Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009420

Physical Location & Seq

Genomic Coordinates Reverse (-)

883801 .. 884571

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTTCGAGTGATGGGAAGATTCATCCAGTGAGTTCTAATGGCAACATTAAGGAAAAACCCTTTAAGATCTTTGTGGGTTATGATCCGCGTGAAGATCTCGCATACGAGGTCTGTCGCCACTCAATTTTGAAGCGGTCTTCAATCCCTGTAGAGATCACACCAATCAAACAATCAGATCTGCGAAAGGATGGCCTGTACTGGCGTGAACGAGGGCAGTTTGAAAGCACTGAGTTTTCATTTTCTCGGTTCTTGACTCCACGTTTGGCGAATTATGAAGGTTGGGCAATGTTTGTGGATTGTGATTTTCTTTACCTTGCTGACATTAAGGAGCTGCGGGACTTGATTGACGATAAGTACGCTATAATGTGTGTTCAACATGATTATACTCCAAAAGAGACAACAAAAATGGATGGAGCCGTTCAAACTGTGTATCCGAGGAAGAACTGGTCTTCCATGGTATTGTATAACTGTGGGCATCCCAAGAACAAGGTCTTAACACCCGAGGTTGTGAACAAGGAAACGGGTGCTTTTCTTCACAGGTTTCAGTGGCTCGAGGATAATGAAATAGGGTCGATCCCGTTTGTATGGAATTTTCTCGAGGGACATAACAAGGTTGTTGAAAATGATCCTCAAACACAACCCAAGGCTGTACACTACACTCGTGGAGGACCGTGGTTTGAAGCTTGGAAGCATTGCGAGTTTGCAGACCTGTGGTTGAACGAGAAGGAGGAGTATGTGAAGGAATCAACGAAGAAAACAGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

30.02

Weight (kDa)

