Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0009222

Physical Location & Seq

Genomic Coordinates Reverse (-)

181537 .. 183275

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgctcgaaaccgtgaagtacctgatcggctccgtcggcaccagcggttacggctccaagagcaccgcggagcaagtcaccgacagctaccctgatctccgctccatcaccgccatcatcacaggtgctacgtcggggatcggagcagagactgcgcgagtgttagcgaagcgcggcgccaagctagtcctccccgctcggagccttaaagccgccgaggacgccaaggcgagaatcctctccgagtttccggactcggagatcattgtcatggcgcttgatctcagctcccttgcttccgttagaaacttcgtgtcggagttcgagtccctccacctacctcttaatctcctcataaacaacgccggtaagttcgcgcacgagcatgcgatttccgaagacggaatagaaatgacttttgctactaattatctgggtcattttctgttgacgaagctgctgctgaacaagatgatccaaacagcgaaggccaccggcgtccaagggcgaatcgtgaacgtgtcgtctgctattcacggctggttttccggcgatacaatccgatacctcggcgagataagccggagcagaagcagccaatacgacgagacacgtgcgtatgcgctctcgaagctcgccaacgttttgcacacgaaggaactcggtcgcaggctcagggaaatggaggccaacgtgactgtgaactgtgtgcatccggggattgttaggacccgactcaccagagaacgtgaaggccttgctactgatatggtgttcctctttgcttccaagctcttgaaaacaatacctcaggctgcagccacgacatgttacgttgcgactcatccacggctgatcggtgtgtccgggaagtattttgcggattgcaacgagacatcgccgtcaaaattggggtctaatttggtggaagctagtcggttatggtctgcttctgaagtcatggtgtccaaagattccggtgctatttttgcagatcaattgaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

336

Amino Acids

36.46

Weight (kDa)

