Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

24137405 .. 24139325

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGACAATTAGCAACGGAGATGTCAAATCTGAAACCTGCAACAATGGCTCTTCTGAGAAGAAACCATTCAGGATCTTCGTTGGTTACGATCCACGAGAAGATCTTGCCTACCAAGTTTGTCATCATTCAATCACAAAAAGATCTTCAATCCCTGTAGAGATCACACCAATTATTCAATCAGATCTTCGAAAGAAAGGTCTGTATTGGAGAGAAAGAGGTCAGTTAGAGAGCACTGAGTTCTCTTTCTCTCGTTTCTTGACTCCTCACTTGTCAGATTACCAAGGTTGGGCTATGTTCGTCGACTGTGATTTCCTCTACCTTGCTGATATCAAGGAACTCACTGATTTGATCGATGATAAATATGCGATCATGTGTGTTCAACATGATTATACTCCTAAGGAGACTACTAAGATGGATGGTGCGGTTCAAACTGTGTACCCGAGGAAGAACTGGTCTTCAATGGTGCTTTACAACTGTGGACACCCTAAGAACAAGACTTTGAGCCCTGAGATTGTTAATACTCAGACTGGTGCGTTTCTCCATAGGTTCCAGTGGCTTGAGGATGAAGAGATTGGGTCTATTCCTTTTGTGTGGAACTTTCTTGAAGGGCACAATAGGGTTGTTGAGAAAGATCCCACCACGCAGCCTAAAGCGGTGCATTATACTCGTGGAGGGCCTTGGTTTGATGCTTGGAAGGATTGCGAGTTTGCGGATCTTTGGCTTAATGAGATGGAAGAGTACAACAAAGAGAACAAGAAGGAAGCTGATAACGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

30.22

Weight (kDa)

5.43

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	3 cut(s)	422, 653, 710
AclWI	GGATC	4 cut(s)	80, 83, 626, 720
AfaI	GTAC	2 cut(s)	437, 740
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	7 cut(s)	129, 147, 176, 380, 428, 459, 605
AluBI	AGCT	1 cut(s)	764
AluI	AGCT	1 cut(s)	764
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	4 cut(s)	80, 83, 626, 720
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	1 cut(s)	643
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	506
BauI	CACGAG	2 cut(s)	93, 666
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	3 cut(s)	406, 410, 724
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	44
BglII	AGATCT	3 cut(s)	100, 140, 181
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	548
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	280, 440, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	455, 532, 550
Bse21I	CCTNAGG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	280, 440, 677
BseGI	GGATG	2 cut(s)	421, 568
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	4 cut(s)	45, 225, 498, 536
BseNI	ACTGG	3 cut(s)	455, 532, 550
BseRI	GAGGAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	1 cut(s)	655
BshFI	GGCC	1 cut(s)	676
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	676
BsoBI	CYCGRG	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	3 cut(s)	233, 506, 612
BspACI	CCGC	3 cut(s)	422, 653, 710
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	4 cut(s)	46, 226, 499, 535
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	4 cut(s)	80, 83, 626, 720
BspQI	GCTCTTC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	455, 532, 550
BssECI	CCNNGG	3 cut(s)	280, 440, 677
BssSI	CACGAG	2 cut(s)	93, 666
BssT1I	CCWWGG	2 cut(s)	280, 677
Bst2BI	CACGAG	2 cut(s)	93, 666
Bst4CI	ACNGT	3 cut(s)	305, 433, 476
Bst6I	CTCTTC	3 cut(s)	55, 561, 729
BstBI	TTCGAA	1 cut(s)	187
BstDEI	CTNAG	7 cut(s)	54, 234, 396, 408, 486, 507, 522
BstF5I	GGATG	2 cut(s)	421, 568
BstMAI	GTCTC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 770
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	655
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	6 cut(s)	72, 100, 140, 181, 631, 712
BstYI	RGATCY	6 cut(s)	72, 100, 140, 181, 631, 712
Bsu15I	ATCGAT	1 cut(s)	351
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	676
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	421, 568
BtsIMutI	CAGTG	3 cut(s)	231, 339, 557
BveI	ACCTGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	674
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	436, 739
CviAII	CATG	2 cut(s)	370, 383
CviJI	RGCY	8 cut(s)	48, 290, 504, 556, 646, 676, 721, 764
CviKI_1	RGCY	8 cut(s)	48, 290, 504, 556, 646, 676, 721, 764
CviQI	GTAC	2 cut(s)	436, 739
DdeI	CTNAG	7 cut(s)	54, 234, 396, 408, 486, 507, 522
Eam1104I	CTCTTC	3 cut(s)	55, 561, 729
EarI	CTCTTC	3 cut(s)	55, 561, 729
Eco130I	CCWWGG	2 cut(s)	280, 677
Eco24I	GRGCYC	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	280, 677
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	280, 677
FaeI	CATG	2 cut(s)	373, 386
FaiI	YATR	7 cut(s)	293, 363, 371, 384, 390, 543, 663
FatI	CATG	2 cut(s)	369, 382
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	644
FokI	GGATG	2 cut(s)	428, 575
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	644
HaeIII	GGCC	1 cut(s)	676
Hin1II	CATG	2 cut(s)	373, 386
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	301, 436, 479
Hpy188I	TCNGA	5 cut(s)	31, 55, 181, 274, 525
Hpy188III	TCNNGA	3 cut(s)	70, 256, 602
Hpy8I	GTNNAC	3 cut(s)	301, 436, 479
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	599, 688, 751
HpyCH4III	ACNGT	3 cut(s)	305, 433, 476
HpyCH4V	TGCA	2 cut(s)	39, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 770
HpyF3I	CTNAG	7 cut(s)	54, 234, 396, 408, 486, 507, 522
Hsp92II	CATG	2 cut(s)	373, 386
LguI	GCTCTTC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	49, 55, 165, 436, 513, 519, 563
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	83
MflI	RGATCY	6 cut(s)	72, 100, 140, 181, 631, 712
MhlI	GDGCHC	3 cut(s)	233, 506, 612
MluCI	AATT	2 cut(s)	6, 168
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	209, 273, 323, 435, 553, 665
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	516, 723
MwoI	GCNNNNNNNGC	2 cut(s)	45, 770
NlaIII	CATG	2 cut(s)	373, 386
NlaIV	GGNNCC	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	645
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	674
PsuI	RGATCY	6 cut(s)	72, 100, 140, 181, 631, 712
RsaI	GTAC	2 cut(s)	437, 740
RsaNI	GTAC	2 cut(s)	436, 739
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	516, 723
SatI	GCNGC	1 cut(s)	644
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	3 cut(s)	233, 506, 612
SetI	ASST	7 cut(s)	38, 199, 220, 286, 321, 548, 766
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	2 cut(s)	6, 168
SsiI	CCGC	3 cut(s)	422, 653, 710
StyI	CCWWGG	2 cut(s)	280, 677
TaaI	ACNGT	3 cut(s)	305, 433, 476
TaqI	TCGA	3 cut(s)	187, 300, 351
TasI	AATT	2 cut(s)	6, 168
TatI	WGTACW	1 cut(s)	738
Tru1I	TTAA	2 cut(s)	516, 723
Tru9I	TTAA	2 cut(s)	516, 723
TscAI	CASTG	3 cut(s)	238, 346, 557
TseI	GCWGC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	238, 346, 557
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.