Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009222

Physical Location & Seq

Genomic Coordinates Forward (+)

21335839 .. 21338353

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1134700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCTCGACACTTTCAAGTACCTGATCGGCTCACCCGGTGCCAGCGGCTACGGTTCAAAGAGCACAGCCGAGCAAGTCACTGACGCGTCCGCCGATCTCCACCAGATCACCGCCATCATCACAGGTGCCACGTCAGGGATCGGAGCTGAGACGGCCCAAGTTTTAGCCAAGCGCGGGGCAAAGCTTGTCCTCCCGGCTCGAAGCCTCAAAGCTGCCGAGGATGCCAAGGCTCGAATCGTCTCCGAGTTTCCGGGCTCGAAGATCATCGTCATGGCGCTCGATCTCAGCTCCCTCGCCTCTGTTAGGAGCTTCGTCTCCGATTTCGAGTCCCTCCGGCTGCCTCTTAATCTCCTTATAAACAACGCCGGAAAGTTTGCGCACGGGCATGCGATTTCCGAAGACGGAATCGAAATGACCTTTGCTACTAATTATCTCGGTCATTTTCTGTTGACGAAGCTGTTGCTCAACAAAATGATCGAAACAGCGGGGGTTAGCGGCGTTCAAGGGCGAATTGTGAACGTGTCGTCGTCTATTCACGGCTGGTTTTCCGGCGATATAATCCGATATCTTGGCAAGATAAGCCGAAGCAGAAGCCAGTACGACGAGACACGTGCGTACGCGCTCTCGAAGCTCGCCAACGTCTTGCACACCAAGGAACTTGCTCGCAGACTCAAGGAAATGGAGGCCAACGTGACCGTTAACTGCGTGCATCCGGGTATCGTTAAAACCCGCCTCACCCGAGAACGTGAAGGTCTTGCCACAGATTTGGTGTTCCTCTTTGCTTCAAAGCTCTTGAAAACAATCCCTCAGGCTGCTGCGACGACATGTTATGTTGCTACTCATCCTAGGCTGTTGGGCGTGTCTGGGAGGTACTTTGCTGATTGCAACGAGACATCACCGTCGAAGATGGGGTCGAACTTAAGCGAAGCTGCTCGATTATGGTCCGCCTCTGAAATCATGGTGTCCAAGAATTCCAATGCTATCTTTGATCCAAGCCACCACTTGGAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

338

Amino Acids

36.33

Weight (kDa)