8.85

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64590 AT4G24050 AT4G24050
fragaria_vesca	FvH4_5g11450 FvH4_5g11450 FvH4_5g11450
malus_domestica	MD06G1113700.v1.1 MD14G1134700.v1.1
prunus_persica	Prupe.5G126400_v2.0.a1 Prupe.5G126400_v2.0.a1
pyrus_communis	pycom06g10620
rosa_chinensis	RchiOBHm_Chr7g0186391
rosa_laevigata	RLG00000004847
rosa_multiflora	Rmu_sc0000645.1_g000045
rosa_roxburghii	Rroxscaffold_3G00268170
rosa_rugosa	Rorug06G0473800 Rorug06G0473900
rosa_samantha	Rh7AG067500 Rh7CG080500 Rh7DG081100
rosa_wichuraiana	Rw7G006760 Rw7G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	901
AccB1I	GGYRCC	2 cut(s)	38, 176
AccBSI	CCGCTC	2 cut(s)	102, 197
AccII	CGCG	4 cut(s)	68, 157, 174, 377
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	9 cut(s)	45, 66, 68, 100, 111, 174, 195, 213, 881
AclI	AACGTT	1 cut(s)	642
AclWI	GGATC	2 cut(s)	146, 469
AcuI	CTGAAG	1 cut(s)	975
AcvI	CACGTG	1 cut(s)	614
AcyI	GRCGYC	3 cut(s)	177, 222, 498
AfaI	GTAC	1 cut(s)	20
AflIII	ACRYGT	3 cut(s)	519, 611, 827
AgsI	TTSAA	2 cut(s)	799, 1003
AluBI	AGCT	7 cut(s)	87, 184, 288, 457, 634, 793, 932
AluI	AGCT	7 cut(s)	87, 184, 288, 457, 634, 793, 932
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	3 cut(s)	143, 602, 887
AlwI	GGATC	2 cut(s)	146, 469
AlwNI	CAGNNNCTG	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	3 cut(s)	489, 687, 754
ApeKI	GCWGC	5 cut(s)	457, 460, 594, 815, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	899, 931
AspLEI	GCGC	6 cut(s)	157, 174, 179, 277, 379, 625
AspS9I	GGNCC	1 cut(s)	729
AsuC2I	CCSGG	2 cut(s)	717, 868
AsuHPI	GGTGA	3 cut(s)	70, 100, 730
AvaII	GGWCC	1 cut(s)	729
AxyI	CCTNAGG	1 cut(s)	810
BanI	GGYRCC	2 cut(s)	38, 176
BauI	CACGAG	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	5 cut(s)	444, 447, 606, 802, 830
BccI	CCATC	2 cut(s)	113, 122
BceAI	ACGGC	4 cut(s)	67, 553, 866, 886
BcgI	CGANNNNNNTGC	4 cut(s)	442, 476, 596, 630
BcnI	CCSGG	2 cut(s)	717, 868
BcoDI	GTCTC	3 cut(s)	143, 602, 887
BfaI	CTAG	3 cut(s)	185, 933, 1009
BfmI	CTRYAG	1 cut(s)	816
BfoI	RGCGCY	2 cut(s)	180, 278
BisI	GCNGC	7 cut(s)	175, 213, 458, 461, 595, 816, 819
BlsI	GCNGC	7 cut(s)	176, 214, 459, 462, 596, 817, 820
Bme1390I	CCNGG	2 cut(s)	717, 868
Bme18I	GGWCC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	729
BmiI	GGNNCC	6 cut(s)	31, 40, 55, 178, 203, 731
BmrFI	CCNGG	2 cut(s)	717, 868
BmsI	GCATC	1 cut(s)	721
BpiI	GAAGAC	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	674
BpuMI	CCSGG	2 cut(s)	717, 868
BsaAI	YACGTR	1 cut(s)	614
BsaHI	GRCGYC	3 cut(s)	177, 222, 498
BsaJI	CCNNGG	7 cut(s)	66, 216, 225, 502, 568, 716, 848
BsaWI	WCCGGW	2 cut(s)	250, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bse118I	RCCGGY	2 cut(s)	365, 494
Bse21I	CCTNAGG	1 cut(s)	810
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	7 cut(s)	66, 216, 225, 502, 568, 716, 848
BseGI	GGATG	2 cut(s)	712, 844
BseMII	CTCAG	3 cut(s)	298, 688, 824
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	5 cut(s)	444, 447, 606, 802, 830
Bsh1236I	CGCG	4 cut(s)	68, 157, 174, 377
Bsh1285I	CGRYCG	1 cut(s)	667
BshFI	GGCC	3 cut(s)	491, 689, 756
BshNI	GGYRCC	2 cut(s)	38, 176
BsiEI	CGRYCG	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
BslFI	GGGAC	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	143, 602, 887
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	491, 689, 756
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
BspACI	CCGC	9 cut(s)	45, 66, 68, 100, 111, 174, 195, 213, 881
BspANI	GGCC	3 cut(s)	491, 689, 756
BspCNI	CTCAG	3 cut(s)	297, 687, 823
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	4 cut(s)	68, 157, 174, 377
BspLI	GGNNCC	6 cut(s)	31, 40, 55, 178, 203, 731
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	2 cut(s)	146, 469
BspT107I	GGYRCC	2 cut(s)	38, 176
BsrBI	CCGCTC	2 cut(s)	102, 197
