Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

8771407 .. 8772231

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1085100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTTTGAATGATGGGAAGGTTCATCCAACGAGTTGTAATTGTGACATAGAGAAGGACAACCCCTTCAAGATATTTATGGGTTACGATTCATGCGAAGACATTGCGTATGAGGTAGAGAGCATCGATTTTTCTTTTACCACATTTTTTACTCCACATTTGGAGAATTACGAAGGTTGGGCAGTGTTTGTGGATTGTGATTTTCTTTACCTTGTTGACATTAAGGAACTGAGAGACTTGACTGATGACAAATATGCTATAATGTGTGTTCAACATGAATACACACCAAAGGAGACGACAAAAATAGATGGAGCAGTGCAGACTGTGTATCCAAGGAAAAATTGGTCTTCCATGGTGTTGTATAACTGCAGACATCCCAAAAACAAAGTATTGACACCCGAGGTTGTGAATGCGCAAACAGACGCTTTTCTTCATAGGTTTCAGTGGCTTGAGGATGAAGAAATCAAGTCCATCCCATTTACTTGGAACTTTCTTGAGGGGCACAACCAGGTTGTTGAGAATGATCCCGAAACTTTCCCAAAGGCGATACACTATACTCGCGGAGGGTCGTGGTTTGAGGCTTGGAAGGGTTGTGAGTTTGCAGACCTGTGGTTGAACGAAATGGAGAAGTACGTGCAAGAAATGAATAACGAGATTAGAAACCAGATAGAATTAGTAGGTGGTGTGCTGCATTTGAAGTTTGGGATTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.99

Weight (kDa)

4.81

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	414
AccII	CGCG	1 cut(s)	561
AciI	CCGC	1 cut(s)	561
AclWI	GGATC	1 cut(s)	518
AfaI	GTAC	1 cut(s)	632
AgsI	TTSAA	5 cut(s)	10, 70, 272, 616, 697
AjnI	CCWGG	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	228, 287
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	504
BbsI	GAAGAC	2 cut(s)	105, 339
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	3 cut(s)	8, 302, 479
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	228, 287
BfmI	CTRYAG	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	689
BlsI	GCNGC	1 cut(s)	690
Bme1390I	CCNGG	1 cut(s)	509
BmeT110I	CYCGRG	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	105, 339
BpuEI	CTTGAG	2 cut(s)	470, 515
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	634
BsaJI	CCNNGG	3 cut(s)	332, 351, 399
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	332, 351, 399
BseGI	GGATG	4 cut(s)	25, 373, 460, 471
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	675
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	561
BshVI	ATCGAT	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	228, 287
BsmBI	CGTCTC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	523
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	371
BspPI	GGATC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	332, 351, 399
BssMI	GATC	1 cut(s)	523
BssT1I	CCWWGG	2 cut(s)	332, 351
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	634
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	4 cut(s)	25, 373, 460, 471
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	2 cut(s)	228, 287
BstMBI	GATC	1 cut(s)	523
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	504
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	675
BstV2I	GAAGAC	2 cut(s)	105, 339
BstXI	CCANNNNNNTGG	1 cut(s)	483
Bsu15I	ATCGAT	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	25, 373, 460, 471
BtsI	GCAGTG	2 cut(s)	189, 321
BtsIMutI	CAGTG	3 cut(s)	189, 321, 449
CfoI	GCGC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	431
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	3 cut(s)	93, 275, 352
CviJI	RGCY	2 cut(s)	448, 581
CviKI_1	RGCY	2 cut(s)	448, 581
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	332, 351
Eco88I	CYCGRG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	332, 351
ErhI	CCWWGG	2 cut(s)	332, 351
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	96, 278, 355
FatI	CATG	3 cut(s)	92, 274, 351
Fnu4HI	GCNGC	1 cut(s)	689
FokI	GGATG	4 cut(s)	12, 360, 458, 467
Fsp4HI	GCNGC	1 cut(s)	689
FspI	TGCGCA	1 cut(s)	414
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	689
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	3 cut(s)	96, 278, 355
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	89, 706
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	70, 494, 527
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	5 cut(s)	13, 49, 76, 167, 580
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	5 cut(s)	319, 369, 602, 637, 691
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	3 cut(s)	96, 278, 355
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	4 cut(s)	494, 521, 620, 677
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	507
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	2 cut(s)	44, 83
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	4 cut(s)	110, 339, 422, 470
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	4 cut(s)	40, 166, 340, 671
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	106, 394, 445, 490, 557, 571
MseI	TTAA	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	561
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	3 cut(s)	96, 278, 355
NmuCI	GTSAC	1 cut(s)	44
NsbI	TGCGCA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	89, 706
PkrI	GCNGC	1 cut(s)	690
Ppu21I	YACGTR	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	689
Sau3AI	GATC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	504
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	449, 494
SmoI	CTYRAG	2 cut(s)	449, 494
Sse9I	AATT	4 cut(s)	40, 166, 340, 671
SsiI	CCGC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	2 cut(s)	332, 351
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	1 cut(s)	126
TasI	AATT	4 cut(s)	40, 166, 340, 671
TfiI	GAWTC	2 cut(s)	89, 706
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	189, 321, 449
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	7 cut(s)	14, 81, 291, 422, 471, 659, 698
TspRI	CASTG	3 cut(s)	189, 321, 449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.