI AGCT 9 cut(s) 146, 184, 288, 309, 457, 631, 790, 929, 1003
Alw21I GWGCWC 2 cut(s) 387, 1011
Alw26I GTCTC 3 cut(s) 143, 599, 884
AlwI GGATC 4 cut(s) 146, 553, 983, 996
Ama87I CYCGRG 2 cut(s) 156, 738
AoxI GGCC 3 cut(s) 177, 528, 684
ApeKI GCWGC 3 cut(s) 337, 485, 929
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
Asp700I GAANNNNTTC 1 cut(s) 238
AspA2I CCTAGG 1 cut(s) 845
AspLEI GCGC 3 cut(s) 41, 174, 379
AspS9I GGNCC 3 cut(s) 177, 187, 942
AsuC2I CCSGG 4 cut(s) 36, 194, 252, 714
AsuHPI GGTGA 4 cut(s) 70, 100, 727, 888
AsuNHI GCTAGC 1 cut(s) 491
AvaI CYCGRG 2 cut(s) 156, 738
AvaII GGWCC 2 cut(s) 187, 942
AvrII CCTAGG 1 cut(s) 845
AxyI CCTNAGG 1 cut(s) 807
BamHI GGATCC 1 cut(s) 988
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 387, 1011
BbvI GCAGC 3 cut(s) 324, 472, 916
BccI CCATC 2 cut(s) 122, 901
BceAI ACGGC 4 cut(s) 67, 168, 498, 553
BcgI CGANNNNNNTGC 4 cut(s) 442, 476, 593, 627
BcnI CCSGG 4 cut(s) 36, 194, 252, 714
BcoDI GTCTC 3 cut(s) 143, 599, 884
BfaI CTAG 3 cut(s) 492, 813, 846
BfoI RGCGCY 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 919
BisI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
BlnI CCTAGG 1 cut(s) 845
BlsI GCNGC 7 cut(s) 47, 214, 339, 487, 490, 497, 931
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 4 cut(s) 36, 194, 252, 714
Bme18I GGWCC 2 cut(s) 187, 942
BmeT110I CYCGRG 2 cut(s) 156, 738
BmgT120I GGNCC 3 cut(s) 177, 187, 942
BmiI GGNNCC 5 cut(s) 31, 40, 178, 256, 990
BmrFI CCNGG 4 cut(s) 36, 194, 252, 714
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 4 cut(s) 36, 194, 252, 714
BsaHI GRCGYC 2 cut(s) 39, 84
BsaJI CCNNGG 5 cut(s) 34, 216, 651, 845, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 1003
Bse1I ACTGG 2 cut(s) 595, 975
Bse21I CCTNAGG 1 cut(s) 807
BseDI CCNNGG 5 cut(s) 34, 216, 651, 845, 966
BseGI GGATG 2 cut(s) 709, 841
BseLI CCNNNNNNNGG 2 cut(s) 174, 1003
BseMII CTCAG 3 cut(s) 138, 298, 821
BseNI ACTGG 2 cut(s) 595, 975
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 3 cut(s) 324, 472, 916
Bsh1236I CGCG 4 cut(s) 174, 377, 389, 610
BshFI GGCC 3 cut(s) 179, 530, 686
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 387, 1011
BsiHKCI CYCGRG 2 cut(s) 156, 738
BsiSI CCGG 7 cut(s) 36, 194, 252, 334, 366, 549, 713
BsiWI CGTACG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 174, 1003
BsmAI GTCTC 3 cut(s) 143, 599, 884
BsmBI CGTCTC 2 cut(s) 143, 599
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 3 cut(s) 179, 530, 686
BsoBI CYCGRG 2 cut(s) 156, 738
Bsp1286I GDGCHC 2 cut(s) 387, 1011
Bsp143I GATC 6 cut(s) 94, 138, 261, 280, 558, 988
BspACI CCGC 9 cut(s) 45, 100, 111, 174, 213, 488, 495, 730, 945
BspANI GGCC 3 cut(s) 179, 530, 686
BspCNI CTCAG 3 cut(s) 139, 297, 820
BspFNI CGCG 4 cut(s) 174, 377, 389, 610
BspLI GGNNCC 5 cut(s) 31, 40, 178, 256, 990
BspOI GCTAGC 1 cut(s) 495
BspPI GGATC 4 cut(s) 146, 553, 983, 996
BspT107I GGYRCC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 919
BsrI ACTGG 2 cut(s) 595, 975
BssECI CCNNGG 5 cut(s) 34, 216, 651, 845, 966
BssMI GATC 6 cut(s) 94, 138, 261, 280, 558, 988
BssNI GRCGYC 2 cut(s) 39, 84
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 3 cut(s) 651, 845, 966
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 13, 697, 900
BstACI GRCGYC 2 cut(s) 39, 84
BstAFI CTTAAG 1 cut(s) 919
BstC8I GCNNGC 6 cut(s) 43, 387, 493, 612, 633, 664
BstDEI CTNAG 4 cut(s) 147, 225, 284, 807
BstF5I GGATG 2 cut(s) 709, 841