BsrFI	RCCGGY	2 cut(s)	365, 494
BssAI	RCCGGY	2 cut(s)	365, 494
BssECI	CCNNGG	7 cut(s)	66, 216, 225, 502, 568, 716, 848
BssMI	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
BssNI	GRCGYC	3 cut(s)	177, 222, 498
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	225, 502
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	13, 700, 707
BstACI	GRCGYC	3 cut(s)	177, 222, 498
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	3 cut(s)	387, 636, 671
BstDEI	CTNAG	3 cut(s)	284, 674, 810
BstDSI	CCRYGG	2 cut(s)	66, 848
BstF5I	GGATG	2 cut(s)	712, 844
BstFNI	CGCG	4 cut(s)	68, 157, 174, 377
BstH2I	RGCGCY	2 cut(s)	180, 278
BstHHI	GCGC	6 cut(s)	157, 174, 179, 277, 379, 625
BstKTI	GATC	8 cut(s)	27, 97, 141, 264, 283, 477, 858, 997
BstMAI	GTCTC	3 cut(s)	143, 602, 887
BstMBI	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
BstMCI	CGRYCG	1 cut(s)	667
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 51, 60, 152, 221, 579, 594, 631, 989
BstNSI	RCATGY	2 cut(s)	389, 831
BstSCI	CCNGG	2 cut(s)	715, 866
BstSFI	CTRYAG	1 cut(s)	816
BstUI	CGCG	4 cut(s)	68, 157, 174, 377
BstV1I	GCAGC	5 cut(s)	444, 447, 606, 802, 830
BstV2I	GAAGAC	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	491, 689, 756
BtgI	CCRYGG	2 cut(s)	66, 848
BtgZI	GCGATG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	712, 844
Cac8I	GCNNGC	3 cut(s)	387, 636, 671
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	6 cut(s)	157, 174, 179, 277, 379, 625
Cfr10I	RCCGGY	2 cut(s)	365, 494
Cfr13I	GGNCC	1 cut(s)	729
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	2 cut(s)	230, 487
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	271, 386, 828, 961
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	284, 674, 810
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	8 cut(s)	26, 96, 140, 263, 282, 476, 857, 996
DpnII	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
DrdI	GACNNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	225, 502
Eco147I	AGGCCT	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	975
Eco72I	CACGTG	1 cut(s)	614
Eco81I	CCTNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	225, 502
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	225, 502
FaeI	CATG	4 cut(s)	274, 389, 831, 964
FaiI	YATR	8 cut(s)	272, 356, 387, 621, 770, 829, 943, 962
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	270, 385, 827, 960
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	7 cut(s)	175, 213, 458, 461, 595, 816, 819
FokI	GGATG	2 cut(s)	699, 831
Fsp4HI	GCNGC	7 cut(s)	175, 213, 458, 461, 595, 816, 819
FspBI	CTAG	3 cut(s)	185, 933, 1009
GlaI	GCGC	6 cut(s)	156, 173, 178, 276, 378, 624
GluI	GCNGC	7 cut(s)	175, 213, 458, 461, 595, 816, 819
HaeII	RGCGCY	2 cut(s)	180, 278
HaeIII	GGCC	3 cut(s)	491, 689, 756
HapII	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
HgaI	GACGC	2 cut(s)	230, 487
HhaI	GCGC	6 cut(s)	157, 174, 179, 277, 379, 625
Hin1I	GRCGYC	3 cut(s)	177, 222, 498
Hin1II	CATG	4 cut(s)	274, 389, 831, 964
Hin6I	GCGC	6 cut(s)	155, 172, 177, 275, 377, 623
HinP1I	GCGC	6 cut(s)	155, 172, 177, 275, 377, 623
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	7 cut(s)	234, 254, 326, 510, 735, 841, 974
HpaII	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
HphI	GGTGA	3 cut(s)	70, 100, 730
Hpy166II	GTNNAC	3 cut(s)	450, 517, 703
Hpy188I	TCNGA	8 cut(s)	143, 201, 244, 259, 319, 397, 563, 955
Hpy188III	TCNNGA	4 cut(s)	251, 514, 628, 796
Hpy8I	GTNNAC	3 cut(s)	450, 517, 703
Hpy99I	CGWCG	3 cut(s)	38, 136, 608
HpyAV	CCTTC	4 cut(s)	481, 649, 746, 997
HpyCH4III	ACNGT	3 cut(s)	13, 700, 707
HpyCH4IV	ACGT	7 cut(s)	131, 519, 613, 642, 693, 748, 834
HpyCH4V	TGCA	5 cut(s)	649, 712, 818, 888, 992
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 51, 60, 152, 221, 579, 594, 631, 989
HpyF3I	CTNAG	3 cut(s)	284, 674, 810