6.1

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64980 AT1G64980 AT1G64980
fragaria_vesca	FvH4_6g17800
malus_domestica	MD07G1085100.v1.1 MD12G1017300.v1.1 MD14G1015000.v1.1
prunus_persica	Prupe.2G050300_v2.0.a1 Prupe.7G118400_v2.0.a1
pyrus_communis	pycom12g01390 pycom14g01250
rosa_chinensis	RchiOBHm_Chr3g0472051
rosa_laevigata	RLG00000024109
rosa_multiflora	Rmu_sc0002532.1_g000011
rosa_roxburghii	Rroxscaffold_6G00409290
rosa_rugosa	Rorug03G0121900
rosa_samantha	Rh3AG173600 Rh3BG199000 Rh3CG190100 Rh3CG197500 Rh3DG175500
rosa_wichuraiana	Rw3G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	91
AciI	CCGC	3 cut(s)	89, 136, 337
AclWI	GGATC	3 cut(s)	80, 571, 623
AcsI	RAATTY	1 cut(s)	592
AfaI	GTAC	3 cut(s)	200, 359, 654
AgsI	TTSAA	8 cut(s)	133, 144, 224, 377, 425, 623, 683, 721
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
AluBI	AGCT	2 cut(s)	334, 686
AluI	AGCT	2 cut(s)	334, 686
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	3 cut(s)	80, 571, 623
Ama87I	CYCGRG	3 cut(s)	503, 554, 599
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspS9I	GGNCC	1 cut(s)	671
AvaI	CYCGRG	3 cut(s)	503, 554, 599
AvaII	GGWCC	1 cut(s)	671
BauI	CACGAG	1 cut(s)	663
BbsI	GAAGAC	2 cut(s)	132, 444
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	8, 185, 407
BceAI	ACGGC	1 cut(s)	404
BciVI	GTATCC	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	444
BglII	AGATCT	3 cut(s)	69, 97, 178
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	3 cut(s)	503, 554, 599
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	2 cut(s)	132, 444
BsaJI	CCNNGG	5 cut(s)	437, 456, 504, 645, 674
Bse1I	ACTGG	3 cut(s)	29, 206, 452
Bse3DI	GCAATG	2 cut(s)	294, 694
BseDI	CCNNGG	5 cut(s)	437, 456, 504, 645, 674
BseGI	GGATG	4 cut(s)	25, 196, 418, 478
BseMI	GCAATG	2 cut(s)	294, 694
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	3 cut(s)	29, 206, 452
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	195
BsiHKCI	CYCGRG	3 cut(s)	503, 554, 599
BslFI	GGGAC	2 cut(s)	353, 618
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	353, 618
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	3 cut(s)	503, 554, 599
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	3 cut(s)	89, 136, 337
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	3 cut(s)	80, 571, 623
BsrDI	GCAATG	2 cut(s)	294, 694
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	29, 206, 452
BssECI	CCNNGG	5 cut(s)	437, 456, 504, 645, 674
BssMI	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	456, 645
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	430, 473, 675
BstAUI	TGTACA	1 cut(s)	652
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	2 cut(s)	456, 674
BstF5I	GGATG	4 cut(s)	25, 196, 418, 478
BstFNI	CGCG	1 cut(s)	91
BstKTI	GATC	7 cut(s)	72, 88, 100, 159, 181, 579, 631
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	2 cut(s)	132, 444
BstX2I	RGATCY	3 cut(s)	69, 97, 178
BstYI	RGATCY	3 cut(s)	69, 97, 178
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	2 cut(s)	456, 674
BtsCI	GGATG	4 cut(s)	25, 196, 418, 478
BtsIMutI	CAGTG	3 cut(s)	36, 228, 554
Cfr13I	GGNCC	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	199, 358, 653
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	2 cut(s)	380, 457
CviJI	RGCY	6 cut(s)	195, 334, 419, 553, 650, 686
CviKI_1	RGCY	6 cut(s)	195, 334, 419, 553, 650, 686
CviQI	GTAC	3 cut(s)	199, 358, 653
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	7 cut(s)	71, 87, 99, 158, 180, 578, 630
DpnII	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
Eco130I	CCWWGG	2 cut(s)	456, 645
Eco47I	GGWCC	1 cut(s)	671
Eco88I	CYCGRG	3 cut(s)	503, 554, 599
EcoT14I	CCWWGG	2 cut(s)	456, 645
ErhI	CCWWGG	2 cut(s)	456, 645
FaeI	CATG	2 cut(s)	383, 460
FaqI	GGGAC	2 cut(s)	353, 618
FatI	CATG	2 cut(s)	379, 456
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	4 cut(s)	12, 203, 425, 465
Fsp4HI	GCNGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	383, 460
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	3 cut(s)	22, 256, 746
Hpy166II	GTNNAC	3 cut(s)	209, 514, 655
Hpy188I	TCNGA	2 cut(s)	178, 438
Hpy188III	TCNNGA	2 cut(s)	253, 599
Hpy8I	GTNNAC	3 cut(s)	209, 514, 655
HpyAV	CCTTC	3 cut(s)	272, 721, 736
HpyCH4III	ACNGT	3 cut(s)	430, 473, 675
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	707
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	383, 460
Kzo9I	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
LmnI	GCTCC	2 cut(s)	331, 416
LpnPI	CCDG	7 cut(s)	42, 162, 187, 209, 433, 526, 725
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	262
MalI	GATC	7 cut(s)	71, 87, 99, 158, 180, 578, 630
MboI	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
MboII	GAAGA	7 cut(s)	31, 107, 132, 444, 454, 527, 766
MflI	RGATCY	3 cut(s)	69, 97, 178
MluCI	AATT	3 cut(s)	126, 271, 592
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	9 cut(s)	103, 206, 432, 499, 550, 595, 642, 662, 724
MseI	TTAA	4 cut(s)	51, 66, 327, 497
MvnI	CGCG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
NlaIII	CATG	2 cut(s)	383, 460
NlaIV	GGNNCC	1 cut(s)	418
PaeR7I	CTCGAG	2 cut(s)	554, 599
PfeI	GAWTC	2 cut(s)	22, 746
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	671
PspXI	VCTCGAGB	1 cut(s)	554
PsuI	RGATCY	3 cut(s)	69, 97, 178
RsaI	GTAC	3 cut(s)	200, 359, 654
RsaNI	GTAC	3 cut(s)	199, 358, 653
SaqAI	TTAA	4 cut(s)	51, 66, 327, 497
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	7 cut(s)	69, 85, 97, 156, 178, 576, 628
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	2 cut(s)	554, 599
SinI	GGWCC	1 cut(s)	671
SlaI	CTCGAG	2 cut(s)	554, 599
SmlI	CTYRAG	2 cut(s)	554, 599
SmoI	CTYRAG	2 cut(s)	554, 599
Sse9I	AATT	3 cut(s)	126, 271, 592
SsiI	CCGC	3 cut(s)	89, 136, 337
StyI	CCWWGG	2 cut(s)	456, 645
TaaI	ACNGT	3 cut(s)	430, 473, 675
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	4 cut(s)	8, 555, 575, 600
TasI	AATT	3 cut(s)	126, 271, 592
TatI	WGTACW	2 cut(s)	198, 652
TfiI	GAWTC	2 cut(s)	22, 746
Tru1I	TTAA	4 cut(s)	51, 66, 327, 497
Tru9I	TTAA	4 cut(s)	51, 66, 327, 497
TscAI	CASTG	3 cut(s)	36, 235, 554
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	14, 228, 291, 579
TspRI	CASTG	3 cut(s)	36, 235, 554
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	1 cut(s)	592
XhoI	CTCGAG	2 cut(s)	554, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.