Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

51678 .. 53212

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ctgcaagatccacatattattagagtgagttgtaaatcatcatcagctaagatgagtagcgaagggaaggttcatccagtgacttccaatggagatttaactaagaagcccttcaagatctttgtgggttatgatccacgtgaagatctcgcatatgaggtctgtcgccactcaatattgaagcgatcttcaatccctgttgagattgtaccaatcaaacaatcggagctgagaaagaacggcctctactggcgtgaaagagggaagtttgagagcaccgagttttctttcactcggttcttgactccacatttggccaactatgatggttgggcaatgtttgtggactgtgattttctttaccttgctgacattaaggaactcacggatttgattgatgataagtacgctatgatgtgtgttcaacatgattatacaccaaaggagacaacaaagatggatggagcggtgcaaactgtgtacccgaggaagaactggtcttccatggtcttgtataactctggccatcccaagaacaaggtcctgacacctgaggttgtgaataaggaaacaggtgctttccttcataggtttcagtggcttgaggatggtgaaattgggtcgatcccgtttgtttggaactttcttgagggacataaccaggttgttgaaaatgatcccacaacttttcccaagtcgattcactatactcggggaggaccatggtttgaggcctggaagcattgtgagtttgcagacctatggttaaaggagatggaggagtacaagcaggaagcacagaagaaagttgaaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.73

Weight (kDa)

