Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Forward (+)

31993031 .. 31994796

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGGGGATCACTGTTTACTCGATTACGCGATCCACACATTATTAGAGTGAGTTATCTCGCATATGAGGTCTGTCGCCACTCAATATTGAAGCAGTCTTCAATCCCTGTTGAGATTGTACCAATCAAACAATCGGAGCTGAGAAAGAACGGCCTCTACTGGCGTGAAAGAGGGCAGTTTGAGAGCACCGAGTTTTCTTTCACTCGGTTCTTGACTCCACATTTGGCCAACTATGATGGTTGGGCAATGTTTGTGGACTGTGATTTTCTTTACCTTGCTGACATTAAGGAACTCACGGATTTGATTGATGATAAGTACGCTATAATGTGTGTTCAACATGATTATACACCAAAGGAGACAACAAAGATGGATGGAGCGGTGCAAACTGTGTACCCAAGGAAGAACTGGTCTTCCATGGTCTTGTATAACGCTGGCCATCCCAAGAACAAGGTCCTGACACCTGAGGTTGTGAATAAGGAAACAGGTGCTTTCCTTCATAGGTTTCAGTGGCTTGAGGATGGTGAAATTGGGTCAATCCCGTTTGTTTGGAACTTTCTTGAGGGACATAACCAGGTTGTTGAGAATGATCCCACAACTTTTCCCAAGTCGATTCACTATACTCGGGGAGGACCATGGTTTGAGGCCTGGAAGCATTGTGAGTTTGCAGACCTATGGTTAAAGGAGATGGAGGAGTACAAGCAGGAAGCACAGAAGAAAGTTGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

28.55

Weight (kDa)