HpySE526I	ACGT	7 cut(s)	131, 519, 613, 642, 693, 748, 834
Hsp92I	GRCGYC	3 cut(s)	177, 222, 498
Hsp92II	CATG	4 cut(s)	274, 389, 831, 964
HspAI	GCGC	6 cut(s)	155, 172, 177, 275, 377, 623
KasI	GGCGCC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
LmnI	GCTCC	8 cut(s)	35, 59, 70, 107, 143, 201, 293, 585
Lsp1109I	GCAGC	5 cut(s)	444, 447, 606, 802, 830
LweI	GCATC	1 cut(s)	721
MaeI	CTAG	3 cut(s)	185, 933, 1009
MaeII	ACGT	7 cut(s)	131, 519, 613, 642, 693, 748, 834
MaeIII	GTNAC	4 cut(s)	47, 76, 694, 830
MalI	GATC	8 cut(s)	26, 96, 140, 263, 282, 476, 857, 996
MbiI	CCGCTC	2 cut(s)	102, 197
MboI	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
MboII	GAAGA	1 cut(s)	410
MfeI	CAATTG	1 cut(s)	998
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	427, 908, 919, 998
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	4 cut(s)	248, 335, 729, 835
MmeI	TCCRAC	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	2 cut(s)	207, 345
MslI	CAYNNNNRTG	2 cut(s)	269, 384
MspA1I	CMGCKG	2 cut(s)	45, 68
MspI	CCGG	8 cut(s)	251, 366, 495, 549, 583, 716, 867, 978
MspR9I	CCNGG	2 cut(s)	717, 868
MteI	GCGCNGCGC	1 cut(s)	175
MunI	CAATTG	1 cut(s)	998
MvnI	CGCG	4 cut(s)	68, 157, 174, 377
MwoI	GCNNNNNNNGC	9 cut(s)	36, 51, 60, 152, 221, 579, 594, 631, 989
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	2 cut(s)	717, 868
NdeII	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
NlaIII	CATG	4 cut(s)	274, 389, 831, 964
NlaIV	GGNNCC	6 cut(s)	31, 40, 55, 178, 203, 731
NmeAIII	GCCGAG	2 cut(s)	241, 549
NmuCI	GTSAC	2 cut(s)	76, 694
NspI	RCATGY	2 cut(s)	389, 831
PaeI	GCATGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	756
PciI	ACATGT	1 cut(s)	827
PfeI	GAWTC	3 cut(s)	234, 510, 974
PfoI	TCCNGGA	1 cut(s)	866
PkrI	GCNGC	7 cut(s)	176, 214, 459, 462, 596, 817, 820
PleI	GAGTC	4 cut(s)	248, 334, 729, 835
PluTI	GGCGCC	1 cut(s)	180
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
PpsI	GAGTC	4 cut(s)	248, 334, 729, 835
Ppu21I	YACGTR	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	729
PscI	ACATGT	1 cut(s)	827
Psp1406I	AACGTT	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	729
PspCI	CACGTG	1 cut(s)	614
PspN4I	GGNNCC	6 cut(s)	31, 40, 55, 178, 203, 731
PspPI	GGNCC	1 cut(s)	729
PspPPI	RGGWCCY	1 cut(s)	729
PstI	CTGCAG	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	269, 384
SacII	CCGCGG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	207, 345
SatI	GCNGC	7 cut(s)	175, 213, 458, 461, 595, 816, 819
Sau3AI	GATC	8 cut(s)	24, 94, 138, 261, 280, 474, 855, 994
Sau96I	GGNCC	1 cut(s)	729
SchI	GAGTC	4 cut(s)	248, 335, 729, 835
ScrFI	CCNGG	2 cut(s)	717, 868
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	721
SfcI	CTRYAG	1 cut(s)	816
SfoI	GGCGCC	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	69
SgrAI	CRCCGGYG	1 cut(s)	494
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	2 cut(s)	269, 384
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	4 cut(s)	427, 908, 919, 998
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	9 cut(s)	45, 66, 68, 100, 111, 174, 195, 213, 881
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	185, 933, 1009
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	2 cut(s)	715, 866
StyI	CCWWGG	2 cut(s)	225, 502
TaaI	ACNGT	3 cut(s)	13, 700, 707
TaiI	ACGT	7 cut(s)	134, 522, 616, 645, 696, 751, 837
TaqI	TCGA	3 cut(s)	6, 324, 629
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	4 cut(s)	427, 908, 919, 998
TauI	GCSGC	2 cut(s)	177, 215
TfiI	GAWTC	3 cut(s)	234, 510, 974
Tru1I	TTAA	2 cut(s)	207, 345
Tru9I	TTAA	2 cut(s)	207, 345
TseFI	GTSAC	2 cut(s)	76, 694
TseI	GCWGC	5 cut(s)	457, 460, 594, 815, 818
Tsp45I	GTSAC	2 cut(s)	76, 694
TspGWI	ACGGA	3 cut(s)	22, 289, 417
VpaK11BI	GGWCC	1 cut(s)	729
XceI	RCATGY	2 cut(s)	389, 831
XspI	CTAG	3 cut(s)	185, 933, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.