BstFNI CGCG 4 cut(s) 174, 377, 389, 610
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 3 cut(s) 41, 174, 379
BstKTI GATC 6 cut(s) 97, 141, 264, 283, 561, 991
BstMAI GTCTC 3 cut(s) 143, 599, 884
BstMBI GATC 6 cut(s) 94, 138, 261, 280, 558, 988
BstMWI GCNNNNNNNGC 6 cut(s) 36, 45, 51, 152, 221, 579
BstNSI RCATGY 1 cut(s) 828
BstSCI CCNGG 4 cut(s) 34, 192, 250, 712
BstUI CGCG 4 cut(s) 174, 377, 389, 610
BstV1I GCAGC 3 cut(s) 324, 472, 916
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 988
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 988
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 3 cut(s) 179, 530, 686
BtsCI GGATG 2 cut(s) 709, 841
BtsIMutI CAGTG 1 cut(s) 982
Cac8I GCNNGC 6 cut(s) 43, 387, 493, 612, 633, 664
CfoI GCGC 3 cut(s) 41, 174, 379
Cfr13I GGNCC 3 cut(s) 177, 187, 942
CseI GACGC 3 cut(s) 92, 230, 616
Csp6I GTAC 6 cut(s) 19, 63, 598, 616, 707, 871
CviAII CATG 3 cut(s) 271, 825, 958
CviQI GTAC 6 cut(s) 19, 63, 598, 616, 707, 871
DdeI CTNAG 4 cut(s) 147, 225, 284, 807
DinI GGCGCC 1 cut(s) 40
DpnI GATC 6 cut(s) 96, 140, 263, 282, 560, 990
DpnII GATC 6 cut(s) 94, 138, 261, 280, 558, 988
DrdI GACNNNNNNGTC 1 cut(s) 898
DseDI GACNNNNNNGTC 1 cut(s) 898
EaeI YGGCCR 1 cut(s) 528
EciI GGCGGA 2 cut(s) 89, 934
Eco130I CCWWGG 3 cut(s) 651, 845, 966
Eco32I GATATC 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 187, 942
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 2 cut(s) 156, 738
EcoRV GATATC 1 cut(s) 566
EcoT14I CCWWGG 3 cut(s) 651, 845, 966
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 3 cut(s) 651, 845, 966
Esp3I CGTCTC 2 cut(s) 143, 599
FaeI CATG 3 cut(s) 274, 828, 961
FaiI YATR 6 cut(s) 272, 557, 826, 831, 940, 959
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 270, 824, 957
FauI CCCGC 2 cut(s) 167, 737
Fnu4HI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
FokI GGATG 2 cut(s) 696, 828
Fsp4HI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
FspBI CTAG 3 cut(s) 492, 813, 846
GlaI GCGC 3 cut(s) 40, 173, 378
GluI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 179, 530, 686
HapII CCGG 7 cut(s) 36, 194, 252, 334, 366, 549, 713
HgaI GACGC 3 cut(s) 92, 230, 616
HhaI GCGC 3 cut(s) 41, 174, 379
Hin1I GRCGYC 2 cut(s) 39, 84
Hin1II CATG 3 cut(s) 274, 828, 961
Hin6I GCGC 3 cut(s) 39, 172, 377
HinP1I GCGC 3 cut(s) 39, 172, 377
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 7 cut(s) 234, 326, 405, 510, 669, 838, 971
HpaII CCGG 7 cut(s) 36, 194, 252, 334, 366, 549, 713
HphI GGTGA 4 cut(s) 70, 100, 727, 888
Hpy166II GTNNAC 2 cut(s) 517, 700
Hpy188I TCNGA 7 cut(s) 143, 244, 259, 319, 397, 563, 952
Hpy188III TCNNGA 6 cut(s) 278, 304, 448, 514, 625, 793
Hpy8I GTNNAC 2 cut(s) 517, 700
Hpy99I CGWCG 5 cut(s) 86, 529, 605, 823, 904
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 3 cut(s) 13, 697, 900
HpyCH4IV ACGT 5 cut(s) 131, 519, 639, 690, 745
HpyCH4V TGCA 2 cut(s) 646, 885
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 45, 51, 152, 221, 579
HpyF3I CTNAG 4 cut(s) 147, 225, 284, 807
HpySE526I ACGT 5 cut(s) 131, 519, 639, 690, 745
Hsp92I GRCGYC 2 cut(s) 39, 84
Hsp92II CATG 3 cut(s) 274, 828, 961
HspAI GCGC 3 cut(s) 39, 172, 377
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 6 cut(s) 94, 138, 261, 280, 558, 988
LmnI GCTCC 6 cut(s) 35, 143, 260, 293, 306, 1006
Lsp1109I GCAGC 3 cut(s) 324, 472, 916
MaeI CTAG 3 cut(s) 492, 813, 846
MaeII ACGT 5 cut(s) 131, 519, 639, 690, 745
MaeIII GTNAC 2 cut(s) 76, 691