6.15

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	377
AccII	CGCG	1 cut(s)	30
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	3 cut(s)	16, 26, 581
AcoI	YGGCCR	2 cut(s)	225, 433
AfaI	GTAC	4 cut(s)	120, 317, 392, 695
AgsI	TTSAA	4 cut(s)	91, 102, 335, 722
AjnI	CCWGG	2 cut(s)	570, 644
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	3 cut(s)	16, 26, 581
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	4 cut(s)	151, 225, 433, 642
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspS9I	GGNCC	2 cut(s)	451, 629
AsuHPI	GGTGA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	2 cut(s)	451, 629
AxyI	CCTNAGG	1 cut(s)	462
BalI	TGGCCA	2 cut(s)	227, 435
BbsI	GAAGAC	2 cut(s)	90, 402
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	6 cut(s)	230, 361, 365, 444, 512, 679
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	572, 646
BcoDI	GTCTC	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	572, 646
Bme18I	GGWCC	2 cut(s)	451, 629
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	2 cut(s)	451, 629
BmrFI	CCNGG	2 cut(s)	572, 646
BpiI	GAAGAC	2 cut(s)	90, 402
BpuEI	CTTGAG	2 cut(s)	533, 578
BsaJI	CCNNGG	3 cut(s)	395, 414, 632
Bse1I	ACTGG	2 cut(s)	164, 410
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	572, 646
BseDI	CCNNGG	3 cut(s)	395, 414, 632
BseGI	GGATG	3 cut(s)	376, 436, 523
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	131, 453
BseNI	ACTGG	2 cut(s)	164, 410
BseRI	GAGGAG	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	4 cut(s)	153, 227, 435, 644
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	576
BsnI	GGCC	4 cut(s)	153, 227, 435, 644
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	8, 31, 586
Bsp19I	CCATGG	2 cut(s)	414, 632
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	4 cut(s)	153, 227, 435, 644
BspCNI	CTCAG	2 cut(s)	132, 454
BspFNI	CGCG	1 cut(s)	30
BspPI	GGATC	3 cut(s)	16, 26, 581
BsrBI	CCGCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	164, 410
BssECI	CCNNGG	3 cut(s)	395, 414, 632
BssMI	GATC	3 cut(s)	8, 31, 586
BssT1I	CCWWGG	3 cut(s)	395, 414, 632
Bst2UI	CCWGG	2 cut(s)	572, 646
Bst4CI	ACNGT	3 cut(s)	15, 260, 388
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	140, 462
BstDSI	CCRYGG	2 cut(s)	414, 632
BstF5I	GGATG	3 cut(s)	376, 436, 523
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	11, 34, 589
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	8, 31, 586
BstNI	CCWGG	2 cut(s)	572, 646
BstSCI	CCNGG	2 cut(s)	570, 644
BstUI	CGCG	1 cut(s)	30
BstV2I	GAAGAC	2 cut(s)	90, 402
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	4 cut(s)	153, 227, 435, 644
BtgI	CCRYGG	2 cut(s)	414, 632
BtsCI	GGATG	3 cut(s)	376, 436, 523
BtsIMutI	CAGTG	2 cut(s)	11, 512
Cac8I	GCNNGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	451, 629
CsiI	ACCWGGT	1 cut(s)	570
Csp6I	GTAC	4 cut(s)	119, 316, 391, 694
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	3 cut(s)	338, 415, 633
CviJI	RGCY	6 cut(s)	139, 153, 227, 435, 511, 644
CviKI_1	RGCY	6 cut(s)	139, 153, 227, 435, 511, 644
CviQI	GTAC	4 cut(s)	119, 316, 391, 694
DdeI	CTNAG	2 cut(s)	140, 462
DpnI	GATC	3 cut(s)	10, 33, 588
DpnII	GATC	3 cut(s)	8, 31, 586
EaeI	YGGCCR	2 cut(s)	225, 433
Eco130I	CCWWGG	3 cut(s)	395, 414, 632
Eco147I	AGGCCT	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	451, 629
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	570, 644
EcoT14I	CCWWGG	3 cut(s)	395, 414, 632
ErhI	CCWWGG	3 cut(s)	395, 414, 632
FaeI	CATG	3 cut(s)	341, 418, 636
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	3 cut(s)	337, 414, 632
FauNDI	CATATG	1 cut(s)	64
FokI	GGATG	3 cut(s)	383, 423, 530
HaeIII	GGCC	4 cut(s)	153, 227, 435, 644
Hin1II	CATG	3 cut(s)	341, 418, 636
HinfI	GANTC	2 cut(s)	214, 610
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	18, 256, 391
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	211, 454, 557
Hpy8I	GTNNAC	3 cut(s)	18, 256, 391
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	3 cut(s)	15, 260, 388
HpyCH4V	TGCA	2 cut(s)	382, 665
HpyF3I	CTNAG	2 cut(s)	140, 462
Hsp92II	CATG	3 cut(s)	341, 418, 636
Kzo9I	GATC	3 cut(s)	8, 31, 586
LmnI	GCTCC	2 cut(s)	136, 374
MabI	ACCWGGT	1 cut(s)	570
MalI	GATC	3 cut(s)	10, 33, 588
MbiI	CCGCTC	1 cut(s)	377
MboI	GATC	3 cut(s)	8, 31, 586
MboII	GAAGA	4 cut(s)	90, 402, 412, 724
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	2 cut(s)	227, 435
MluCI	AATT	1 cut(s)	525
MluNI	TGGCCA	2 cut(s)	227, 435
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	9 cut(s)	61, 164, 164, 457, 508, 553, 620, 634, 682
Mox20I	TGGCCA	2 cut(s)	227, 435
MscI	TGGCCA	2 cut(s)	227, 435
MseI	TTAA	2 cut(s)	285, 677
Msp20I	TGGCCA	2 cut(s)	227, 435
MspR9I	CCNGG	2 cut(s)	572, 646
MvaI	CCWGG	2 cut(s)	572, 646
MvnI	CGCG	1 cut(s)	30
NcoI	CCATGG	2 cut(s)	414, 632
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	3 cut(s)	8, 31, 586
NlaIII	CATG	3 cut(s)	341, 418, 636
PceI	AGGCCT	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	610
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	570, 644
PspGI	CCWGG	2 cut(s)	570, 644
PspPI	GGNCC	2 cut(s)	451, 629
PspPPI	RGGWCCY	1 cut(s)	451
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
RsaI	GTAC	4 cut(s)	120, 317, 392, 695
RsaNI	GTAC	4 cut(s)	119, 316, 391, 694
SaqAI	TTAA	2 cut(s)	285, 677
Sau3AI	GATC	3 cut(s)	8, 31, 586
Sau96I	GGNCC	2 cut(s)	451, 629
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	572, 646
SduI	GDGCHC	1 cut(s)	188
SexAI	ACCWGGT	1 cut(s)	570
SinI	GGWCC	2 cut(s)	451, 629
SmlI	CTYRAG	2 cut(s)	512, 557
SmoI	CTYRAG	2 cut(s)	512, 557
Sse9I	AATT	1 cut(s)	525
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	1 cut(s)	377
SspI	AATATT	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	570, 644
StyI	CCWWGG	3 cut(s)	395, 414, 632
TaaI	ACNGT	3 cut(s)	15, 260, 388
TaqI	TCGA	2 cut(s)	22, 608
TasI	AATT	1 cut(s)	525
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	285, 677
Tru9I	TTAA	2 cut(s)	285, 677
TscAI	CASTG	2 cut(s)	18, 512
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	18, 512
VpaK11BI	GGWCC	2 cut(s)	451, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.