9.18

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 249	1e-32	short chain dehydrogenase
KR	PF08659	37 - 142	1.2e-09	KR domain
adh_short_C2	PF13561	42 - 251	4.8e-19	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64590 AT4G24050 AT4G24050
fragaria_vesca	FvH4_5g11450 FvH4_5g11450 FvH4_5g11450
malus_domestica	MD06G1113700.v1.1 MD14G1134700.v1.1
prunus_persica	Prupe.5G126400_v2.0.a1 Prupe.5G126400_v2.0.a1
pyrus_communis	pycom06g10620
rosa_chinensis	RchiOBHm_Chr7g0186391
rosa_laevigata	RLG00000004847
rosa_multiflora	Rmu_sc0000645.1_g000045
rosa_roxburghii	Rroxscaffold_3G00268170
rosa_rugosa	Rorug06G0473800 Rorug06G0473900
rosa_samantha	Rh7AG067500 Rh7CG080500 Rh7DG081100
rosa_wichuraiana	Rw7G006760 Rw7G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AasI	GACNNNNNNGTC	1 cut(s)	898
Acc16I	TGCGCA	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	38, 125
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AccII	CGCG	3 cut(s)	86, 174, 620
AciI	CCGC	8 cut(s)	45, 90, 111, 174, 485, 495, 730, 945
AclWI	GGATC	2 cut(s)	146, 983
AcsI	RAATTY	1 cut(s)	970
AcvI	CACGTG	1 cut(s)	611
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	4 cut(s)	20, 599, 617, 872
AfiI	CCNNNNNNNGG	4 cut(s)	135, 174, 303, 1003
AflII	CTTAAG	1 cut(s)	919
AflIII	ACRYGT	4 cut(s)	84, 519, 608, 824
AgsI	TTSAA	5 cut(s)	16, 57, 503, 786, 796
AjiI	CACGTC	1 cut(s)	132
AluBI	AGCT	9 cut(s)	146, 184, 212, 288, 309, 457, 631, 790, 929
AluI	AGCT	9 cut(s)	146, 184, 212, 288, 309, 457, 631, 790, 929
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	5 cut(s)	143, 244, 319, 599, 884
AlwI	GGATC	2 cut(s)	146, 983
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	2 cut(s)	153, 684
ApeKI	GCWGC	5 cut(s)	212, 337, 812, 815, 929
ApoI	RAATTY	1 cut(s)	970
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspA2I	CCTAGG	1 cut(s)	845
AspLEI	GCGC	4 cut(s)	174, 277, 379, 622
AspS9I	GGNCC	2 cut(s)	154, 942
AsuC2I	CCSGG	4 cut(s)	36, 194, 252, 714
AsuHPI	GGTGA	4 cut(s)	24, 100, 727, 888
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	942
AvrII	CCTAGG	1 cut(s)	845
AxyI	CCTNAGG	1 cut(s)	807
BanI	GGYRCC	2 cut(s)	38, 125
BanII	GRGCYC	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	5 cut(s)	199, 324, 799, 802, 916
BccI	CCATC	2 cut(s)	122, 901
BceAI	ACGGC	2 cut(s)	168, 553
BcgI	CGANNNNNNTGC	4 cut(s)	442, 476, 593, 627
BcnI	CCSGG	4 cut(s)	36, 194, 252, 714
BcoDI	GTCTC	5 cut(s)	143, 244, 319, 599, 884
BfaI	CTAG	1 cut(s)	846
BfoI	RGCGCY	1 cut(s)	278
BfrI	CTTAAG	1 cut(s)	919
BisI	GCNGC	7 cut(s)	46, 213, 338, 496, 813, 816, 930
BlnI	CCTAGG	1 cut(s)	845
BlsI	GCNGC	7 cut(s)	47, 214, 339, 497, 814, 817, 931
Bme1390I	CCNGG	4 cut(s)	36, 194, 252, 714
Bme18I	GGWCC	1 cut(s)	942
BmeT110I	CYCGRG	1 cut(s)	738
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	154, 942
BmiI	GGNNCC	2 cut(s)	40, 127
BmrFI	CCNGG	4 cut(s)	36, 194, 252, 714
BmsI	GCATC	2 cut(s)	211, 718
BpiI	GAAGAC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	4 cut(s)	36, 194, 252, 714
BsaAI	YACGTR	1 cut(s)	611
BsaJI	CCNNGG	4 cut(s)	216, 225, 651, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 174, 303, 1003
Bse1I	ACTGG	1 cut(s)	595
Bse21I	CCTNAGG	1 cut(s)	807
BseDI	CCNNGG	4 cut(s)	216, 225, 651, 845
BseGI	GGATG	3 cut(s)	226, 709, 841
BseLI	CCNNNNNNNGG	4 cut(s)	135, 174, 303, 1003
BseMII	CTCAG	3 cut(s)	138, 298, 821
BseNI	ACTGG	1 cut(s)	595
BseXI	GCAGC	5 cut(s)	199, 324, 799, 802, 916
Bsh1236I	CGCG	3 cut(s)	86, 174, 620
BshFI	GGCC	2 cut(s)	155, 686
BshNI	GGYRCC	2 cut(s)	38, 125
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	7 cut(s)	36, 194, 251, 334, 366, 549, 713
BsiWI	CGTACG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	4 cut(s)	135, 174, 303, 1003
BsmAI	GTCTC	5 cut(s)	143, 244, 319, 599, 884
BsmBI	CGTCTC	3 cut(s)	143, 244, 319