MalI GATC 6 cut(s) 96, 140, 263, 282, 560, 990
MboI GATC 6 cut(s) 94, 138, 261, 280, 558, 988
MboII GAAGA 2 cut(s) 410, 916
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 2 cut(s) 387, 1011
MluCI AATT 1 cut(s) 427
MluI ACGCGT 1 cut(s) 608
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 3 cut(s) 335, 663, 832
MroXI GAANNNNTTC 1 cut(s) 238
MseI TTAA 2 cut(s) 723, 920
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 45, 1003
MspCI CTTAAG 1 cut(s) 919
MspI CCGG 7 cut(s) 36, 194, 252, 334, 366, 549, 713
MspR9I CCNGG 4 cut(s) 36, 194, 252, 714
MvnI CGCG 4 cut(s) 174, 377, 389, 610
MwoI GCNNNNNNNGC 6 cut(s) 36, 45, 51, 152, 221, 579
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 4 cut(s) 36, 194, 252, 714
NdeII GATC 6 cut(s) 94, 138, 261, 280, 558, 988
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 3 cut(s) 274, 828, 961
NlaIV GGNNCC 5 cut(s) 31, 40, 178, 256, 990
NmeAIII GCCGAG 2 cut(s) 94, 241
NmuCI GTSAC 2 cut(s) 76, 691
NspI RCATGY 1 cut(s) 828
PaeR7I CTCGAG 1 cut(s) 156
PciI ACATGT 1 cut(s) 824
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 393
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 4 cut(s) 234, 405, 510, 971
Pfl23II CGTACG 1 cut(s) 615
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 1003
PkrI GCNGC 7 cut(s) 47, 214, 339, 487, 490, 497, 931
PleI GAGTC 3 cut(s) 334, 663, 832
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 3 cut(s) 334, 663, 832
PscI ACATGT 1 cut(s) 824
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 5 cut(s) 31, 40, 178, 256, 990
PspPI GGNCC 3 cut(s) 177, 187, 942
PspXI VCTCGAGB 1 cut(s) 156
PsuI RGATCY 1 cut(s) 988
PsyI GACNNNGTC 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 6 cut(s) 20, 64, 599, 617, 708, 872
RsaNI GTAC 6 cut(s) 19, 63, 598, 616, 707, 871
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 723, 920
SatI GCNGC 7 cut(s) 46, 213, 338, 486, 489, 496, 930
Sau3AI GATC 6 cut(s) 94, 138, 261, 280, 558, 988
Sau96I GGNCC 3 cut(s) 177, 187, 942
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 3 cut(s) 335, 663, 832
ScrFI CCNGG 4 cut(s) 36, 194, 252, 714
SduI GDGCHC 2 cut(s) 387, 1011
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 2 cut(s) 187, 942
SlaI CTCGAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 156, 671, 919
SmoI CTYRAG 3 cut(s) 156, 671, 919
Sse9I AATT 1 cut(s) 427
SsiI CCGC 9 cut(s) 45, 100, 111, 174, 213, 488, 495, 730, 945
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 3 cut(s) 492, 813, 846
StyD4I CCNGG 4 cut(s) 34, 192, 250, 712
StyI CCWWGG 3 cut(s) 651, 845, 966
TaaI ACNGT 3 cut(s) 13, 697, 900
TaiI ACGT 5 cut(s) 134, 522, 642, 693, 748
TaqII GACCGA 1 cut(s) 425
TasI AATT 1 cut(s) 427
TatI WGTACW 2 cut(s) 62, 870
TauI GCSGC 4 cut(s) 48, 215, 491, 498
TfiI GAWTC 4 cut(s) 234, 405, 510, 971
Tru1I TTAA 2 cut(s) 723, 920
Tru9I TTAA 2 cut(s) 723, 920
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 2 cut(s) 76, 691
TseI GCWGC 3 cut(s) 337, 485, 929
Tsp45I GTSAC 2 cut(s) 76, 691
TspGWI ACGGA 3 cut(s) 289, 417, 695
TspRI CASTG 1 cut(s) 982
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 1003
Vha464I CTTAAG 1 cut(s) 919
VpaK11BI GGWCC 2 cut(s) 187, 942
XceI RCATGY 1 cut(s) 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XhoI CTCGAG 1 cut(s) 156
XmaJI CCTAGG 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 3 cut(s) 492, 813, 846
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.