6.4

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	467
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	4 cut(s)	2, 128, 619, 671
AcoI	YGGCCR	2 cut(s)	315, 523
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	4 cut(s)	210, 407, 482, 785
AgsI	TTSAA	6 cut(s)	115, 181, 192, 425, 671, 812
AjnI	CCWGG	2 cut(s)	660, 734
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	2 cut(s)	47, 229
AluI	AGCT	2 cut(s)	47, 229
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	4 cut(s)	2, 128, 619, 671
Ama87I	CYCGRG	2 cut(s)	484, 711
AoxI	GGCC	4 cut(s)	241, 315, 523, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	541, 719
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	2 cut(s)	484, 711
AvaII	GGWCC	2 cut(s)	541, 719
AxyI	CCTNAGG	1 cut(s)	552
BalI	TGGCCA	2 cut(s)	317, 525
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	278
BccI	CCATC	6 cut(s)	320, 451, 455, 534, 602, 769
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	2 cut(s)	662, 736
BcoDI	GTCTC	1 cut(s)	440
BglII	AGATCT	2 cut(s)	117, 145
Bme1390I	CCNGG	2 cut(s)	662, 736
Bme18I	GGWCC	2 cut(s)	541, 719
BmeT110I	CYCGRG	2 cut(s)	484, 711
BmgT120I	GGNCC	2 cut(s)	541, 719
BmrFI	CCNGG	2 cut(s)	662, 736
BpiI	GAAGAC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	623, 668
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	485, 504, 722
Bse1I	ACTGG	3 cut(s)	77, 254, 500
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	662, 736
BseDI	CCNNGG	3 cut(s)	485, 504, 722
BseGI	GGATG	4 cut(s)	73, 466, 526, 613
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	221, 543
BseNI	ACTGG	3 cut(s)	77, 254, 500
BseRI	GAGGAG	1 cut(s)	794
BshFI	GGCC	4 cut(s)	243, 317, 525, 734
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	484, 711
BslFI	GGGAC	1 cut(s)	666
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	4 cut(s)	243, 317, 525, 734
BsoBI	CYCGRG	2 cut(s)	484, 711
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
Bsp19I	CCATGG	2 cut(s)	504, 722
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	4 cut(s)	243, 317, 525, 734
BspCNI	CTCAG	2 cut(s)	222, 544
BspPI	GGATC	4 cut(s)	2, 128, 619, 671
BsrBI	CCGCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	77, 254, 500
BssECI	CCNNGG	3 cut(s)	485, 504, 722
BssMI	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
BssT1I	CCWWGG	2 cut(s)	504, 722
Bst2UI	CCWGG	2 cut(s)	662, 736
Bst4CI	ACNGT	2 cut(s)	350, 478
BstBAI	YACGTR	1 cut(s)	140
BstDEI	CTNAG	4 cut(s)	48, 102, 230, 552
BstDSI	CCRYGG	2 cut(s)	504, 722
BstF5I	GGATG	4 cut(s)	73, 466, 526, 613
BstKTI	GATC	7 cut(s)	10, 120, 136, 148, 188, 627, 679
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
BstNI	CCWGG	2 cut(s)	662, 736
BstSCI	CCNGG	2 cut(s)	660, 734
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	3 cut(s)	7, 117, 145
BstYI	RGATCY	3 cut(s)	7, 117, 145
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	4 cut(s)	243, 317, 525, 734
BtgI	CCRYGG	2 cut(s)	504, 722
BtsCI	GGATG	4 cut(s)	73, 466, 526, 613
BtsIMutI	CAGTG	2 cut(s)	84, 602
Cfr13I	GGNCC	2 cut(s)	541, 719
CsiI	ACCWGGT	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	209, 406, 481, 784
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	3 cut(s)	428, 505, 723
CviJI	RGCY	8 cut(s)	47, 109, 229, 243, 317, 525, 601, 734
CviKI_1	RGCY	8 cut(s)	47, 109, 229, 243, 317, 525, 601, 734
CviQI	GTAC	4 cut(s)	209, 406, 481, 784
DdeI	CTNAG	4 cut(s)	48, 102, 230, 552
DpnI	GATC	7 cut(s)	9, 119, 135, 147, 187, 626, 678
DpnII	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
EaeI	YGGCCR	2 cut(s)	315, 523
Eco130I	CCWWGG	2 cut(s)	504, 722
Eco147I	AGGCCT	1 cut(s)	734
Eco47I	GGWCC	2 cut(s)	541, 719
Eco72I	CACGTG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	552
Eco88I	CYCGRG	2 cut(s)	484, 711
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	660, 734
EcoT14I	CCWWGG	2 cut(s)	504, 722
ErhI	CCWWGG	2 cut(s)	504, 722
FaeI	CATG	3 cut(s)	431, 508, 726
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	3 cut(s)	427, 504, 722
FauNDI	CATATG	1 cut(s)	154
FokI	GGATG	4 cut(s)	60, 473, 513, 620
HaeIII	GGCC	4 cut(s)	243, 317, 525, 734
Hin1II	CATG	3 cut(s)	431, 508, 726
HinfI	GANTC	2 cut(s)	304, 700
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	346, 481
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	115, 301, 544, 647
Hpy8I	GTNNAC	2 cut(s)	346, 481
HpyAV	CCTTC	4 cut(s)	56, 61, 121, 593
HpyCH4III	ACNGT	2 cut(s)	350, 478
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	4, 472, 755
HpyF3I	CTNAG	4 cut(s)	48, 102, 230, 552
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	431, 508, 726
Kzo9I	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
LmnI	GCTCC	2 cut(s)	226, 464
MabI	ACCWGGT	1 cut(s)	660
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	7 cut(s)	9, 119, 135, 147, 187, 626, 678
MbiI	CCGCTC	1 cut(s)	467
MboI	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
MboII	GAAGA	5 cut(s)	155, 180, 492, 502, 814
MflI	RGATCY	3 cut(s)	7, 117, 145
MhlI	GDGCHC	1 cut(s)	278
MlsI	TGGCCA	2 cut(s)	317, 525
MluCI	AATT	1 cut(s)	615
MluNI	TGGCCA	2 cut(s)	317, 525
MlyI	GAGTC	1 cut(s)	298
Mox20I	TGGCCA	2 cut(s)	317, 525
MroXI	GAANNNNTTC	1 cut(s)	110
MscI	TGGCCA	2 cut(s)	317, 525
MseI	TTAA	3 cut(s)	98, 375, 767
Msp20I	TGGCCA	2 cut(s)	317, 525
MspR9I	CCNGG	2 cut(s)	662, 736
MvaI	CCWGG	2 cut(s)	662, 736
NcoI	CCATGG	2 cut(s)	504, 722
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
NlaIII	CATG	3 cut(s)	431, 508, 726
NmuCI	GTSAC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	734
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	700
PleI	GAGTC	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	660, 734
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	660, 734
PspPI	GGNCC	2 cut(s)	541, 719
PspPPI	RGGWCCY	1 cut(s)	541
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PsuI	RGATCY	3 cut(s)	7, 117, 145
RsaI	GTAC	4 cut(s)	210, 407, 482, 785
RsaNI	GTAC	4 cut(s)	209, 406, 481, 784
SaqAI	TTAA	3 cut(s)	98, 375, 767
Sau3AI	GATC	7 cut(s)	7, 117, 133, 145, 185, 624, 676
Sau96I	GGNCC	2 cut(s)	541, 719
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	662, 736
SduI	GDGCHC	1 cut(s)	278
SexAI	ACCWGGT	1 cut(s)	660
SinI	GGWCC	2 cut(s)	541, 719
SmlI	CTYRAG	2 cut(s)	602, 647
SmoI	CTYRAG	2 cut(s)	602, 647
Sse9I	AATT	1 cut(s)	615
SseBI	AGGCCT	1 cut(s)	734
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	2 cut(s)	660, 734
StyI	CCWWGG	2 cut(s)	504, 722
TaaI	ACNGT	2 cut(s)	350, 478
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	623, 698
TasI	AATT	1 cut(s)	615
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	3 cut(s)	98, 375, 767
Tru9I	TTAA	3 cut(s)	98, 375, 767
TscAI	CASTG	2 cut(s)	84, 602
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	62, 575
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	84, 602
VpaK11BI	GGWCC	2 cut(s)	541, 719
XmnI	GAANNNNTTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.