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	155, 686
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	65, 257
Bsp143I	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
BspACI	CCGC	8 cut(s)	45, 90, 111, 174, 485, 495, 730, 945
BspANI	GGCC	2 cut(s)	155, 686
BspCNI	CTCAG	3 cut(s)	139, 297, 820
BspFNI	CGCG	3 cut(s)	86, 174, 620
BspLI	GGNNCC	2 cut(s)	40, 127
BspPI	GGATC	2 cut(s)	146, 983
BspT107I	GGYRCC	2 cut(s)	38, 125
BspTI	CTTAAG	1 cut(s)	919
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	216, 225, 651, 845
BssMI	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
BssT1I	CCWWGG	3 cut(s)	225, 651, 845
Bst4CI	ACNGT	3 cut(s)	53, 697, 900
BstAFI	CTTAAG	1 cut(s)	919
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	5 cut(s)	43, 387, 633, 664, 707
BstDEI	CTNAG	3 cut(s)	147, 284, 807
BstENI	CCTNNNNNAGG	1 cut(s)	301
BstF5I	GGATG	3 cut(s)	226, 709, 841
BstFNI	CGCG	3 cut(s)	86, 174, 620
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	4 cut(s)	174, 277, 379, 622
BstKTI	GATC	8 cut(s)	27, 97, 108, 141, 264, 283, 477, 991
BstMAI	GTCTC	5 cut(s)	143, 244, 319, 599, 884
BstMBI	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 221, 579, 628
BstNSI	RCATGY	2 cut(s)	389, 828
BstSCI	CCNGG	4 cut(s)	34, 192, 250, 712
BstUI	CGCG	3 cut(s)	86, 174, 620
BstV1I	GCAGC	5 cut(s)	199, 324, 799, 802, 916
BstV2I	GAAGAC	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	766
Bsu36I	CCTNAGG	1 cut(s)	807
BsuRI	GGCC	2 cut(s)	155, 686
BtrI	CACGTC	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	226, 709, 841
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	5 cut(s)	43, 387, 633, 664, 707
CfoI	GCGC	4 cut(s)	174, 277, 379, 622
Cfr13I	GGNCC	2 cut(s)	154, 942
CseI	GACGC	2 cut(s)	75, 92
Csp6I	GTAC	4 cut(s)	19, 598, 616, 871
CviAII	CATG	4 cut(s)	271, 386, 825, 958
CviQI	GTAC	4 cut(s)	19, 598, 616, 871
DdeI	CTNAG	3 cut(s)	147, 284, 807
DpnI	GATC	8 cut(s)	26, 96, 107, 140, 263, 282, 476, 990
DpnII	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
DraIII	CACNNNGTG	1 cut(s)	38
DrdI	GACNNNNNNGTC	1 cut(s)	898
DseDI	GACNNNNNNGTC	1 cut(s)	898
EciI	GGCGGA	2 cut(s)	79, 934
Eco130I	CCWWGG	3 cut(s)	225, 651, 845
Eco24I	GRGCYC	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	942
Eco72I	CACGTG	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	738
EcoNI	CCTNNNNNAGG	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	970
EcoRV	GATATC	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	225, 651, 845
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	3 cut(s)	225, 651, 845
Esp3I	CGTCTC	3 cut(s)	143, 244, 319
FaeI	CATG	4 cut(s)	274, 389, 828, 961
FaiI	YATR	8 cut(s)	272, 356, 387, 557, 826, 831, 940, 959
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	270, 385, 824, 957
FauI	CCCGC	3 cut(s)	167, 478, 737
Fnu4HI	GCNGC	7 cut(s)	46, 213, 338, 496, 813, 816, 930
FokI	GGATG	3 cut(s)	233, 696, 828
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	7 cut(s)	46, 213, 338, 496, 813, 816, 930
FspBI	CTAG	1 cut(s)	846
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	4 cut(s)	173, 276, 378, 621
GluI	GCNGC	7 cut(s)	46, 213, 338, 496, 813, 816, 930
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	155, 686
HapII	CCGG	7 cut(s)	36, 194, 251, 334, 366, 549, 713
HgaI	GACGC	2 cut(s)	75, 92
HhaI	GCGC	4 cut(s)	174, 277, 379, 622
Hin1II	CATG	4 cut(s)	274, 389, 828, 961
Hin6I	GCGC	4 cut(s)	172, 275, 377, 620
HinP1I	GCGC	4 cut(s)	172, 275, 377, 620
HincII	GTYRAC	2 cut(s)	450, 700
HindII	GTYRAC	2 cut(s)	450, 700
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	4 cut(s)	234, 326, 405, 669
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	7 cut(s)	36, 194, 251, 334, 366, 549, 713
HphI	GGTGA	4 cut(s)	24, 100, 727, 888
Hpy166II	GTNNAC	3 cut(s)	450, 517, 700
Hpy188I	TCNGA	6 cut(s)	143, 244, 319, 397, 563, 952
Hpy188III	TCNNGA	2 cut(s)	625, 793
Hpy8I	GTNNAC	3 cut(s)	450, 517, 700
Hpy99I	CGWCG	4 cut(s)	529, 605, 823, 904
HpyAV	CCTTC	1 cut(s)	743
HpyCH4III	ACNGT	3 cut(s)	53, 697, 900
HpyCH4IV	ACGT	6 cut(s)	131, 519, 610, 639, 690, 745
HpyCH4V	TGCA	3 cut(s)	646, 709, 885
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 221, 579, 628
HpyF3I	CTNAG	3 cut(s)	147, 284, 807
HpySE526I	ACGT	6 cut(s)	131, 519, 610, 639, 690, 745
Hsp92II	CATG	4 cut(s)	274, 389, 828, 961
HspAI	GCGC	4 cut(s)	172, 275, 377, 620
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
LmnI	GCTCC	3 cut(s)	143, 293, 306
Lsp1109I	GCAGC	5 cut(s)	199, 324, 799, 802, 916
LweI	GCATC	2 cut(s)	211, 718
MaeI	CTAG	1 cut(s)	846
MaeII	ACGT	6 cut(s)	131, 519, 610, 639, 690, 745
MaeIII	GTNAC	2 cut(s)	76, 691
MalI	GATC	8 cut(s)	26, 96, 107, 140, 263, 282, 476, 990
MboI	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
MboII	GAAGA	3 cut(s)	271, 410, 916
MhlI	GDGCHC	2 cut(s)	65, 257
MluCI	AATT	3 cut(s)	427, 510, 970
MluI	ACGCGT	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	335, 663
MseI	TTAA	4 cut(s)	345, 699, 723, 920
MslI	CAYNNNNRTG	2 cut(s)	269, 384
MspA1I	CMGCKG	2 cut(s)	45, 485
MspCI	CTTAAG	1 cut(s)	919
MspI	CCGG	7 cut(s)	36, 194, 251, 334, 366, 549, 713
MspR9I	CCNGG	4 cut(s)	36, 194, 252, 714
MvnI	CGCG	3 cut(s)	86, 174, 620
MwoI	GCNNNNNNNGC	4 cut(s)	152, 221, 579, 628
NciI	CCSGG	4 cut(s)	36, 194, 252, 714
NdeII	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
NlaIII	CATG	4 cut(s)	274, 389, 828, 961
NlaIV	GGNNCC	2 cut(s)	40, 127
NmeAIII	GCCGAG	2 cut(s)	94, 241
NmuCI	GTSAC	2 cut(s)	76, 691
NsbI	TGCGCA	1 cut(s)	378
NspI	RCATGY	2 cut(s)	389, 828
PaeI	GCATGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	234, 405
Pfl23II	CGTACG	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	1003
PkrI	GCNGC	7 cut(s)	47, 214, 339, 497, 814, 817, 931
PleI	GAGTC	2 cut(s)	334, 663
PmaCI	CACGTG	1 cut(s)	611
PmlI	CACGTG	1 cut(s)	611
PpsI	GAGTC	2 cut(s)	334, 663
Ppu21I	YACGTR	1 cut(s)	611
PscI	ACATGT	1 cut(s)	824
PsiI	TTATAA	1 cut(s)	356
PspCI	CACGTG	1 cut(s)	611
PspLI	CGTACG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	40, 127
PspPI	GGNCC	2 cut(s)	154, 942
RsaI	GTAC	4 cut(s)	20, 599, 617, 872
RsaNI	GTAC	4 cut(s)	19, 598, 616, 871
RseI	CAYNNNNRTG	2 cut(s)	269, 384
SaqAI	TTAA	4 cut(s)	345, 699, 723, 920
SatI	GCNGC	7 cut(s)	46, 213, 338, 496, 813, 816, 930
Sau3AI	GATC	8 cut(s)	24, 94, 105, 138, 261, 280, 474, 988
Sau96I	GGNCC	2 cut(s)	154, 942
SchI	GAGTC	2 cut(s)	335, 663
ScrFI	CCNGG	4 cut(s)	36, 194, 252, 714
SduI	GDGCHC	2 cut(s)	65, 257
SfaNI	GCATC	2 cut(s)	211, 718
SinI	GGWCC	1 cut(s)	942
SmiMI	CAYNNNNRTG	2 cut(s)	269, 384
SmlI	CTYRAG	2 cut(s)	671, 919
SmoI	CTYRAG	2 cut(s)	671, 919
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	427, 510, 970
SsiI	CCGC	8 cut(s)	45, 90, 111, 174, 485, 495, 730, 945
SspMI	CTAG	1 cut(s)	846
StyD4I	CCNGG	4 cut(s)	34, 192, 250, 712
StyI	CCWWGG	3 cut(s)	225, 651, 845
TaaI	ACNGT	3 cut(s)	53, 697, 900
TaiI	ACGT	6 cut(s)	134, 522, 613, 642, 693, 748
TaqII	GACCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	427, 510, 970
TauI	GCSGC	2 cut(s)	48, 498
TfiI	GAWTC	2 cut(s)	234, 405
Tru1I	TTAA	4 cut(s)	345, 699, 723, 920
Tru9I	TTAA	4 cut(s)	345, 699, 723, 920
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	76, 691
TseI	GCWGC	5 cut(s)	212, 337, 812, 815, 929
Tsp45I	GTSAC	2 cut(s)	76, 691
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	1003
Vha464I	CTTAAG	1 cut(s)	919
VpaK11BI	GGWCC	1 cut(s)	942
XagI	CCTNNNNNAGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	970
XceI	RCATGY	2 cut(s)	389, 828
XmaJI	CCTAGG	1 cut(s)	845
XspI	CTAG	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.